Wall clock time and date at job start Mon Mar 30 2020 04:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45194 * 109.47144 * 2 1 4 4 C 1.34223 * 117.00384 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99846 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00475 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.46635 * 304.99609 * 6 4 3 8 8 O 1.42897 * 109.47118 * 184.99994 * 6 4 3 9 9 C 1.52997 * 109.47200 * 64.99737 * 6 4 3 10 10 N 1.46901 * 109.46918 * 178.75931 * 9 6 4 11 11 C 1.46846 * 111.00176 * 51.94022 * 10 9 6 12 12 C 1.53041 * 109.52290 * 185.83632 * 11 10 9 13 13 C 1.53114 * 109.28195 * 300.82238 * 12 11 10 14 14 C 1.53123 * 109.15988 * 57.65207 * 13 12 11 15 15 H 1.08998 * 109.50347 * 62.29076 * 14 13 12 16 16 C 1.50696 * 109.50530 * 182.40413 * 14 13 12 17 17 H 1.08003 * 120.00040 * 119.79968 * 16 14 13 18 18 C 1.37877 * 120.00236 * 299.80892 * 16 14 13 19 19 N 1.31509 * 119.99704 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00253 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47393 * 89.99631 * 20 18 16 22 22 H 1.48500 * 109.47117 * 209.99569 * 20 18 16 23 23 H 1.48497 * 109.47248 * 329.99803 * 20 18 16 24 24 C 1.46855 * 110.99786 * 176.15145 * 10 9 6 25 25 H 1.09003 * 109.47399 * 60.00166 * 1 2 3 26 26 H 1.09005 * 109.47197 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47190 * 299.99731 * 1 2 3 28 28 H 1.08997 * 109.46783 * 240.00107 * 2 1 3 29 29 H 1.09003 * 109.46827 * 120.00337 * 2 1 3 30 30 H 0.96697 * 114.00473 * 299.99078 * 8 6 4 31 31 H 1.09000 * 109.46788 * 298.75418 * 9 6 4 32 32 H 1.08990 * 109.47155 * 58.75742 * 9 6 4 33 33 H 1.08996 * 109.46365 * 305.85880 * 11 10 9 34 34 H 1.09001 * 109.46042 * 65.82741 * 11 10 9 35 35 H 1.08997 * 109.50242 * 180.88027 * 12 11 10 36 36 H 1.08998 * 109.53359 * 60.78352 * 12 11 10 37 37 H 1.09003 * 109.52234 * 297.75096 * 13 12 11 38 38 H 1.08998 * 109.57694 * 177.58789 * 13 12 11 39 39 H 0.97006 * 120.00012 * 180.02562 * 19 18 16 40 40 H 1.08991 * 109.46323 * 294.17323 * 24 10 9 41 41 H 1.08999 * 109.45831 * 54.15429 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5145 3.4988 -0.8413 8 8 5.3429 2.8646 -0.1181 9 6 3.5529 3.6409 1.3079 10 7 4.1394 4.9877 1.3211 11 6 3.7917 5.7251 0.0998 12 6 4.5353 7.0627 0.0808 13 6 4.1454 7.8754 1.3185 14 6 4.4733 7.0650 2.5756 15 1 5.5471 6.8841 2.6222 16 6 4.0384 7.8332 3.7970 17 1 3.3060 7.4101 4.4686 18 6 4.5754 9.0761 4.0571 19 7 5.4675 9.5912 3.2396 20 14 4.0359 10.0286 5.5708 21 1 4.9183 9.6826 6.7140 22 1 4.1278 11.4854 5.2977 23 1 2.6326 9.6750 5.9040 24 6 3.7315 5.7275 2.5224 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.7727 2.3779 0.5984 31 1 2.4684 3.7162 1.3874 32 1 3.9401 3.0677 2.1501 33 1 4.0779 5.1380 -0.7728 34 1 2.7172 5.9067 0.0786 35 1 4.2650 7.6165 -0.8182 36 1 5.6102 6.8822 0.0877 37 1 3.0770 8.0899 1.2917 38 1 4.7046 8.8110 1.3321 39 1 5.8456 10.4655 3.4227 40 1 2.6573 5.9091 2.4898 41 1 3.9743 5.1421 3.4092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397726232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:43 Heat of formation + Delta-G solvation = -142.580433 kcal Electronic energy + Delta-G solvation = -21578.430359 eV Core-core repulsion = 18265.087876 eV Total energy + Delta-G solvation = -3313.342483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.83436 -38.61963 -37.24232 -36.09290 -33.69070 -32.19633 -31.71411 -30.03529 -28.91947 -25.06544 -24.83859 -23.29417 -21.85389 -21.63248 -20.65315 -18.63186 -18.33264 -17.38618 -16.84395 -16.29926 -15.59834 -15.41820 -14.97271 -14.47784 -14.23692 -13.97576 -13.51652 -13.36288 -13.14132 -12.89260 -12.44509 -12.36518 -12.20175 -11.99468 -11.88483 -11.67056 -11.42167 -11.00596 -10.94243 -10.80497 -10.69737 -10.58945 -10.12803 -10.03619 -9.81090 -9.45175 -9.03518 -8.69976 -8.29609 -7.71791 -5.96811 -4.03191 1.93256 2.38627 3.31274 3.38137 3.40668 4.00200 4.42380 4.46165 4.61500 4.65934 4.67923 4.79175 4.89776 4.95637 5.33311 5.34340 5.46350 5.58678 5.66538 5.69825 5.73632 5.84956 6.06680 6.17017 6.25649 6.38052 6.49719 6.72507 6.75935 6.95194 7.22299 7.33476 7.39490 7.58889 7.61916 7.73330 7.78632 8.08854 8.18286 8.47965 9.00817 9.61112 11.09150 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028731 B = 0.003885 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.320744 B = 7205.625415 C = 7647.535548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.435 3.565 5 O -0.504 6.504 6 C 0.122 3.878 7 H 0.137 0.863 8 O -0.515 6.515 9 C 0.030 3.970 10 N -0.526 5.526 11 C 0.056 3.944 12 C -0.116 4.116 13 C -0.111 4.111 14 C 0.056 3.944 15 H 0.035 0.965 16 C -0.516 4.516 17 H 0.053 0.947 18 C 0.063 3.937 19 N -0.887 5.887 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.067 3.933 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.385 0.615 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.024 0.976 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.091 0.909 39 H 0.260 0.740 40 H 0.021 0.979 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 -15.133 -7.360 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.272 6.272 4 C 0.277 3.723 5 O -0.391 6.391 6 C 0.060 3.940 7 H 0.155 0.845 8 O -0.320 6.320 9 C -0.099 4.099 10 N -0.251 5.251 11 C -0.072 4.072 12 C -0.154 4.154 13 C -0.149 4.149 14 C 0.037 3.963 15 H 0.054 0.946 16 C -0.555 4.555 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.059 4.059 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.234 0.766 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.907 -14.994 -7.901 18.302 hybrid contribution -1.122 0.053 1.304 1.721 sum -8.029 -14.941 -6.596 18.200 Atomic orbital electron populations 1.21813 0.92491 1.02959 1.03743 1.23047 0.95518 0.80277 1.02569 1.86549 1.24524 1.32449 1.83664 1.25105 0.80899 0.94073 0.72214 1.90667 1.60450 1.42923 1.45073 1.21683 0.83300 0.87344 1.01687 0.84542 1.86662 1.14993 1.77738 1.52639 1.22648 0.98605 0.93112 0.95580 1.62022 1.58792 1.00467 1.03773 1.22165 0.97158 0.95880 0.91981 1.21649 1.00383 0.94182 0.99153 1.21661 0.99118 1.01082 0.93072 1.18659 0.96178 0.88166 0.93318 0.94637 1.21138 1.24114 1.02162 1.08047 0.92876 1.24931 0.94947 0.97512 0.96434 1.69893 1.28632 1.17587 1.36483 0.86628 0.78968 0.79158 0.83413 1.20723 1.21282 1.20043 1.22357 0.97276 0.96897 0.89386 0.91399 0.90251 0.91284 0.91262 0.91189 0.76610 0.93217 0.90271 0.91783 0.95802 0.93493 0.91873 0.95183 0.89097 0.93043 0.96080 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.29 37.16 0.38 -0.63 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.35 -4.13 10.21 -39.24 -0.40 -4.53 16 4 C 0.44 5.62 7.27 36.00 0.26 5.88 16 5 O -0.50 -7.57 16.07 -25.46 -0.41 -7.98 16 6 C 0.12 1.56 2.90 -27.89 -0.08 1.48 16 7 H 0.14 1.64 6.27 -51.93 -0.33 1.32 16 8 O -0.52 -7.23 12.83 -55.14 -0.71 -7.94 16 9 C 0.03 0.42 4.77 -3.83 -0.02 0.40 16 10 N -0.53 -9.28 4.61 -234.67 -1.08 -10.36 16 11 C 0.06 0.95 5.04 -3.83 -0.02 0.93 16 12 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 13 C -0.11 -2.60 5.03 -26.61 -0.13 -2.73 16 14 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 15 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 16 C -0.52 -13.98 8.56 -34.44 -0.29 -14.27 16 17 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.17 11.36 55.43 0.63 -24.54 16 20 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.07 1.39 4.68 -3.83 -0.02 1.37 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 30 H 0.38 4.56 8.79 45.56 0.40 4.96 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.97 5.87 -51.93 -0.30 0.66 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.21 8.12 -51.93 -0.42 0.78 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -30.28 331.43 -8.16 -38.44 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.01 Total: 2.25 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.16 Total: -6.41 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.45 Total: -34.91 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -1.52 Total: -20.44 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.28 -8.16 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397726232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.141 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds