Wall clock time and date at job start Mon Mar 30 2020 04:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00099 * 2 1 4 4 C 1.53000 * 109.46934 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47499 * 65.00113 * 4 3 2 6 6 C 1.37095 * 119.99829 * 270.00236 * 5 4 3 7 7 H 1.08000 * 120.00154 * 140.61883 * 6 5 4 8 8 C 1.38947 * 119.99897 * 320.60779 * 6 5 4 9 9 N 1.31422 * 119.99667 * 159.11185 * 8 6 5 10 10 Si 1.86800 * 120.00321 * 339.12118 * 8 6 5 11 11 H 1.48502 * 109.47115 * 95.80850 * 10 8 6 12 12 H 1.48502 * 109.46962 * 215.80666 * 10 8 6 13 13 H 1.48490 * 109.46987 * 335.81012 * 10 8 6 14 14 C 1.34779 * 119.99838 * 89.99804 * 5 4 3 15 15 O 1.21292 * 120.00028 * 5.01648 * 14 5 4 16 16 C 1.50702 * 119.99666 * 185.00842 * 14 5 4 17 17 C 1.52998 * 109.46754 * 185.44878 * 16 14 5 18 18 O 1.42900 * 109.46904 * 178.65276 * 17 16 14 19 19 C 1.42901 * 114.00126 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47499 * 180.02562 * 19 18 17 21 21 C 1.53005 * 117.49679 * 243.62121 * 20 19 18 22 22 C 1.52994 * 117.50238 * 174.99843 * 20 19 18 23 23 H 1.09002 * 109.47359 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46623 * 299.99391 * 1 2 3 25 25 H 1.08998 * 109.47591 * 59.99564 * 1 2 3 26 26 H 1.08999 * 109.47111 * 60.00754 * 3 2 1 27 27 H 1.09001 * 109.47299 * 300.00486 * 3 2 1 28 28 H 1.08999 * 109.47114 * 304.99653 * 4 3 2 29 29 H 1.09009 * 109.46770 * 185.00641 * 4 3 2 30 30 H 0.96999 * 119.99693 * 180.02562 * 9 8 6 31 31 H 1.08999 * 109.46771 * 65.45704 * 16 14 5 32 32 H 1.08992 * 109.47375 * 305.45310 * 16 14 5 33 33 H 1.09006 * 109.46830 * 58.65705 * 17 16 14 34 34 H 1.08997 * 109.47755 * 298.65632 * 17 16 14 35 35 H 1.08996 * 109.47424 * 59.99538 * 19 18 17 36 36 H 1.09005 * 109.47101 * 300.00268 * 19 18 17 37 37 H 1.09001 * 115.55079 * 29.32136 * 20 19 18 38 38 H 1.08993 * 117.49697 * 359.97438 * 21 20 19 39 39 H 1.09002 * 117.49519 * 145.01877 * 21 20 19 40 40 H 1.08997 * 117.50056 * 214.97511 * 22 20 19 41 41 H 1.08998 * 117.50078 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0969 -0.7987 -1.3369 7 1 3.7942 -1.3131 -2.2370 8 6 4.6093 -1.5182 -0.2644 9 7 4.3592 -2.8039 -0.1562 10 14 5.6534 -0.6582 1.0238 11 1 4.7987 -0.2677 2.1737 12 1 6.7211 -1.5787 1.4907 13 1 6.2704 0.5555 0.4311 14 6 4.2616 1.3337 -2.3218 15 8 4.2426 2.5423 -2.2216 16 6 4.6050 0.6922 -3.6415 17 6 5.0164 1.7737 -4.6424 18 8 5.3721 1.1629 -5.8843 19 6 5.7749 2.0904 -6.8940 20 6 6.1301 1.3296 -8.1731 21 6 7.5777 1.4073 -8.6623 22 6 6.4750 2.1558 -9.4137 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 3.8514 0.5681 0.8410 29 1 3.9786 2.1765 0.0890 30 1 4.7166 -3.3061 0.5927 31 1 3.7353 0.1567 -4.0223 32 1 5.4297 -0.0066 -3.5021 33 1 5.8713 2.3250 -4.2506 34 1 4.1835 2.4589 -4.7999 35 1 6.6454 2.6480 -6.5488 36 1 4.9578 2.7825 -7.0984 37 1 5.5967 0.3914 -8.3255 38 1 8.2768 2.0007 -8.0731 39 1 7.9969 0.5199 -9.1366 40 1 6.1689 1.7609 -10.3824 41 1 6.4493 3.2413 -9.3187 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457208381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:34 Heat of formation + Delta-G solvation = -112.104246 kcal Electronic energy + Delta-G solvation = -21201.905994 eV Core-core repulsion = 17889.885058 eV Total energy + Delta-G solvation = -3312.020936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88186 -39.37815 -38.62220 -37.47751 -36.67125 -33.95058 -32.85679 -30.80719 -27.95402 -27.24574 -26.68863 -24.90726 -23.33623 -23.20953 -21.61420 -20.78959 -18.83827 -18.37802 -17.72284 -17.40701 -17.20888 -16.93563 -16.37221 -16.29788 -15.97733 -15.60553 -15.51517 -15.07242 -14.62885 -14.22128 -14.18800 -13.93219 -13.53305 -13.19911 -13.08595 -12.63157 -12.51736 -12.46673 -12.32530 -12.29785 -12.00432 -11.88843 -11.71687 -11.33774 -11.14674 -11.07400 -10.61268 -10.45090 -10.41737 -9.71164 -8.42867 -6.04112 1.20964 1.32445 1.43109 1.82800 2.21238 2.26663 2.77121 2.91875 3.00013 3.21215 3.88262 3.97184 4.03894 4.07270 4.10693 4.15027 4.18036 4.33778 4.35542 4.38421 4.50028 4.55250 4.57454 4.58444 4.68610 4.71343 4.77312 4.78503 4.85396 4.93049 5.00989 5.02629 5.24900 5.26263 5.47184 6.11650 6.25075 6.26535 6.40732 7.00667 7.41495 7.74822 8.71778 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.020358 B = 0.004276 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.026916 B = 6546.765768 C = 7114.352884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.060 3.940 4 C 0.090 3.910 5 N -0.463 5.463 6 C -0.326 4.326 7 H 0.078 0.922 8 C 0.037 3.963 9 N -0.895 5.895 10 Si 0.922 3.078 11 H -0.261 1.261 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.481 3.519 15 O -0.618 6.618 16 C -0.111 4.111 17 C 0.094 3.906 18 O -0.405 6.405 19 C 0.088 3.912 20 C -0.174 4.174 21 C -0.179 4.179 22 C -0.157 4.157 23 H 0.085 0.915 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.276 0.724 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 8.902 -8.815 12.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.018 4.018 4 C -0.032 4.032 5 N -0.184 5.184 6 C -0.453 4.453 7 H 0.095 0.905 8 C -0.167 4.167 9 N -0.531 5.531 10 Si 0.748 3.252 11 H -0.187 1.187 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.271 3.729 15 O -0.505 6.505 16 C -0.151 4.151 17 C 0.017 3.983 18 O -0.324 6.324 19 C 0.012 3.988 20 C -0.193 4.193 21 C -0.216 4.216 22 C -0.194 4.194 23 H 0.104 0.896 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.116 8.925 -8.670 12.444 hybrid contribution 0.134 0.179 0.890 0.918 sum 0.250 9.104 -7.780 11.978 Atomic orbital electron populations 1.22858 0.80557 1.03082 1.00424 1.88170 1.20544 1.27516 1.95335 1.22815 0.93151 0.85136 1.00652 1.21882 0.94297 0.98971 0.88067 1.43704 1.57988 1.06489 1.10178 1.18729 1.42736 0.79810 1.04037 0.90463 1.25742 0.96555 0.95469 0.98930 1.69841 1.42195 1.09258 1.31854 0.86209 0.79533 0.79131 0.80312 1.18704 1.21162 1.19052 1.20612 0.78781 0.86289 0.87168 1.90509 1.58736 1.15005 1.86242 1.21106 1.03784 0.98892 0.91327 1.21974 0.99168 0.94061 0.83098 1.87806 1.87349 1.35193 1.22101 1.22157 0.98889 0.91110 0.86642 1.22134 1.00561 1.02290 0.94286 1.23163 0.91115 1.03428 1.03879 1.23072 1.01813 0.99278 0.95202 0.89622 0.92573 0.93956 0.90384 0.93831 0.91698 0.88775 0.91394 0.89212 0.89001 0.93172 0.92752 0.92695 0.92232 0.87834 0.88438 0.87917 0.87083 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -16.75 10.18 -148.98 -1.52 -18.26 16 3 C 0.06 2.29 6.28 71.98 0.45 2.74 16 4 C 0.09 3.94 4.67 86.38 0.40 4.35 16 5 N -0.46 -22.44 2.12 -635.53 -1.35 -23.79 16 6 C -0.33 -17.37 8.43 84.04 0.71 -16.67 16 7 H 0.08 4.44 7.45 -2.91 -0.02 4.42 16 8 C 0.04 2.01 5.32 84.92 0.45 2.46 16 9 N -0.89 -50.92 13.96 21.66 0.30 -50.62 16 10 Si 0.92 42.54 25.01 68.60 1.72 44.25 16 11 H -0.26 -11.37 6.72 99.48 0.67 -10.71 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 C 0.48 22.23 7.62 87.66 0.67 22.89 16 15 O -0.62 -29.52 15.55 -3.07 -0.05 -29.57 16 16 C -0.11 -4.54 4.72 29.85 0.14 -4.40 16 17 C 0.09 3.32 5.23 71.98 0.38 3.70 16 18 O -0.40 -13.52 10.34 -148.98 -1.54 -15.06 16 19 C 0.09 2.25 6.22 71.98 0.45 2.70 16 20 C -0.17 -3.83 6.06 -10.79 -0.07 -3.89 16 21 C -0.18 -3.22 10.18 30.60 0.31 -2.91 16 22 C -0.16 -2.46 10.25 30.59 0.31 -2.15 16 23 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 2.93 3.42 -2.39 -0.01 2.92 16 29 H 0.09 3.86 7.36 -2.38 -0.02 3.85 16 30 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.09 3.64 8.04 -2.39 -0.02 3.62 16 32 H 0.09 3.88 7.86 -2.39 -0.02 3.86 16 33 H 0.05 1.77 8.12 -2.38 -0.02 1.75 16 34 H 0.05 1.87 8.08 -2.39 -0.02 1.86 16 35 H 0.05 1.30 7.88 -2.39 -0.02 1.29 16 36 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.10 1.69 8.03 -2.39 -0.02 1.67 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -64.11 340.04 3.98 -60.13 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: 0.96 Total: 22.02 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 5.46 Total: 10.90 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -1.05 Total: -74.41 kcal Atomic # 8 Polarization: -59.79 SS G_CDS: -3.10 Total: -62.90 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.72 Total: 44.25 kcal Total: -64.11 3.98 -60.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457208381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.975 kcal (2) G-P(sol) polarization free energy of solvation -64.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds