Wall clock time and date at job start Mon Mar 30 2020 04:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00099 * 2 1 4 4 C 1.53000 * 109.46934 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47499 * 65.00113 * 4 3 2 6 6 C 1.37095 * 119.99829 * 270.00236 * 5 4 3 7 7 H 1.08000 * 120.00154 * 140.61883 * 6 5 4 8 8 C 1.38947 * 119.99897 * 320.60779 * 6 5 4 9 9 N 1.31422 * 119.99667 * 159.11185 * 8 6 5 10 10 Si 1.86800 * 120.00321 * 339.12118 * 8 6 5 11 11 H 1.48502 * 109.47115 * 95.80850 * 10 8 6 12 12 H 1.48502 * 109.46962 * 215.80666 * 10 8 6 13 13 H 1.48490 * 109.46987 * 335.81012 * 10 8 6 14 14 C 1.34779 * 119.99838 * 89.99804 * 5 4 3 15 15 O 1.21292 * 120.00028 * 5.01648 * 14 5 4 16 16 C 1.50702 * 119.99666 * 185.00842 * 14 5 4 17 17 C 1.52998 * 109.46754 * 185.44878 * 16 14 5 18 18 O 1.42900 * 109.46904 * 178.65276 * 17 16 14 19 19 C 1.42901 * 114.00126 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47499 * 180.02562 * 19 18 17 21 21 C 1.53005 * 117.49679 * 243.62121 * 20 19 18 22 22 C 1.52994 * 117.50238 * 174.99843 * 20 19 18 23 23 H 1.09002 * 109.47359 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46623 * 299.99391 * 1 2 3 25 25 H 1.08998 * 109.47591 * 59.99564 * 1 2 3 26 26 H 1.08999 * 109.47111 * 60.00754 * 3 2 1 27 27 H 1.09001 * 109.47299 * 300.00486 * 3 2 1 28 28 H 1.08999 * 109.47114 * 304.99653 * 4 3 2 29 29 H 1.09009 * 109.46770 * 185.00641 * 4 3 2 30 30 H 0.96999 * 119.99693 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.46771 * 65.45704 * 16 14 5 32 32 H 1.08992 * 109.47375 * 305.45310 * 16 14 5 33 33 H 1.09006 * 109.46830 * 58.65705 * 17 16 14 34 34 H 1.08997 * 109.47755 * 298.65632 * 17 16 14 35 35 H 1.08996 * 109.47424 * 59.99538 * 19 18 17 36 36 H 1.09005 * 109.47101 * 300.00268 * 19 18 17 37 37 H 1.09001 * 115.55079 * 29.32136 * 20 19 18 38 38 H 1.08993 * 117.49697 * 359.97438 * 21 20 19 39 39 H 1.09002 * 117.49519 * 145.01877 * 21 20 19 40 40 H 1.08997 * 117.50056 * 214.97511 * 22 20 19 41 41 H 1.08998 * 117.50078 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0969 -0.7987 -1.3369 7 1 3.7942 -1.3131 -2.2370 8 6 4.6093 -1.5182 -0.2644 9 7 4.3592 -2.8039 -0.1562 10 14 5.6534 -0.6582 1.0238 11 1 4.7987 -0.2677 2.1737 12 1 6.7211 -1.5787 1.4907 13 1 6.2704 0.5555 0.4311 14 6 4.2616 1.3337 -2.3218 15 8 4.2426 2.5423 -2.2216 16 6 4.6050 0.6922 -3.6415 17 6 5.0164 1.7737 -4.6424 18 8 5.3721 1.1629 -5.8843 19 6 5.7749 2.0904 -6.8940 20 6 6.1301 1.3296 -8.1731 21 6 7.5777 1.4073 -8.6623 22 6 6.4750 2.1558 -9.4137 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8514 0.5681 0.8410 29 1 3.9786 2.1765 0.0890 30 1 4.7166 -3.3061 0.5927 31 1 3.7353 0.1567 -4.0223 32 1 5.4297 -0.0066 -3.5021 33 1 5.8713 2.3250 -4.2506 34 1 4.1835 2.4589 -4.7999 35 1 6.6454 2.6480 -6.5488 36 1 4.9578 2.7825 -7.0984 37 1 5.5967 0.3914 -8.3255 38 1 8.2768 2.0007 -8.0731 39 1 7.9969 0.5199 -9.1366 40 1 6.1689 1.7609 -10.3824 41 1 6.4493 3.2413 -9.3187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457208381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:35 Heat of formation + Delta-G solvation = -92.796987 kcal Electronic energy + Delta-G solvation = -21201.068769 eV Core-core repulsion = 17889.885058 eV Total energy + Delta-G solvation = -3311.183711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.07853 -38.23577 -37.09786 -36.39524 -34.80089 -31.94644 -31.24875 -29.20733 -26.82249 -25.81489 -24.77564 -23.33984 -22.51336 -21.71795 -20.66212 -18.88639 -17.15073 -16.68953 -16.22372 -15.86436 -15.77988 -15.46946 -14.99778 -14.71739 -14.52488 -14.34377 -13.93073 -13.48439 -13.05305 -12.93017 -12.50019 -12.33078 -11.81598 -11.69179 -11.64083 -11.42365 -11.18562 -10.92299 -10.87174 -10.76959 -10.66025 -10.50383 -10.13966 -10.05769 -9.89367 -9.26244 -9.14704 -9.05975 -8.57455 -7.75820 -6.37030 -3.96486 3.09893 3.25552 3.32814 3.49776 3.69399 3.82984 4.20597 4.39360 4.51348 4.74556 4.78870 4.99864 5.16359 5.28439 5.43869 5.48232 5.58322 5.61131 5.67160 5.70161 5.71379 5.75182 5.80431 5.85300 5.95110 5.95911 5.96309 6.06509 6.10666 6.18737 6.37017 6.46704 6.52799 6.66036 7.39605 7.51349 7.82026 8.15098 8.32070 9.01487 9.38882 9.69369 10.74055 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020358 B = 0.004276 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.026916 B = 6546.765768 C = 7114.352884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.056 3.944 4 C 0.100 3.900 5 N -0.453 5.453 6 C -0.332 4.332 7 H 0.103 0.897 8 C 0.076 3.924 9 N -0.856 5.856 10 Si 0.870 3.130 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.263 1.263 14 C 0.482 3.518 15 O -0.609 6.609 16 C -0.116 4.116 17 C 0.081 3.919 18 O -0.388 6.388 19 C 0.094 3.906 20 C -0.150 4.150 21 C -0.178 4.178 22 C -0.177 4.177 23 H 0.081 0.919 24 H 0.029 0.971 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.273 0.727 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 7.385 -8.583 11.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C -0.022 4.022 4 C -0.023 4.023 5 N -0.173 5.173 6 C -0.459 4.459 7 H 0.121 0.879 8 C -0.132 4.132 9 N -0.491 5.491 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.187 1.187 14 C 0.273 3.727 15 O -0.495 6.495 16 C -0.156 4.156 17 C 0.005 3.995 18 O -0.308 6.308 19 C 0.017 3.983 20 C -0.168 4.168 21 C -0.215 4.215 22 C -0.214 4.214 23 H 0.099 0.901 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.060 7.393 -8.433 11.215 hybrid contribution 0.205 0.624 0.910 1.123 sum 0.265 8.017 -7.523 10.997 Atomic orbital electron populations 1.22660 0.83090 1.02118 0.98659 1.88244 1.17611 1.26456 1.94978 1.22865 0.94952 0.85293 0.99135 1.21716 0.92177 0.99041 0.89365 1.43613 1.57390 1.07170 1.09103 1.18944 1.43177 0.78903 1.04889 0.87905 1.25225 0.95806 0.95052 0.97105 1.69770 1.40716 1.07958 1.30621 0.87037 0.80863 0.80336 0.81952 1.20197 1.21478 1.18692 1.20196 0.79584 0.86367 0.86591 1.90527 1.58437 1.14651 1.85925 1.21160 1.04127 0.98405 0.91863 1.22213 0.99171 0.95234 0.82928 1.87829 1.87142 1.33810 1.21984 1.21915 0.98288 0.91123 0.86927 1.22168 0.98985 1.01905 0.93757 1.23061 0.91763 1.02807 1.03895 1.22959 1.03748 0.98865 0.95842 0.90053 0.95251 0.94943 0.93939 0.93524 0.90804 0.89695 0.91714 0.89202 0.88191 0.93079 0.93073 0.93435 0.93175 0.86778 0.88709 0.88676 0.88556 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.67 10.18 -35.23 -0.36 -8.03 16 3 C 0.06 1.11 6.28 37.16 0.23 1.34 16 4 C 0.10 2.25 4.67 -4.04 -0.02 2.23 16 5 N -0.45 -11.01 2.12 -114.81 -0.24 -11.25 16 6 C -0.33 -8.74 8.43 -14.94 -0.13 -8.86 16 7 H 0.10 2.85 7.45 -52.49 -0.39 2.46 16 8 C 0.08 2.03 5.32 -17.46 -0.09 1.94 16 9 N -0.86 -24.02 13.96 55.50 0.77 -23.25 16 10 Si 0.87 20.75 25.01 -169.99 -4.25 16.50 16 11 H -0.27 -6.35 6.72 56.52 0.38 -5.97 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.48 11.21 7.62 -10.98 -0.08 11.13 16 15 O -0.61 -14.83 15.55 5.55 0.09 -14.75 16 16 C -0.12 -2.34 4.72 -27.88 -0.13 -2.48 16 17 C 0.08 1.45 5.23 37.16 0.19 1.65 16 18 O -0.39 -6.56 10.34 -35.23 -0.36 -6.92 16 19 C 0.09 1.25 6.22 37.16 0.23 1.48 16 20 C -0.15 -1.73 6.06 -90.62 -0.55 -2.28 16 21 C -0.18 -1.76 10.18 -26.73 -0.27 -2.03 16 22 C -0.18 -1.60 10.25 -26.73 -0.27 -1.87 16 23 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.72 3.42 -51.93 -0.18 1.54 16 29 H 0.08 1.81 7.36 -51.92 -0.38 1.43 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.09 1.78 8.04 -51.93 -0.42 1.37 16 32 H 0.10 2.07 7.86 -51.93 -0.41 1.66 16 33 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 34 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.05 0.60 7.88 -51.93 -0.41 0.19 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.09 0.90 8.03 -51.93 -0.42 0.49 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -30.30 340.04 -5.84 -36.13 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.83 Total: 2.56 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 0.22 Total: 3.88 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.53 Total: -34.51 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.64 Total: -29.70 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.25 Total: 16.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.30 -5.84 -36.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457208381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.663 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds