Wall clock time and date at job start Mon Mar 30 2020 04:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99646 * 2 1 4 4 C 1.53000 * 110.43462 * 57.80997 * 3 2 1 5 5 N 1.46497 * 109.47275 * 60.23680 * 4 3 2 6 6 C 1.34779 * 119.99970 * 175.02070 * 5 4 3 7 7 O 1.21283 * 119.99783 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00065 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.46986 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46942 * 180.02562 * 9 8 6 11 11 C 1.50695 * 109.46853 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00324 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99781 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00200 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00189 * 179.72701 * 13 11 10 16 16 H 1.48501 * 109.47032 * 270.27710 * 15 13 11 17 17 H 1.48497 * 109.47065 * 30.27298 * 15 13 11 18 18 H 1.48500 * 109.47341 * 150.27545 * 15 13 11 19 19 C 1.54810 * 110.48664 * 180.35116 * 3 2 1 20 20 C 1.55223 * 101.98968 * 98.00512 * 19 3 2 21 21 O 1.44382 * 103.56202 * 36.88209 * 20 19 3 22 22 C 1.43746 * 106.97541 * 320.00965 * 21 20 19 23 23 H 1.09009 * 109.47061 * 174.12672 * 1 2 3 24 24 H 1.08997 * 109.47496 * 294.12710 * 1 2 3 25 25 H 1.08997 * 109.47011 * 54.12930 * 1 2 3 26 26 H 1.09007 * 109.47099 * 300.23632 * 4 3 2 27 27 H 1.08998 * 109.47175 * 180.24092 * 4 3 2 28 28 H 0.96998 * 120.00115 * 355.02590 * 5 4 3 29 29 H 1.09002 * 109.46531 * 60.00749 * 8 6 5 30 30 H 1.08995 * 109.46973 * 300.00269 * 8 6 5 31 31 H 1.08995 * 109.47076 * 60.00531 * 9 8 6 32 32 H 1.09003 * 109.46788 * 300.00054 * 9 8 6 33 33 H 1.09002 * 109.47148 * 59.99899 * 10 9 8 34 34 H 1.08995 * 109.46822 * 300.00041 * 10 9 8 35 35 H 0.97003 * 119.99331 * 359.72124 * 14 13 11 36 36 H 1.09002 * 110.91011 * 216.13318 * 19 3 2 37 37 H 1.09007 * 110.90923 * 339.72871 * 19 3 2 38 38 H 1.09006 * 110.51940 * 278.38716 * 20 19 3 39 39 H 1.09002 * 110.77961 * 155.50127 * 20 19 3 40 40 H 1.08995 * 109.87898 * 267.08946 * 22 21 20 41 41 H 1.08999 * 109.87344 * 145.93641 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5296 2.1042 1.2133 5 7 1.9254 1.4113 2.4419 6 6 1.6964 1.9822 3.6412 7 8 1.1622 3.0693 3.7032 8 6 2.1030 1.2692 4.9051 9 6 1.7323 2.1272 6.1165 10 6 2.1457 1.4037 7.3996 11 6 1.7811 2.2490 8.5927 12 1 1.3020 3.2063 8.4500 13 6 2.0581 1.7997 9.8664 14 7 2.6411 0.6337 10.0402 15 14 1.6131 2.8509 11.3450 16 1 2.7502 3.7472 11.6754 17 1 0.4144 3.6683 11.0285 18 1 1.3211 1.9731 12.5066 19 6 3.5553 1.2108 -0.0089 20 6 3.8817 1.4058 -1.5138 21 8 2.9092 2.3809 -1.9476 22 6 1.6668 2.0488 -1.3054 23 1 -0.3634 -1.0224 -0.1052 24 1 -0.3634 0.4200 0.9378 25 1 -0.3633 0.6022 -0.8327 26 1 0.4439 2.1955 1.1814 27 1 1.9784 3.0973 1.1955 28 1 2.3524 0.5418 2.3924 29 1 3.1796 1.0990 4.8958 30 1 1.5843 0.3125 4.9655 31 1 0.6557 2.2971 6.1255 32 1 2.2507 3.0842 6.0562 33 1 3.2224 1.2341 7.3903 34 1 1.6276 0.4466 7.4600 35 1 2.8724 0.0880 9.2723 36 1 3.9973 2.0063 0.5910 37 1 3.8871 0.2327 0.3396 38 1 3.7547 0.4692 -2.0569 39 1 4.8938 1.7892 -1.6435 40 1 1.0749 1.4037 -1.9546 41 1 1.1120 2.9592 -1.0786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594005864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:28 Heat of formation + Delta-G solvation = -173.808856 kcal Electronic energy + Delta-G solvation = -21011.299688 eV Core-core repulsion = 17696.603040 eV Total energy + Delta-G solvation = -3314.696649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60654 -40.47202 -38.21061 -36.52645 -35.70617 -34.09341 -32.60004 -30.72272 -29.48965 -27.80937 -26.92720 -25.25519 -23.70299 -22.64907 -21.58909 -21.15814 -19.08681 -18.47493 -18.04614 -17.48346 -16.96207 -16.70063 -16.29197 -16.00731 -15.84729 -15.65242 -15.44786 -15.15169 -15.08728 -14.71141 -14.19980 -13.70329 -13.54066 -13.23436 -13.10498 -12.80348 -12.71980 -12.59685 -12.53215 -12.20534 -11.98357 -11.80156 -11.75605 -11.68831 -11.11572 -10.90422 -10.71538 -10.54550 -10.53846 -10.22362 -8.69684 -6.39293 1.51665 1.55628 1.60752 1.79488 1.99242 2.54731 2.57066 2.90960 3.14849 3.24306 3.39556 3.67727 3.84581 4.02476 4.09845 4.13810 4.19502 4.33020 4.37205 4.41744 4.45014 4.54589 4.63599 4.69259 4.78802 4.80250 4.82386 4.85302 4.91251 4.96203 4.96713 5.27615 5.45759 5.51169 5.70835 6.01906 6.02908 6.18810 6.44104 6.60099 7.16568 7.40807 8.72203 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.040527 B = 0.002890 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.731373 B = 9686.737951 C = 9732.458214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.375 6.375 3 C 0.079 3.921 4 C 0.102 3.898 5 N -0.711 5.711 6 C 0.517 3.483 7 O -0.583 6.583 8 C -0.130 4.130 9 C -0.076 4.076 10 C 0.009 3.991 11 C -0.625 4.625 12 H 0.042 0.958 13 C -0.037 4.037 14 N -0.936 5.936 15 Si 1.118 2.882 16 H -0.271 1.271 17 H -0.274 1.274 18 H -0.278 1.278 19 C -0.142 4.142 20 C 0.045 3.955 21 O -0.393 6.393 22 C 0.028 3.972 23 H 0.104 0.896 24 H 0.039 0.961 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.416 0.584 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.039 0.961 32 H 0.040 0.960 33 H -0.001 1.001 34 H -0.002 1.002 35 H 0.258 0.742 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 -2.839 -26.361 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.294 6.294 3 C 0.038 3.962 4 C -0.022 4.022 5 N -0.364 5.364 6 C 0.306 3.694 7 O -0.463 6.463 8 C -0.170 4.170 9 C -0.114 4.114 10 C -0.028 4.028 11 C -0.663 4.663 12 H 0.060 0.940 13 C -0.234 4.234 14 N -0.573 5.573 15 Si 0.939 3.061 16 H -0.197 1.197 17 H -0.199 1.199 18 H -0.203 1.203 19 C -0.179 4.179 20 C -0.030 4.030 21 O -0.312 6.312 22 C -0.049 4.049 23 H 0.122 0.878 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.254 0.746 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.270 -2.013 -24.858 24.941 hybrid contribution -0.224 -0.420 -1.451 1.527 sum -0.495 -2.433 -26.310 26.426 Atomic orbital electron populations 1.23000 0.79897 1.04339 1.00721 1.87995 1.21072 1.25531 1.94789 1.23060 0.95574 0.84174 0.93371 1.21894 1.00560 0.96382 0.83376 1.45739 1.62716 1.23590 1.04384 1.21002 0.77296 0.85303 0.85845 1.90677 1.44570 1.23137 1.87929 1.21677 1.04397 1.00293 0.90627 1.21039 0.99710 0.97736 0.92953 1.19192 0.94912 0.95235 0.93429 1.22548 1.43312 1.06225 0.94182 0.93999 1.27397 0.93645 0.98166 1.04234 1.70890 1.40347 1.11946 1.34157 0.82919 0.77069 0.73976 0.72090 1.19678 1.19914 1.20347 1.23248 0.90939 1.05262 0.98496 1.23788 0.93912 0.92870 0.92475 1.88892 1.20377 1.52535 1.69381 1.23780 0.87994 1.00872 0.92268 0.87765 0.94249 0.92338 0.91369 0.90836 0.74642 0.87209 0.87390 0.94177 0.94097 0.98285 0.98342 0.93223 0.88973 0.87420 0.90847 0.87029 0.90046 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.17 113.37 1.15 1.35 16 2 O -0.37 -5.72 10.08 -148.98 -1.50 -7.22 16 3 C 0.08 1.18 0.65 -9.81 -0.01 1.17 16 4 C 0.10 1.99 3.87 86.38 0.33 2.33 16 5 N -0.71 -15.33 5.24 -463.05 -2.43 -17.76 16 6 C 0.52 15.96 7.83 87.66 0.69 16.64 16 7 O -0.58 -23.30 15.98 -3.04 -0.05 -23.35 16 8 C -0.13 -4.13 5.70 29.85 0.17 -3.96 16 9 C -0.08 -3.37 4.44 30.60 0.14 -3.23 16 10 C 0.01 0.49 4.28 29.85 0.13 0.62 16 11 C -0.62 -37.33 9.11 25.60 0.23 -37.10 16 12 H 0.04 2.51 7.74 -2.91 -0.02 2.48 16 13 C -0.04 -2.19 5.46 84.65 0.46 -1.73 16 14 N -0.94 -58.44 13.65 21.45 0.29 -58.14 16 15 Si 1.12 51.81 29.90 68.60 2.05 53.86 16 16 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 C -0.14 -1.84 6.02 31.97 0.19 -1.65 16 20 C 0.05 0.58 7.72 72.74 0.56 1.14 16 21 O -0.39 -7.05 11.52 -148.98 -1.72 -8.76 16 22 C 0.03 0.42 6.51 72.35 0.47 0.89 16 23 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.04 0.58 6.79 -2.39 -0.02 0.56 16 25 H 0.06 0.57 6.62 -2.39 -0.02 0.56 16 26 H 0.07 1.39 6.73 -2.38 -0.02 1.37 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 28 H 0.42 6.98 8.11 -92.71 -0.75 6.23 16 29 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 32 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 33 H 0.00 -0.06 8.01 -2.39 -0.02 -0.08 16 34 H 0.00 -0.09 8.00 -2.39 -0.02 -0.11 16 35 H 0.26 16.09 7.22 -92.71 -0.67 15.42 16 36 H 0.09 1.28 7.87 -2.39 -0.02 1.26 16 37 H 0.11 1.17 8.08 -2.38 -0.02 1.15 16 38 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.05 6.88 -2.39 -0.02 1.03 16 41 H 0.10 1.33 7.69 -2.39 -0.02 1.31 16 Total: -1.00 -75.23 334.26 1.53 -73.70 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.36 Total: 11.21 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 4.52 Total: -23.53 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -2.13 Total: -75.90 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -3.27 Total: -39.34 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 2.05 Total: 53.86 kcal Total: -75.23 1.53 -73.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594005864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.110 kcal (2) G-P(sol) polarization free energy of solvation -75.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds