Wall clock time and date at job start Mon Mar 30 2020 04:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99510 * 2 1 4 4 C 1.52999 * 109.47085 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47192 * 65.00039 * 4 3 2 6 6 C 1.37100 * 119.99940 * 264.55283 * 5 4 3 7 7 H 1.07996 * 119.99626 * 145.64821 * 6 5 4 8 8 C 1.38948 * 119.99992 * 325.64828 * 6 5 4 9 9 N 1.31411 * 120.00248 * 338.16525 * 8 6 5 10 10 Si 1.86797 * 119.99952 * 158.16230 * 8 6 5 11 11 H 1.48498 * 109.47290 * 89.99808 * 10 8 6 12 12 H 1.48500 * 109.47458 * 210.00121 * 10 8 6 13 13 H 1.48502 * 109.47055 * 329.99644 * 10 8 6 14 14 C 1.34768 * 119.99749 * 84.55212 * 5 4 3 15 15 O 1.21289 * 120.00662 * 359.97438 * 14 5 4 16 16 C 1.50704 * 119.99956 * 180.02562 * 14 5 4 17 17 C 1.53001 * 109.47122 * 179.97438 * 16 14 5 18 18 C 1.53005 * 109.46936 * 180.02562 * 17 16 14 19 19 H 1.08994 * 110.98849 * 57.73929 * 18 17 16 20 20 C 1.55306 * 111.16107 * 181.96696 * 18 17 16 21 21 C 1.54386 * 102.25073 * 152.06578 * 20 18 17 22 22 O 1.43237 * 107.59148 * 338.64491 * 21 20 18 23 23 C 1.43652 * 109.96784 * 358.28414 * 22 21 20 24 24 H 1.09002 * 109.47429 * 299.99914 * 1 2 3 25 25 H 1.08996 * 109.47312 * 60.00140 * 1 2 3 26 26 H 1.09001 * 109.46775 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47272 * 60.00622 * 3 2 1 28 28 H 1.08996 * 109.47673 * 299.99659 * 3 2 1 29 29 H 1.09000 * 109.47208 * 304.99915 * 4 3 2 30 30 H 1.08999 * 109.47801 * 185.00219 * 4 3 2 31 31 H 0.97003 * 120.00288 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.46966 * 59.99741 * 16 14 5 33 33 H 1.09007 * 109.46901 * 300.00048 * 16 14 5 34 34 H 1.08998 * 109.47385 * 60.00029 * 17 16 14 35 35 H 1.08995 * 109.47030 * 299.99496 * 17 16 14 36 36 H 1.09000 * 110.84373 * 33.88258 * 20 18 17 37 37 H 1.08989 * 110.84766 * 270.25572 * 20 18 17 38 38 H 1.09000 * 109.82716 * 219.13145 * 21 20 18 39 39 H 1.08996 * 109.83028 * 98.16010 * 21 20 18 40 40 H 1.09007 * 110.30565 * 143.34410 * 23 22 21 41 41 H 1.08997 * 110.31075 * 265.41056 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.2045 -0.7861 -1.3053 7 1 3.9849 -1.3363 -2.2083 8 6 4.7190 -1.4472 -0.1967 9 7 5.3776 -0.7762 0.7214 10 14 4.4745 -3.2898 -0.0114 11 1 5.6056 -4.0063 -0.6534 12 1 4.4217 -3.6396 1.4309 13 1 3.2016 -3.6883 -0.6642 14 6 4.1556 1.3219 -2.3530 15 8 3.9526 2.5168 -2.3067 16 6 4.6079 0.6839 -3.6412 17 6 4.7328 1.7564 -4.7251 18 6 5.1915 1.1085 -6.0332 19 1 4.4982 0.3278 -6.3462 20 6 5.3789 2.1715 -7.1498 21 6 6.4588 1.5224 -8.0420 22 8 7.1528 0.5541 -7.2468 23 6 6.6339 0.5567 -5.9072 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.8514 0.5684 0.8409 30 1 3.9784 2.1766 0.0890 31 1 5.7371 -1.2377 1.4951 32 1 3.8780 -0.0635 -3.9523 33 1 5.5756 0.2055 -3.4895 34 1 5.4625 2.5040 -4.4142 35 1 3.7650 2.2342 -4.8767 36 1 5.7351 3.1134 -6.7327 37 1 4.4529 2.3175 -7.7057 38 1 7.1569 2.2836 -8.3904 39 1 5.9886 1.0323 -8.8945 40 1 6.6176 -0.4566 -5.5059 41 1 7.2346 1.2057 -5.2701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401316674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:27 Heat of formation + Delta-G solvation = -134.653429 kcal Electronic energy + Delta-G solvation = -21733.996821 eV Core-core repulsion = 18420.998079 eV Total energy + Delta-G solvation = -3312.998742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.42524 -38.57379 -36.96458 -34.81615 -33.97230 -31.54416 -30.77313 -29.38985 -27.99307 -25.82723 -24.78813 -23.94446 -22.26068 -21.40507 -20.09830 -18.95075 -16.89743 -16.53728 -16.23205 -15.62549 -15.43720 -15.13918 -14.92484 -14.42919 -14.34472 -14.08722 -13.86612 -13.39324 -13.11816 -12.76445 -12.34347 -11.99186 -11.69221 -11.56414 -11.44220 -11.21016 -11.08697 -11.00449 -10.83196 -10.69695 -10.58519 -10.42338 -10.33476 -10.10269 -9.97689 -9.42883 -9.11394 -8.94897 -8.37770 -7.49028 -6.31722 -3.95060 3.17501 3.27929 3.34110 3.93205 3.97879 4.19357 4.51259 4.56548 4.72694 4.93147 5.02915 5.12062 5.25859 5.38172 5.59819 5.66240 5.70258 5.72494 5.76506 5.87618 5.92180 5.97171 5.99041 6.03858 6.09669 6.11567 6.22217 6.35671 6.37937 6.52659 6.70571 6.79683 6.81387 7.08017 7.31053 7.51322 7.83005 8.01720 8.41577 9.15614 9.56903 9.98498 10.71247 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017798 B = 0.005285 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.826426 B = 5296.575893 C = 6178.292614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.053 3.947 4 C 0.113 3.887 5 N -0.429 5.429 6 C -0.323 4.323 7 H 0.087 0.913 8 C 0.048 3.952 9 N -0.864 5.864 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.464 3.536 15 O -0.615 6.615 16 C -0.119 4.119 17 C -0.088 4.088 18 C -0.122 4.122 19 H 0.085 0.915 20 C -0.153 4.153 21 C 0.051 3.949 22 O -0.390 6.390 23 C 0.053 3.947 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.116 0.884 30 H 0.068 0.932 31 H 0.268 0.732 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.185 1.785 -8.215 8.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.146 5.146 6 C -0.451 4.451 7 H 0.105 0.895 8 C -0.157 4.157 9 N -0.501 5.501 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.254 3.746 15 O -0.503 6.503 16 C -0.159 4.159 17 C -0.126 4.126 18 C -0.140 4.140 19 H 0.103 0.897 20 C -0.190 4.190 21 C -0.025 4.025 22 O -0.310 6.310 23 C -0.023 4.023 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.908 2.011 -8.047 8.789 hybrid contribution -0.622 -0.639 0.355 0.960 sum -3.530 1.372 -7.692 8.573 Atomic orbital electron populations 1.22641 0.83488 1.01697 0.98811 1.88134 1.17325 1.27819 1.95033 1.23037 0.96682 0.84226 0.98563 1.21470 0.89070 0.99035 0.91567 1.43370 1.56159 1.07353 1.07710 1.19276 1.42138 0.82108 1.01528 0.89501 1.25218 0.94063 0.99841 0.96618 1.69905 1.31209 1.37106 1.11865 0.86165 0.78864 0.83271 0.77683 1.20598 1.20879 1.19332 1.20434 0.81201 0.86321 0.86677 1.90499 1.58052 1.15499 1.86216 1.21363 1.02973 0.98259 0.93263 1.21227 1.02097 0.97702 0.91574 1.22933 0.97291 0.97763 0.96047 0.89691 1.23180 0.99368 0.99472 0.96994 1.23076 0.93853 0.91321 0.94268 1.88372 1.60885 1.59528 1.22213 1.23547 0.92967 1.02070 0.83711 0.95175 0.95030 0.90455 0.94392 0.94134 0.86621 0.91401 0.92164 0.90521 0.89599 0.91403 0.91470 0.90367 0.90250 0.91892 0.91717 0.89335 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.85 10.44 -35.23 -0.37 -8.22 16 3 C 0.05 1.11 6.24 37.16 0.23 1.34 16 4 C 0.11 2.71 5.29 -4.04 -0.02 2.69 16 5 N -0.43 -10.75 2.51 -114.81 -0.29 -11.04 16 6 C -0.32 -8.18 8.48 -14.93 -0.13 -8.30 16 7 H 0.09 2.12 6.98 -52.49 -0.37 1.75 16 8 C 0.05 1.21 4.93 -17.47 -0.09 1.13 16 9 N -0.86 -22.86 11.34 55.50 0.63 -22.23 16 10 Si 0.91 20.00 29.61 -169.99 -5.03 14.96 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 14 C 0.46 11.10 7.60 -10.99 -0.08 11.01 16 15 O -0.61 -15.81 15.65 5.55 0.09 -15.73 16 16 C -0.12 -2.28 4.21 -27.88 -0.12 -2.40 16 17 C -0.09 -1.44 4.03 -26.73 -0.11 -1.55 16 18 C -0.12 -1.64 3.12 -88.37 -0.28 -1.92 16 19 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.15 -1.75 6.50 -24.78 -0.16 -1.91 16 21 C 0.05 0.60 7.79 37.88 0.30 0.89 16 22 O -0.39 -5.75 11.36 -35.23 -0.40 -6.15 16 23 C 0.05 0.75 6.45 38.18 0.25 1.00 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.12 2.99 5.37 -51.93 -0.28 2.71 16 30 H 0.07 1.65 7.59 -51.93 -0.39 1.25 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.08 1.41 7.65 -51.93 -0.40 1.01 16 33 H 0.09 1.65 7.44 -51.93 -0.39 1.26 16 34 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 35 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 37 H 0.08 0.79 8.14 -51.94 -0.42 0.36 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -29.78 334.77 -6.28 -36.05 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.85 Total: 3.70 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 0.91 Total: 3.60 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.34 Total: -33.27 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.68 Total: -30.09 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.78 -6.28 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401316674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.600 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds