Wall clock time and date at job start Mon Mar 30 2020 04:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00117 * 2 1 4 4 C 1.53000 * 109.47417 * 180.02562 * 3 2 1 5 5 O 1.45198 * 109.46977 * 64.99544 * 4 3 2 6 6 C 1.34636 * 116.99855 * 180.02562 * 5 4 3 7 7 O 1.21509 * 120.00384 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00274 * 180.02562 * 6 5 4 9 9 C 1.46919 * 120.63395 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.29715 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 C 1.50701 * 109.47085 * 295.13082 * 12 11 10 14 14 H 1.07998 * 120.00293 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99472 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00682 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99519 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47133 * 60.00060 * 17 15 13 19 19 H 1.48503 * 109.46942 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47295 * 299.99976 * 17 15 13 21 21 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 22 22 C 1.46933 * 120.62602 * 359.97266 * 8 6 5 23 23 H 1.09004 * 109.47482 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47340 * 299.99877 * 1 2 3 25 25 H 1.08996 * 109.47355 * 59.99975 * 1 2 3 26 26 H 1.08998 * 109.46819 * 59.99868 * 3 2 1 27 27 H 1.09003 * 109.47166 * 300.00025 * 3 2 1 28 28 H 1.09002 * 109.46530 * 304.99995 * 4 3 2 29 29 H 1.08996 * 109.47037 * 185.00124 * 4 3 2 30 30 H 1.09002 * 109.58751 * 246.15665 * 9 8 6 31 31 H 1.08996 * 109.58750 * 6.43850 * 9 8 6 32 32 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 33 33 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 34 34 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 35 35 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 36 36 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 37 37 H 0.97001 * 120.00836 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.50232 * 301.42239 * 21 11 10 39 39 H 1.09007 * 109.52628 * 181.33900 * 21 11 10 40 40 H 1.08994 * 109.58580 * 353.42544 * 22 8 6 41 41 H 1.09006 * 109.57831 * 113.70037 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9717 0.5698 -1.2416 6 6 5.2963 0.3897 -1.4018 7 8 6.0667 0.7363 -0.5284 8 7 5.7680 -0.1751 -2.5310 9 6 7.2107 -0.3777 -2.7206 10 6 7.4643 -1.8496 -3.0614 11 6 6.6073 -2.2408 -4.2713 12 6 6.8806 -3.7010 -4.6376 13 6 8.3097 -3.8454 -5.0936 14 1 8.9580 -2.9821 -5.1200 15 6 8.7893 -5.0799 -5.4771 16 7 7.9998 -6.1311 -5.4455 17 14 10.5605 -5.2589 -6.0430 18 1 11.4743 -4.8430 -4.9487 19 1 10.8258 -6.6761 -6.3984 20 1 10.7895 -4.3996 -7.2324 21 6 5.1257 -2.0699 -3.9280 22 6 4.8489 -0.5999 -3.5958 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5682 0.8410 29 1 3.9785 2.1765 0.0889 30 1 7.5641 0.2524 -3.5368 31 1 7.7397 -0.1186 -1.8036 32 1 8.5190 -1.9920 -3.2970 33 1 7.1944 -2.4722 -2.2083 34 1 6.8602 -1.6009 -5.1167 35 1 6.7120 -4.3320 -3.7650 36 1 6.2102 -4.0056 -5.4412 37 1 8.3371 -6.9995 -5.7156 38 1 4.8778 -2.6906 -3.0671 39 1 4.5171 -2.3709 -4.7808 40 1 3.8194 -0.4896 -3.2554 41 1 5.0083 0.0139 -4.4824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399453952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:42 Heat of formation + Delta-G solvation = -141.921287 kcal Electronic energy + Delta-G solvation = -21235.288277 eV Core-core repulsion = 17921.974377 eV Total energy + Delta-G solvation = -3313.313900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.47846 -38.45716 -37.75163 -36.07868 -34.04056 -32.13364 -30.98615 -30.51394 -28.03593 -26.60946 -24.72109 -23.41063 -22.62086 -21.92995 -20.45177 -19.21613 -17.82904 -17.20164 -16.95694 -16.24528 -16.02362 -15.85583 -15.27129 -14.52350 -14.45548 -14.01590 -13.79422 -13.37500 -13.17841 -12.89370 -12.73769 -12.55260 -12.14881 -11.84444 -11.83282 -11.56823 -11.15480 -11.01030 -10.75202 -10.67413 -10.63120 -10.44118 -10.35586 -10.06303 -10.01068 -9.60834 -9.25540 -8.95885 -8.40712 -8.32429 -5.97627 -3.99594 2.24224 2.98042 3.34445 3.39241 3.41244 3.42824 3.94336 4.47433 4.62471 4.82783 4.95494 5.03045 5.08364 5.15492 5.25730 5.34342 5.37397 5.41244 5.45318 5.46531 5.60504 5.71157 5.86854 6.00152 6.12358 6.28782 6.37069 6.42755 6.59623 6.68305 6.81057 7.00663 7.03734 7.13850 7.55122 7.68856 7.84032 8.02109 8.43495 8.44596 9.06720 9.64125 11.13631 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031487 B = 0.003545 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.052394 B = 7897.152693 C = 8470.486517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.088 3.912 5 O -0.362 6.362 6 C 0.649 3.351 7 O -0.584 6.584 8 N -0.586 5.586 9 C 0.124 3.876 10 C -0.119 4.119 11 C -0.082 4.082 12 C 0.028 3.972 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.130 4.130 22 C 0.112 3.888 23 H 0.088 0.912 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 15.385 8.466 21.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.015 4.015 4 C 0.013 3.987 5 O -0.276 6.276 6 C 0.403 3.597 7 O -0.474 6.474 8 N -0.326 5.326 9 C 0.003 3.997 10 C -0.157 4.157 11 C -0.100 4.100 12 C -0.009 4.009 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.168 4.168 22 C -0.010 4.010 23 H 0.106 0.894 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.935 15.157 8.737 21.757 hybrid contribution 0.748 -0.004 -0.279 0.798 sum -12.187 15.153 8.458 21.205 Atomic orbital electron populations 1.22762 0.80833 1.03099 0.99850 1.88005 1.19810 1.26990 1.95385 1.22630 0.91578 0.85874 1.01386 1.22934 0.92534 0.98572 0.84650 1.86272 1.23622 1.76267 1.41420 1.18013 0.80883 0.77950 0.82835 1.90951 1.57345 1.56559 1.42552 1.47054 1.08525 1.61152 1.15825 1.21853 0.77223 0.98474 1.02135 1.21993 1.02128 0.92713 0.98876 1.21264 0.91503 1.01120 0.96161 1.19120 0.96492 0.88780 0.96525 1.21211 0.96788 0.93857 1.43663 0.92612 1.25016 0.97442 0.96110 0.95875 1.69947 1.35609 0.99578 1.48398 0.86706 0.85433 0.76947 0.79187 1.20253 1.21395 1.20311 1.22041 0.98992 0.94082 1.01711 1.21820 0.93009 0.96596 0.89573 0.89392 0.94155 0.93913 0.90899 0.92046 0.90331 0.89706 0.91392 0.89385 0.89406 0.92196 0.92250 0.96601 0.96576 0.93004 0.91910 0.90950 0.89720 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.24 10.67 -38.80 -0.41 -4.66 16 3 C 0.06 0.53 6.33 37.16 0.24 0.77 16 4 C 0.09 0.98 5.85 37.16 0.22 1.20 16 5 O -0.36 -5.25 8.83 -43.10 -0.38 -5.63 16 6 C 0.65 10.85 8.43 54.06 0.46 11.30 16 7 O -0.58 -11.01 15.54 -19.28 -0.30 -11.31 16 8 N -0.59 -9.39 2.97 -178.53 -0.53 -9.92 16 9 C 0.12 1.99 6.42 -3.71 -0.02 1.96 16 10 C -0.12 -2.20 5.21 -26.45 -0.14 -2.34 16 11 C -0.08 -1.60 2.10 -90.42 -0.19 -1.79 16 12 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 13 C -0.52 -14.15 8.39 -34.44 -0.29 -14.44 16 14 H 0.06 1.47 7.06 -52.49 -0.37 1.09 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.79 13.28 55.43 0.74 -26.05 16 17 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C -0.13 -2.17 5.36 -26.59 -0.14 -2.31 16 22 C 0.11 1.62 6.45 -3.69 -0.02 1.59 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 32 H 0.09 1.70 6.93 -51.93 -0.36 1.34 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 40 H 0.08 1.14 6.93 -51.93 -0.36 0.78 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -32.77 335.97 -6.78 -39.55 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.93 Total: -2.88 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 0.99 Total: -0.63 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.21 Total: -35.97 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.09 Total: -21.60 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.77 -6.78 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399453952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.369 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds