Wall clock time and date at job start Mon Mar 30 2020 04:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00117 * 2 1 4 4 C 1.53000 * 109.47417 * 180.02562 * 3 2 1 5 5 O 1.45198 * 109.46977 * 64.99544 * 4 3 2 6 6 C 1.34636 * 116.99855 * 180.02562 * 5 4 3 7 7 O 1.21509 * 120.00384 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00274 * 180.02562 * 6 5 4 9 9 C 1.46919 * 120.63395 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.29715 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 C 1.50701 * 109.47085 * 295.13082 * 12 11 10 14 14 H 1.07998 * 120.00293 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99472 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00682 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99519 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47133 * 60.00060 * 17 15 13 19 19 H 1.48503 * 109.46942 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47295 * 299.99976 * 17 15 13 21 21 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 22 22 C 1.46933 * 120.62602 * 359.97266 * 8 6 5 23 23 H 1.09004 * 109.47482 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47340 * 299.99877 * 1 2 3 25 25 H 1.08996 * 109.47355 * 59.99975 * 1 2 3 26 26 H 1.08998 * 109.46819 * 59.99868 * 3 2 1 27 27 H 1.09003 * 109.47166 * 300.00025 * 3 2 1 28 28 H 1.09002 * 109.46530 * 304.99995 * 4 3 2 29 29 H 1.08996 * 109.47037 * 185.00124 * 4 3 2 30 30 H 1.09002 * 109.58751 * 246.15665 * 9 8 6 31 31 H 1.08996 * 109.58750 * 6.43850 * 9 8 6 32 32 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 33 33 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 34 34 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 35 35 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 36 36 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 37 37 H 0.97001 * 120.00836 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.50232 * 301.42239 * 21 11 10 39 39 H 1.09007 * 109.52628 * 181.33900 * 21 11 10 40 40 H 1.08994 * 109.58580 * 353.42544 * 22 8 6 41 41 H 1.09006 * 109.57831 * 113.70037 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9717 0.5698 -1.2416 6 6 5.2963 0.3897 -1.4018 7 8 6.0667 0.7363 -0.5284 8 7 5.7680 -0.1751 -2.5310 9 6 7.2107 -0.3777 -2.7206 10 6 7.4643 -1.8496 -3.0614 11 6 6.6073 -2.2408 -4.2713 12 6 6.8806 -3.7010 -4.6376 13 6 8.3097 -3.8454 -5.0936 14 1 8.9580 -2.9821 -5.1200 15 6 8.7893 -5.0799 -5.4771 16 7 7.9998 -6.1311 -5.4455 17 14 10.5605 -5.2589 -6.0430 18 1 11.4743 -4.8430 -4.9487 19 1 10.8258 -6.6761 -6.3984 20 1 10.7895 -4.3996 -7.2324 21 6 5.1257 -2.0699 -3.9280 22 6 4.8489 -0.5999 -3.5958 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5682 0.8410 29 1 3.9785 2.1765 0.0889 30 1 7.5641 0.2524 -3.5368 31 1 7.7397 -0.1186 -1.8036 32 1 8.5190 -1.9920 -3.2970 33 1 7.1944 -2.4722 -2.2083 34 1 6.8602 -1.6009 -5.1167 35 1 6.7120 -4.3320 -3.7650 36 1 6.2102 -4.0056 -5.4412 37 1 8.3371 -6.9995 -5.7156 38 1 4.8778 -2.6906 -3.0671 39 1 4.5171 -2.3709 -4.7808 40 1 3.8194 -0.4896 -3.2554 41 1 5.0083 0.0139 -4.4824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399453952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:41 Heat of formation + Delta-G solvation = -162.865505 kcal Electronic energy + Delta-G solvation = -21236.196486 eV Core-core repulsion = 17921.974377 eV Total energy + Delta-G solvation = -3314.222109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70922 -39.56621 -38.73298 -37.29815 -35.76542 -34.01767 -32.14769 -31.54393 -29.80565 -27.24960 -26.41101 -24.63190 -23.86851 -23.31540 -21.86102 -20.65317 -19.12569 -18.35366 -18.18826 -17.96535 -17.03043 -16.61218 -16.53625 -16.08385 -15.61679 -15.27049 -15.15445 -14.82809 -14.60314 -14.20541 -14.03828 -13.76121 -13.46796 -13.22496 -13.00200 -12.74742 -12.60608 -12.46933 -12.33128 -12.26677 -12.13412 -11.85621 -11.67081 -11.60895 -11.31133 -11.04091 -10.83054 -10.65366 -10.49799 -9.74222 -8.14735 -6.24043 1.10518 1.42454 1.44795 1.52106 1.70790 2.44151 2.78848 2.85253 3.18908 3.88368 3.94453 4.01617 4.06821 4.11573 4.18425 4.33676 4.39883 4.41199 4.52257 4.57552 4.58446 4.63579 4.68699 4.83996 4.88499 4.89995 4.97080 5.06008 5.27676 5.28738 5.34561 5.39111 5.54459 5.58908 5.82416 5.91839 6.21048 6.28922 6.32112 6.92751 7.18524 7.44534 8.97028 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.031487 B = 0.003545 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.052394 B = 7897.152693 C = 8470.486517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.065 3.935 4 C 0.079 3.921 5 O -0.364 6.364 6 C 0.647 3.353 7 O -0.610 6.610 8 N -0.589 5.589 9 C 0.133 3.867 10 C -0.112 4.112 11 C -0.074 4.074 12 C 0.033 3.967 13 C -0.529 4.529 14 H 0.066 0.934 15 C -0.003 4.003 16 N -0.937 5.937 17 Si 0.959 3.041 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.124 4.124 22 C 0.121 3.879 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.070 0.930 35 H -0.018 1.018 36 H -0.008 1.008 37 H 0.261 0.739 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.473 17.544 8.166 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.011 4.011 4 C 0.005 3.995 5 O -0.277 6.277 6 C 0.402 3.598 7 O -0.503 6.503 8 N -0.329 5.329 9 C 0.012 3.988 10 C -0.150 4.150 11 C -0.092 4.092 12 C -0.005 4.005 13 C -0.567 4.567 14 H 0.085 0.915 15 C -0.200 4.200 16 N -0.578 5.578 17 Si 0.784 3.216 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.162 4.162 22 C -0.001 4.001 23 H 0.106 0.894 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.123 0.877 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.001 0.999 36 H 0.010 0.990 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.211 17.337 8.437 23.373 hybrid contribution 0.744 -0.702 -0.140 1.033 sum -12.466 16.635 8.297 22.383 Atomic orbital electron populations 1.22917 0.79138 1.03663 1.01234 1.87947 1.21813 1.28519 1.95712 1.22756 0.89474 0.85418 1.03464 1.23296 0.94522 0.98789 0.82920 1.86284 1.22080 1.76350 1.43001 1.18138 0.81464 0.77699 0.82492 1.90927 1.58204 1.57746 1.43410 1.47136 1.08668 1.60992 1.16104 1.21724 0.77647 0.96583 1.02828 1.21855 1.01186 0.94472 0.97509 1.21116 0.93842 0.97316 0.96960 1.19017 0.95286 0.92008 0.94144 1.21667 0.97899 0.94234 1.42870 0.91545 1.25950 1.02037 0.95887 0.96142 1.70095 1.37818 1.00122 1.49762 0.85591 0.79935 0.76926 0.79145 1.19308 1.21415 1.19010 1.21946 0.96932 0.95957 1.01396 1.21848 0.93401 0.94752 0.90073 0.89386 0.92317 0.92920 0.87744 0.90827 0.91666 0.88138 0.88943 0.89732 0.90426 0.94271 0.91200 0.99944 0.99009 0.93047 0.93657 0.89975 0.88386 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -8.68 10.67 -145.56 -1.55 -10.24 16 3 C 0.06 0.97 6.33 71.98 0.46 1.43 16 4 C 0.08 1.64 5.85 71.98 0.42 2.07 16 5 O -0.36 -10.00 8.83 -52.80 -0.47 -10.47 16 6 C 0.65 20.84 8.43 129.79 1.09 21.93 16 7 O -0.61 -22.59 15.54 19.81 0.31 -22.28 16 8 N -0.59 -17.90 2.97 -949.17 -2.82 -20.72 16 9 C 0.13 4.07 6.42 86.36 0.55 4.62 16 10 C -0.11 -4.12 5.21 30.78 0.16 -3.96 16 11 C -0.07 -2.87 2.10 -10.66 -0.02 -2.89 16 12 C 0.03 1.68 4.45 29.85 0.13 1.81 16 13 C -0.53 -29.18 8.39 25.60 0.21 -28.97 16 14 H 0.07 3.45 7.06 -2.91 -0.02 3.43 16 15 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 16 N -0.94 -57.36 13.28 21.45 0.28 -57.07 16 17 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 21 C -0.12 -4.05 5.36 30.68 0.16 -3.88 16 22 C 0.12 3.20 6.45 86.37 0.56 3.75 16 23 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 2.68 7.00 -2.39 -0.02 2.67 16 32 H 0.08 2.99 6.93 -2.39 -0.02 2.98 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 36 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 37 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 40 H 0.10 2.39 6.93 -2.39 -0.02 2.37 16 41 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -71.61 335.97 4.21 -67.40 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.99 Total: 9.48 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.44 Total: -2.22 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -2.54 Total: -77.79 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -1.71 Total: -42.99 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -71.61 4.21 -67.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399453952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.467 kcal (2) G-P(sol) polarization free energy of solvation -71.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds