Wall clock time and date at job start Mon Mar 30 2020 04:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99486 * 2 1 4 4 C 1.53006 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.51019 * 55.09440 * 4 3 2 6 6 C 1.53704 * 109.44765 * 175.38487 * 4 3 2 7 7 N 1.47145 * 108.16392 * 172.37348 * 6 4 3 8 8 C 1.34777 * 120.98491 * 129.43467 * 7 6 4 9 9 O 1.21278 * 119.99854 * 359.71221 * 8 7 6 10 10 C 1.50703 * 120.00161 * 179.71914 * 8 7 6 11 11 C 1.53000 * 109.46912 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47060 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46756 * 59.99920 * 17 15 13 19 19 H 1.48490 * 109.47381 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47117 * 300.00527 * 17 15 13 21 21 C 1.47157 * 118.03601 * 309.15732 * 7 6 4 22 22 C 1.53298 * 108.38088 * 50.78608 * 21 7 6 23 23 O 1.42958 * 109.22448 * 307.69997 * 22 21 7 24 24 H 1.09004 * 109.47073 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47921 * 299.99864 * 1 2 3 26 26 H 1.09002 * 109.47615 * 60.00808 * 1 2 3 27 27 H 1.09000 * 109.47600 * 59.99831 * 3 2 1 28 28 H 1.09007 * 109.46920 * 299.99436 * 3 2 1 29 29 H 1.09003 * 109.83620 * 52.69213 * 6 4 3 30 30 H 1.09000 * 109.74522 * 292.00052 * 6 4 3 31 31 H 1.09001 * 109.46980 * 59.99654 * 10 8 7 32 32 H 1.08992 * 109.47158 * 299.99760 * 10 8 7 33 33 H 1.09002 * 109.47398 * 300.00078 * 11 10 8 34 34 H 1.09001 * 109.47194 * 60.00258 * 11 10 8 35 35 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 36 36 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 37 37 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.68071 * 170.50684 * 21 7 6 39 39 H 1.08996 * 109.68152 * 291.02762 * 21 7 6 40 40 H 1.09001 * 109.51321 * 67.62181 * 22 21 7 41 41 H 1.08998 * 109.50869 * 187.72336 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 0.0006 5 1 3.8523 0.5700 -0.8417 6 6 4.1595 2.5847 -0.1160 7 7 5.6132 2.4559 0.0719 8 6 6.4774 3.0006 -0.8072 9 8 6.0602 3.6033 -1.7734 10 6 7.9621 2.8605 -0.5898 11 6 8.7120 3.5632 -1.7233 12 6 10.2193 3.4216 -1.5022 13 6 10.9580 4.1141 -2.6183 14 1 10.4075 4.6065 -3.4063 15 6 12.3367 4.1202 -2.6329 16 7 13.0070 3.5211 -1.6730 17 14 13.2524 4.9781 -4.0167 18 1 12.8871 6.4174 -4.0343 19 1 14.7152 4.8418 -3.8014 20 1 12.8825 4.3578 -5.3142 21 6 6.0956 1.7201 1.2515 22 6 5.3772 0.3669 1.3043 23 8 3.9659 0.5797 1.2222 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3635 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.6884 1.8465 0.8899 28 1 1.6884 1.8464 -0.8901 29 1 3.7466 3.2389 0.6519 30 1 3.9521 2.9993 -1.1025 31 1 8.2294 1.8039 -0.5779 32 1 8.2342 3.3149 0.3628 33 1 8.4398 3.1084 -2.6758 34 1 8.4447 4.6198 -1.7356 35 1 10.4911 3.8766 -0.5498 36 1 10.4870 2.3651 -1.4896 37 1 13.9770 3.5257 -1.6831 38 1 7.1711 1.5618 1.1708 39 1 5.8750 2.2890 2.1546 40 1 5.7016 -0.2505 0.4666 41 1 5.6164 -0.1359 2.2413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594298411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:04 Heat of formation + Delta-G solvation = -136.657130 kcal Electronic energy + Delta-G solvation = -20892.124168 eV Core-core repulsion = 17579.038539 eV Total energy + Delta-G solvation = -3313.085629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43653 -38.71632 -37.70604 -34.78028 -34.28531 -32.75478 -31.91793 -28.83617 -28.40325 -26.97647 -25.47787 -23.69214 -23.41123 -21.57354 -20.28967 -18.98624 -17.18198 -17.16770 -16.83460 -16.27106 -16.00967 -15.62851 -15.49451 -15.41218 -14.91963 -14.45418 -14.27087 -14.07140 -13.40076 -12.94512 -12.75857 -12.55733 -12.26475 -11.97515 -11.91707 -11.73286 -11.38765 -11.36352 -10.91980 -10.79378 -10.60620 -10.55593 -10.33300 -10.02602 -9.70645 -9.68769 -9.28694 -9.04549 -8.65695 -8.32202 -5.98102 -3.99583 2.74512 2.81776 3.32374 3.36395 3.39828 3.43621 3.49129 4.48036 4.51450 4.58531 4.64012 4.75709 4.84856 4.92193 4.98846 5.05270 5.09644 5.13363 5.18841 5.33651 5.37900 5.38293 5.48564 5.54710 5.63830 5.66488 5.70565 6.17738 6.31768 6.69853 6.76617 6.88876 6.90574 7.13669 7.33528 7.69503 7.82235 8.02235 8.30123 8.46188 9.07123 9.64328 11.13364 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.044178 B = 0.002929 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.644348 B = 9558.684755 C = 9922.337993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.071 3.929 4 C 0.080 3.920 5 H 0.073 0.927 6 C 0.086 3.914 7 N -0.625 5.625 8 C 0.518 3.482 9 O -0.534 6.534 10 C -0.137 4.137 11 C -0.095 4.095 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.071 3.929 22 C 0.047 3.953 23 O -0.370 6.370 24 H 0.086 0.914 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.232 -7.005 8.487 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.006 4.006 4 C 0.021 3.979 5 H 0.091 0.909 6 C -0.037 4.037 7 N -0.362 5.362 8 C 0.308 3.692 9 O -0.410 6.410 10 C -0.176 4.176 11 C -0.133 4.133 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.052 4.052 22 C -0.030 4.030 23 O -0.288 6.288 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.270 -6.919 8.151 24.704 hybrid contribution 0.571 0.700 -0.754 1.177 sum -21.699 -6.219 7.397 23.754 Atomic orbital electron populations 1.22757 0.80903 1.02894 0.99983 1.87939 1.19682 1.27152 1.95411 1.22455 0.91288 0.85556 1.01286 1.22527 0.93022 0.93777 0.88555 0.90929 1.22141 0.81072 0.96217 1.04304 1.48249 1.05727 1.56318 1.25861 1.21349 0.89535 0.77109 0.81188 1.90668 1.79717 1.41279 1.29320 1.21879 0.89153 1.03396 1.03215 1.21467 0.97468 0.99223 0.95171 1.19122 0.88247 0.97109 0.97118 1.21227 0.91259 1.34277 1.08942 0.92639 1.25020 0.97798 0.95629 0.96057 1.69953 1.07157 1.43916 1.32711 0.86643 0.78494 0.80186 0.82610 1.20234 1.21323 1.20225 1.22486 1.00838 0.93317 0.88564 1.23007 0.81107 0.95618 1.03278 1.87993 1.22277 1.81217 1.37336 0.89530 0.93980 0.94037 0.92116 0.91389 0.90771 0.87924 0.89301 0.89235 0.92678 0.92667 0.96599 0.96602 0.93001 0.87907 0.90463 0.92354 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.04 10.67 -39.97 -0.43 -4.47 16 3 C 0.07 0.64 5.61 37.16 0.21 0.85 16 4 C 0.08 0.85 3.07 -26.36 -0.08 0.77 16 5 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 6 C 0.09 0.97 5.95 -3.32 -0.02 0.95 16 7 N -0.63 -8.04 3.01 -172.03 -0.52 -8.56 16 8 C 0.52 8.51 7.71 -10.98 -0.08 8.42 16 9 O -0.53 -10.70 15.45 5.56 0.09 -10.61 16 10 C -0.14 -2.26 4.07 -27.88 -0.11 -2.38 16 11 C -0.10 -2.06 4.44 -26.73 -0.12 -2.18 16 12 C 0.02 0.54 4.97 -27.89 -0.14 0.41 16 13 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 17 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 C 0.07 0.70 6.54 -3.53 -0.02 0.67 16 22 C 0.05 0.44 6.98 37.31 0.26 0.70 16 23 O -0.37 -4.21 10.35 -39.97 -0.41 -4.62 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.25 7.08 -51.93 -0.37 0.88 16 31 H 0.09 1.32 7.66 -51.93 -0.40 0.93 16 32 H 0.09 1.34 8.01 -51.93 -0.42 0.92 16 33 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.10 0.92 6.05 -51.93 -0.31 0.61 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -34.57 337.32 -6.83 -41.41 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -6.95 Total: -4.69 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 0.59 Total: -4.26 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.22 Total: -34.86 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.75 Total: -19.70 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.57 -6.83 -41.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594298411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.248 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds