Wall clock time and date at job start Mon Mar 30 2020 04:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99510 * 2 1 4 4 C 1.52999 * 109.47085 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47192 * 65.00039 * 4 3 2 6 6 C 1.37100 * 119.99940 * 264.55283 * 5 4 3 7 7 H 1.07996 * 119.99626 * 145.64821 * 6 5 4 8 8 C 1.38948 * 119.99992 * 325.64828 * 6 5 4 9 9 N 1.31411 * 120.00248 * 338.16525 * 8 6 5 10 10 Si 1.86797 * 119.99952 * 158.16230 * 8 6 5 11 11 H 1.48498 * 109.47290 * 89.99808 * 10 8 6 12 12 H 1.48500 * 109.47458 * 210.00121 * 10 8 6 13 13 H 1.48502 * 109.47055 * 329.99644 * 10 8 6 14 14 C 1.34768 * 119.99749 * 84.55212 * 5 4 3 15 15 O 1.21289 * 120.00662 * 359.97438 * 14 5 4 16 16 C 1.50704 * 119.99956 * 180.02562 * 14 5 4 17 17 C 1.53001 * 109.47122 * 179.97438 * 16 14 5 18 18 C 1.53005 * 109.46936 * 180.02562 * 17 16 14 19 19 H 1.08994 * 110.98849 * 57.73929 * 18 17 16 20 20 C 1.55306 * 111.16107 * 181.96696 * 18 17 16 21 21 C 1.54386 * 102.25073 * 152.06578 * 20 18 17 22 22 O 1.43237 * 107.59148 * 338.64491 * 21 20 18 23 23 C 1.43652 * 109.96784 * 358.28414 * 22 21 20 24 24 H 1.09002 * 109.47429 * 299.99914 * 1 2 3 25 25 H 1.08996 * 109.47312 * 60.00140 * 1 2 3 26 26 H 1.09001 * 109.46775 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47272 * 60.00622 * 3 2 1 28 28 H 1.08996 * 109.47673 * 299.99659 * 3 2 1 29 29 H 1.09000 * 109.47208 * 304.99915 * 4 3 2 30 30 H 1.08999 * 109.47801 * 185.00219 * 4 3 2 31 31 H 0.97003 * 120.00288 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.46966 * 59.99741 * 16 14 5 33 33 H 1.09007 * 109.46901 * 300.00048 * 16 14 5 34 34 H 1.08998 * 109.47385 * 60.00029 * 17 16 14 35 35 H 1.08995 * 109.47030 * 299.99496 * 17 16 14 36 36 H 1.09000 * 110.84373 * 33.88258 * 20 18 17 37 37 H 1.08989 * 110.84766 * 270.25572 * 20 18 17 38 38 H 1.09000 * 109.82716 * 219.13145 * 21 20 18 39 39 H 1.08996 * 109.83028 * 98.16010 * 21 20 18 40 40 H 1.09007 * 110.30565 * 143.34410 * 23 22 21 41 41 H 1.08997 * 110.31075 * 265.41056 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.2045 -0.7861 -1.3053 7 1 3.9849 -1.3363 -2.2083 8 6 4.7190 -1.4472 -0.1967 9 7 5.3776 -0.7762 0.7214 10 14 4.4745 -3.2898 -0.0114 11 1 5.6056 -4.0063 -0.6534 12 1 4.4217 -3.6396 1.4309 13 1 3.2016 -3.6883 -0.6642 14 6 4.1556 1.3219 -2.3530 15 8 3.9526 2.5168 -2.3067 16 6 4.6079 0.6839 -3.6412 17 6 4.7328 1.7564 -4.7251 18 6 5.1915 1.1085 -6.0332 19 1 4.4982 0.3278 -6.3462 20 6 5.3789 2.1715 -7.1498 21 6 6.4588 1.5224 -8.0420 22 8 7.1528 0.5541 -7.2468 23 6 6.6339 0.5567 -5.9072 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.8514 0.5684 0.8409 30 1 3.9784 2.1766 0.0890 31 1 5.7371 -1.2377 1.4951 32 1 3.8780 -0.0635 -3.9523 33 1 5.5756 0.2055 -3.4895 34 1 5.4625 2.5040 -4.4142 35 1 3.7650 2.2342 -4.8767 36 1 5.7351 3.1134 -6.7327 37 1 4.4529 2.3175 -7.7057 38 1 7.1569 2.2836 -8.3904 39 1 5.9886 1.0323 -8.8945 40 1 6.6176 -0.4566 -5.5059 41 1 7.2346 1.2057 -5.2701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401316674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:27 Heat of formation + Delta-G solvation = -153.352954 kcal Electronic energy + Delta-G solvation = -21734.807693 eV Core-core repulsion = 18420.998079 eV Total energy + Delta-G solvation = -3313.809614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75405 -40.15473 -38.57024 -36.63999 -35.34705 -33.48206 -32.05867 -30.87834 -29.27908 -27.28134 -26.61323 -25.39679 -23.57410 -22.73572 -21.31937 -20.82437 -18.64039 -17.93506 -17.65886 -17.14504 -16.98966 -16.59118 -16.27811 -16.05388 -16.00805 -15.64570 -15.32818 -14.54190 -14.45071 -14.30199 -13.72589 -13.60719 -13.25166 -13.17161 -12.90256 -12.75367 -12.53576 -12.47931 -12.42237 -12.13276 -12.07185 -11.88380 -11.75123 -11.57026 -11.41412 -10.96859 -10.54939 -10.45744 -10.26334 -9.43897 -8.24534 -5.93275 1.43878 1.51326 1.62279 2.06983 2.37703 2.88698 2.99390 3.06377 3.23497 3.55529 3.84873 3.98271 4.20774 4.25437 4.26965 4.32001 4.41275 4.45731 4.53127 4.54716 4.62077 4.63479 4.71835 4.79130 4.81513 4.85249 4.87133 4.95377 5.00710 5.08788 5.18165 5.32085 5.38041 5.43830 5.56373 6.03058 6.06519 6.40512 6.47002 7.20942 7.66182 8.07533 8.79150 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.017798 B = 0.005285 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.826426 B = 5296.575893 C = 6178.292614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.065 3.935 4 C 0.109 3.891 5 N -0.441 5.441 6 C -0.333 4.333 7 H 0.095 0.905 8 C 0.008 3.992 9 N -0.895 5.895 10 Si 0.976 3.024 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.449 3.551 15 O -0.639 6.639 16 C -0.110 4.110 17 C -0.075 4.075 18 C -0.115 4.115 19 H 0.096 0.904 20 C -0.147 4.147 21 C 0.046 3.954 22 O -0.410 6.410 23 C 0.052 3.948 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.269 0.731 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.190 0.899 -9.470 10.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C -0.012 4.012 4 C -0.015 4.015 5 N -0.158 5.158 6 C -0.461 4.461 7 H 0.112 0.888 8 C -0.194 4.194 9 N -0.533 5.533 10 Si 0.800 3.200 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.240 3.760 15 O -0.529 6.529 16 C -0.150 4.150 17 C -0.113 4.113 18 C -0.134 4.134 19 H 0.114 0.886 20 C -0.184 4.184 21 C -0.030 4.030 22 O -0.330 6.330 23 C -0.025 4.025 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.921 1.126 -9.315 10.169 hybrid contribution -0.329 -0.309 0.760 0.884 sum -4.250 0.817 -8.555 9.587 Atomic orbital electron populations 1.22892 0.80649 1.03359 1.00255 1.88061 1.20461 1.27765 1.95303 1.22791 0.94533 0.84581 0.99317 1.21412 0.91413 0.97699 0.90982 1.43614 1.56359 1.07629 1.08188 1.19545 1.42139 0.82352 1.02054 0.88778 1.25979 0.93590 1.03660 0.96215 1.70005 1.32156 1.38713 1.12431 0.85210 0.78935 0.78485 0.77351 1.19727 1.21091 1.18958 1.21251 0.80608 0.86238 0.87862 1.90467 1.59002 1.16580 1.86828 1.21350 1.02816 0.99047 0.91760 1.21085 1.01554 0.96578 0.92123 1.22839 0.96906 0.98558 0.95080 0.88593 1.23175 1.00394 0.98588 0.96274 1.23290 0.94103 0.91341 0.94286 1.88350 1.61689 1.60577 1.22368 1.23512 0.93268 1.01895 0.83776 0.93025 0.94207 0.88759 0.91753 0.95051 0.88440 0.92806 0.92104 0.89355 0.89737 0.92839 0.91855 0.90530 0.88154 0.90630 0.89950 0.89434 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.69 10.44 -148.98 -1.56 -18.24 16 3 C 0.07 2.74 6.24 71.98 0.45 3.19 16 4 C 0.11 5.37 5.29 86.38 0.46 5.82 16 5 N -0.44 -22.39 2.51 -635.54 -1.60 -23.99 16 6 C -0.33 -16.88 8.48 84.04 0.71 -16.16 16 7 H 0.09 4.52 6.98 -2.91 -0.02 4.50 16 8 C 0.01 0.39 4.93 84.93 0.42 0.81 16 9 N -0.89 -47.98 11.34 21.66 0.25 -47.74 16 10 Si 0.98 40.57 29.61 68.60 2.03 42.60 16 11 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 12 H -0.29 -11.86 7.11 99.48 0.71 -11.16 16 13 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 14 C 0.45 21.76 7.60 87.66 0.67 22.43 16 15 O -0.64 -33.47 15.65 -3.06 -0.05 -33.51 16 16 C -0.11 -4.20 4.21 29.85 0.13 -4.08 16 17 C -0.08 -2.42 4.03 30.60 0.12 -2.29 16 18 C -0.12 -2.92 3.12 -9.33 -0.03 -2.95 16 19 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 20 C -0.15 -3.02 6.50 31.86 0.21 -2.81 16 21 C 0.05 0.95 7.79 72.45 0.56 1.51 16 22 O -0.41 -11.44 11.36 -148.98 -1.69 -13.13 16 23 C 0.05 1.42 6.45 72.65 0.47 1.89 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.10 5.17 5.37 -2.39 -0.01 5.16 16 30 H 0.05 2.71 7.59 -2.39 -0.02 2.69 16 31 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 32 H 0.09 3.15 7.65 -2.39 -0.02 3.13 16 33 H 0.08 3.24 7.44 -2.38 -0.02 3.23 16 34 H 0.05 1.86 8.06 -2.39 -0.02 1.84 16 35 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 36 H 0.08 1.61 8.03 -2.39 -0.02 1.59 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 2.38 8.10 -2.38 -0.02 2.36 16 41 H 0.05 1.58 8.00 -2.39 -0.02 1.56 16 Total: -1.00 -63.71 334.77 3.79 -59.92 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.99 Total: 24.74 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.41 Total: 9.35 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -1.35 Total: -71.73 kcal Atomic # 8 Polarization: -61.59 SS G_CDS: -3.29 Total: -64.89 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -63.71 3.79 -59.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401316674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.435 kcal (2) G-P(sol) polarization free energy of solvation -63.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds