Wall clock time and date at job start Mon Mar 30 2020 04:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99646 * 2 1 4 4 C 1.53000 * 110.43462 * 57.80997 * 3 2 1 5 5 N 1.46497 * 109.47275 * 60.23680 * 4 3 2 6 6 C 1.34779 * 119.99970 * 175.02070 * 5 4 3 7 7 O 1.21283 * 119.99783 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00065 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.46986 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46942 * 180.02562 * 9 8 6 11 11 C 1.50695 * 109.46853 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00324 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99781 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00200 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00189 * 179.72701 * 13 11 10 16 16 H 1.48501 * 109.47032 * 270.27710 * 15 13 11 17 17 H 1.48497 * 109.47065 * 30.27298 * 15 13 11 18 18 H 1.48500 * 109.47341 * 150.27545 * 15 13 11 19 19 C 1.54810 * 110.48664 * 180.35116 * 3 2 1 20 20 C 1.55223 * 101.98968 * 98.00512 * 19 3 2 21 21 O 1.44382 * 103.56202 * 36.88209 * 20 19 3 22 22 C 1.43746 * 106.97541 * 320.00965 * 21 20 19 23 23 H 1.09009 * 109.47061 * 174.12672 * 1 2 3 24 24 H 1.08997 * 109.47496 * 294.12710 * 1 2 3 25 25 H 1.08997 * 109.47011 * 54.12930 * 1 2 3 26 26 H 1.09007 * 109.47099 * 300.23632 * 4 3 2 27 27 H 1.08998 * 109.47175 * 180.24092 * 4 3 2 28 28 H 0.96998 * 120.00115 * 355.02590 * 5 4 3 29 29 H 1.09002 * 109.46531 * 60.00749 * 8 6 5 30 30 H 1.08995 * 109.46973 * 300.00269 * 8 6 5 31 31 H 1.08995 * 109.47076 * 60.00531 * 9 8 6 32 32 H 1.09003 * 109.46788 * 300.00054 * 9 8 6 33 33 H 1.09002 * 109.47148 * 59.99899 * 10 9 8 34 34 H 1.08995 * 109.46822 * 300.00041 * 10 9 8 35 35 H 0.97003 * 119.99331 * 359.72124 * 14 13 11 36 36 H 1.09002 * 110.91011 * 216.13318 * 19 3 2 37 37 H 1.09007 * 110.90923 * 339.72871 * 19 3 2 38 38 H 1.09006 * 110.51940 * 278.38716 * 20 19 3 39 39 H 1.09002 * 110.77961 * 155.50127 * 20 19 3 40 40 H 1.08995 * 109.87898 * 267.08946 * 22 21 20 41 41 H 1.08999 * 109.87344 * 145.93641 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5296 2.1042 1.2133 5 7 1.9254 1.4113 2.4419 6 6 1.6964 1.9822 3.6412 7 8 1.1622 3.0693 3.7032 8 6 2.1030 1.2692 4.9051 9 6 1.7323 2.1272 6.1165 10 6 2.1457 1.4037 7.3996 11 6 1.7811 2.2490 8.5927 12 1 1.3020 3.2063 8.4500 13 6 2.0581 1.7997 9.8664 14 7 2.6411 0.6337 10.0402 15 14 1.6131 2.8509 11.3450 16 1 2.7502 3.7472 11.6754 17 1 0.4144 3.6683 11.0285 18 1 1.3211 1.9731 12.5066 19 6 3.5553 1.2108 -0.0089 20 6 3.8817 1.4058 -1.5138 21 8 2.9092 2.3809 -1.9476 22 6 1.6668 2.0488 -1.3054 23 1 -0.3634 -1.0224 -0.1052 24 1 -0.3634 0.4200 0.9378 25 1 -0.3633 0.6022 -0.8327 26 1 0.4439 2.1955 1.1814 27 1 1.9784 3.0973 1.1955 28 1 2.3524 0.5418 2.3924 29 1 3.1796 1.0990 4.8958 30 1 1.5843 0.3125 4.9655 31 1 0.6557 2.2971 6.1255 32 1 2.2507 3.0842 6.0562 33 1 3.2224 1.2341 7.3903 34 1 1.6276 0.4466 7.4600 35 1 2.8724 0.0880 9.2723 36 1 3.9973 2.0063 0.5910 37 1 3.8871 0.2327 0.3396 38 1 3.7547 0.4692 -2.0569 39 1 4.8938 1.7892 -1.6435 40 1 1.0749 1.4037 -1.9546 41 1 1.1120 2.9592 -1.0786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594005864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:28 Heat of formation + Delta-G solvation = -147.932411 kcal Electronic energy + Delta-G solvation = -21010.177602 eV Core-core repulsion = 17696.603040 eV Total energy + Delta-G solvation = -3313.574562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83726 -39.29497 -37.53343 -34.82409 -34.36979 -32.22351 -31.74329 -29.96291 -27.91727 -27.17445 -25.76568 -23.33709 -23.10727 -20.93205 -20.78887 -19.87218 -17.79234 -17.35885 -16.77171 -16.34268 -15.98159 -15.69959 -15.43298 -15.19958 -14.99247 -14.71553 -13.89354 -13.69733 -13.48111 -13.33342 -12.98656 -12.80899 -12.48940 -12.17865 -12.07404 -11.65429 -11.48128 -11.44938 -11.11146 -10.90337 -10.70005 -10.27484 -10.09020 -10.07831 -9.84642 -9.81929 -9.52507 -9.14063 -8.49448 -8.28203 -6.32462 -4.00497 2.82603 2.92596 3.30530 3.47273 3.51032 3.51308 3.67110 3.93128 4.08963 4.34252 4.58726 4.65102 4.76199 4.87634 4.96539 5.01123 5.08868 5.13928 5.24659 5.27484 5.31237 5.41063 5.44781 5.48634 5.53703 5.61216 5.61537 6.13442 6.28625 6.34020 6.58820 6.66378 6.76198 6.99538 7.45468 7.51886 7.57188 8.27932 8.35483 8.52663 8.93717 9.71257 11.08481 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.040527 B = 0.002890 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.731373 B = 9686.737951 C = 9732.458214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.368 6.368 3 C 0.071 3.929 4 C 0.102 3.898 5 N -0.733 5.733 6 C 0.513 3.487 7 O -0.537 6.537 8 C -0.139 4.139 9 C -0.088 4.088 10 C 0.007 3.993 11 C -0.599 4.599 12 H 0.050 0.950 13 C 0.013 3.987 14 N -0.916 5.916 15 Si 1.071 2.929 16 H -0.288 1.288 17 H -0.288 1.288 18 H -0.285 1.285 19 C -0.142 4.142 20 C 0.047 3.953 21 O -0.371 6.371 22 C 0.029 3.971 23 H 0.091 0.909 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.403 0.597 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.268 0.732 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -2.411 -25.436 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.287 6.287 3 C 0.031 3.969 4 C -0.022 4.022 5 N -0.388 5.388 6 C 0.301 3.699 7 O -0.413 6.413 8 C -0.179 4.179 9 C -0.126 4.126 10 C -0.030 4.030 11 C -0.638 4.638 12 H 0.068 0.932 13 C -0.190 4.190 14 N -0.553 5.553 15 Si 0.900 3.100 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.210 1.210 19 C -0.180 4.180 20 C -0.029 4.029 21 O -0.290 6.290 22 C -0.049 4.049 23 H 0.109 0.891 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.238 0.762 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.450 -1.541 -23.877 23.931 hybrid contribution -0.173 -0.513 -1.667 1.752 sum -0.623 -2.054 -25.544 25.634 Atomic orbital electron populations 1.22876 0.80633 1.03239 1.00757 1.87997 1.20237 1.25645 1.94822 1.23156 0.94997 0.84415 0.94350 1.21803 1.00583 0.96465 0.83364 1.45988 1.64221 1.23440 1.05129 1.21237 0.77687 0.86017 0.84958 1.90686 1.42170 1.21185 1.87287 1.21850 1.02769 1.00718 0.92532 1.21308 1.01104 0.97923 0.92238 1.19262 0.95677 0.95739 0.92322 1.22105 1.43238 1.05980 0.92453 0.93193 1.25864 0.94517 0.97783 1.00865 1.70764 1.38923 1.11071 1.34532 0.83510 0.76220 0.75015 0.75259 1.21462 1.21459 1.21032 1.23224 0.91760 1.04799 0.98210 1.23645 0.93668 0.92837 0.92758 1.88913 1.19560 1.51552 1.68953 1.23735 0.88191 1.00512 0.92423 0.89085 0.93148 0.93620 0.91249 0.89968 0.76201 0.89376 0.89400 0.92558 0.92528 0.97510 0.97522 0.92183 0.88600 0.88489 0.91614 0.88368 0.90984 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.17 101.05 1.03 1.18 16 2 O -0.37 -3.22 10.08 -35.23 -0.36 -3.57 16 3 C 0.07 0.60 0.65 -89.09 -0.06 0.54 16 4 C 0.10 1.06 3.87 -4.04 -0.02 1.04 16 5 N -0.73 -8.50 5.24 -60.29 -0.32 -8.81 16 6 C 0.51 8.15 7.83 -10.98 -0.09 8.06 16 7 O -0.54 -10.70 15.98 5.56 0.09 -10.61 16 8 C -0.14 -2.29 5.70 -27.88 -0.16 -2.45 16 9 C -0.09 -1.92 4.44 -26.73 -0.12 -2.04 16 10 C 0.01 0.18 4.28 -27.88 -0.12 0.06 16 11 C -0.60 -17.71 9.11 -34.44 -0.31 -18.02 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 14 N -0.92 -28.49 13.65 55.43 0.76 -27.74 16 15 Si 1.07 26.03 29.90 -169.99 -5.08 20.95 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.14 -1.07 6.02 -24.60 -0.15 -1.21 16 20 C 0.05 0.35 7.72 38.34 0.30 0.64 16 21 O -0.37 -3.61 11.52 -35.23 -0.41 -4.01 16 22 C 0.03 0.24 6.51 37.73 0.25 0.48 16 23 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 24 H 0.05 0.41 6.79 -51.93 -0.35 0.05 16 25 H 0.05 0.27 6.62 -51.93 -0.34 -0.07 16 26 H 0.07 0.74 6.73 -51.93 -0.35 0.39 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.40 3.88 8.11 -40.82 -0.33 3.55 16 29 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 32 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 33 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 34 H 0.01 0.17 8.00 -51.93 -0.42 -0.24 16 35 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16 36 H 0.10 0.75 7.87 -51.93 -0.41 0.34 16 37 H 0.10 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.53 6.88 -51.93 -0.36 0.18 16 41 H 0.09 0.70 7.69 -51.93 -0.40 0.30 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -34.95 334.26 -6.49 -41.44 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.67 Total: -1.25 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 0.45 Total: -11.43 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.44 Total: -36.55 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.67 Total: -18.20 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.95 -6.49 -41.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594005864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.489 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds