Wall clock time and date at job start Mon Mar 30 2020 04:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99486 * 2 1 4 4 C 1.53006 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.51019 * 55.09440 * 4 3 2 6 6 C 1.53704 * 109.44765 * 175.38487 * 4 3 2 7 7 N 1.47145 * 108.16392 * 172.37348 * 6 4 3 8 8 C 1.34777 * 120.98491 * 129.43467 * 7 6 4 9 9 O 1.21278 * 119.99854 * 359.71221 * 8 7 6 10 10 C 1.50703 * 120.00161 * 179.71914 * 8 7 6 11 11 C 1.53000 * 109.46912 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47060 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99563 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00432 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46756 * 59.99920 * 17 15 13 19 19 H 1.48490 * 109.47381 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47117 * 300.00527 * 17 15 13 21 21 C 1.47157 * 118.03601 * 309.15732 * 7 6 4 22 22 C 1.53298 * 108.38088 * 50.78608 * 21 7 6 23 23 O 1.42958 * 109.22448 * 307.69997 * 22 21 7 24 24 H 1.09004 * 109.47073 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47921 * 299.99864 * 1 2 3 26 26 H 1.09002 * 109.47615 * 60.00808 * 1 2 3 27 27 H 1.09000 * 109.47600 * 59.99831 * 3 2 1 28 28 H 1.09007 * 109.46920 * 299.99436 * 3 2 1 29 29 H 1.09003 * 109.83620 * 52.69213 * 6 4 3 30 30 H 1.09000 * 109.74522 * 292.00052 * 6 4 3 31 31 H 1.09001 * 109.46980 * 59.99654 * 10 8 7 32 32 H 1.08992 * 109.47158 * 299.99760 * 10 8 7 33 33 H 1.09002 * 109.47398 * 300.00078 * 11 10 8 34 34 H 1.09001 * 109.47194 * 60.00258 * 11 10 8 35 35 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 36 36 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 37 37 H 0.97002 * 119.99731 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.68071 * 170.50684 * 21 7 6 39 39 H 1.08996 * 109.68152 * 291.02762 * 21 7 6 40 40 H 1.09001 * 109.51321 * 67.62181 * 22 21 7 41 41 H 1.08998 * 109.50869 * 187.72336 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 0.0006 5 1 3.8523 0.5700 -0.8417 6 6 4.1595 2.5847 -0.1160 7 7 5.6132 2.4559 0.0719 8 6 6.4774 3.0006 -0.8072 9 8 6.0602 3.6033 -1.7734 10 6 7.9621 2.8605 -0.5898 11 6 8.7120 3.5632 -1.7233 12 6 10.2193 3.4216 -1.5022 13 6 10.9580 4.1141 -2.6183 14 1 10.4075 4.6065 -3.4063 15 6 12.3367 4.1202 -2.6329 16 7 13.0070 3.5211 -1.6730 17 14 13.2524 4.9781 -4.0167 18 1 12.8871 6.4174 -4.0343 19 1 14.7152 4.8418 -3.8014 20 1 12.8825 4.3578 -5.3142 21 6 6.0956 1.7201 1.2515 22 6 5.3772 0.3669 1.3043 23 8 3.9659 0.5797 1.2222 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3635 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.6884 1.8465 0.8899 28 1 1.6884 1.8464 -0.8901 29 1 3.7466 3.2389 0.6519 30 1 3.9521 2.9993 -1.1025 31 1 8.2294 1.8039 -0.5779 32 1 8.2342 3.3149 0.3628 33 1 8.4398 3.1084 -2.6758 34 1 8.4447 4.6198 -1.7356 35 1 10.4911 3.8766 -0.5498 36 1 10.4870 2.3651 -1.4896 37 1 13.9770 3.5257 -1.6831 38 1 7.1711 1.5618 1.1708 39 1 5.8750 2.2890 2.1546 40 1 5.7016 -0.2505 0.4666 41 1 5.6164 -0.1359 2.2413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594298411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:04 Heat of formation + Delta-G solvation = -160.537861 kcal Electronic energy + Delta-G solvation = -20893.159714 eV Core-core repulsion = 17579.038539 eV Total energy + Delta-G solvation = -3314.121175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48489 -39.74094 -38.47172 -36.18208 -35.83153 -34.14970 -33.34223 -30.10863 -29.56295 -27.95461 -26.51507 -25.26006 -24.33293 -22.66605 -21.91207 -20.16516 -18.58032 -18.18199 -17.93182 -17.58673 -17.05646 -16.69058 -16.46389 -16.42117 -16.19271 -15.81856 -15.36682 -15.16868 -14.57184 -14.26681 -14.19012 -13.82921 -13.44871 -13.22287 -13.10386 -12.79948 -12.62129 -12.53699 -12.47836 -12.35792 -12.06452 -11.77120 -11.57563 -11.46450 -11.28554 -11.20831 -10.77367 -10.66907 -10.53963 -9.66665 -8.20253 -6.30080 1.39670 1.42351 1.50454 1.52048 1.76027 2.41544 2.60215 2.78212 3.12723 3.51773 3.71767 3.86585 3.97327 4.00388 4.14476 4.17468 4.24496 4.31671 4.35304 4.44955 4.50029 4.55841 4.59686 4.67967 4.75021 4.85330 4.87094 4.92248 4.94225 5.06991 5.17595 5.33965 5.53346 5.74777 5.86012 6.05730 6.18715 6.20921 6.29015 6.84885 7.06242 7.38389 8.90994 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.044178 B = 0.002929 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.644348 B = 9558.684755 C = 9922.337993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.072 3.928 4 C 0.085 3.915 5 H 0.056 0.944 6 C 0.086 3.914 7 N -0.619 5.619 8 C 0.518 3.482 9 O -0.580 6.580 10 C -0.128 4.128 11 C -0.082 4.082 12 C 0.027 3.973 13 C -0.549 4.549 14 H 0.050 0.950 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.961 3.039 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C 0.066 3.934 22 C 0.046 3.954 23 O -0.381 6.381 24 H 0.095 0.905 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.002 0.998 36 H 0.002 0.998 37 H 0.265 0.735 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.052 0.948 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.906 -7.141 9.247 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.005 4.005 4 C 0.026 3.974 5 H 0.074 0.926 6 C -0.037 4.037 7 N -0.353 5.353 8 C 0.309 3.691 9 O -0.459 6.459 10 C -0.167 4.167 11 C -0.120 4.120 12 C -0.010 4.010 13 C -0.587 4.587 14 H 0.069 0.931 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.785 3.215 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.056 4.056 22 C -0.031 4.031 23 O -0.300 6.300 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.020 0.980 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.971 -7.082 8.951 25.650 hybrid contribution 0.742 0.689 -0.929 1.374 sum -22.229 -6.392 8.022 24.482 Atomic orbital electron populations 1.22941 0.79170 1.03881 1.01045 1.87885 1.21677 1.27977 1.95650 1.22500 0.90035 0.85420 1.02552 1.22470 0.94255 0.92776 0.87937 0.92574 1.22240 0.80074 0.97062 1.04301 1.48257 1.06164 1.55144 1.25750 1.21175 0.89705 0.77062 0.81178 1.90651 1.80294 1.43642 1.31339 1.21709 0.89093 1.04078 1.01852 1.21172 0.95301 0.98915 0.96634 1.19004 0.90805 0.95590 0.95593 1.21658 0.92201 1.34962 1.09858 0.93122 1.25896 0.98683 0.96217 0.98652 1.70055 1.07634 1.44785 1.34356 0.85566 0.77322 0.79177 0.79395 1.19457 1.20345 1.19482 1.22769 1.01545 0.93499 0.87757 1.23170 0.80110 0.95298 1.04525 1.87987 1.23412 1.81219 1.37396 0.88693 0.92936 0.92918 0.90970 0.89946 0.88936 0.89150 0.87324 0.87181 0.94166 0.94081 0.97940 0.97976 0.92640 0.86887 0.88632 0.92944 0.84640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.21 10.67 -144.45 -1.54 -9.75 16 3 C 0.07 1.19 5.61 71.98 0.40 1.60 16 4 C 0.08 1.71 3.07 30.83 0.09 1.81 16 5 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 6 C 0.09 1.84 5.95 86.49 0.51 2.36 16 7 N -0.62 -15.05 3.01 -816.56 -2.46 -17.51 16 8 C 0.52 16.75 7.71 87.66 0.68 17.43 16 9 O -0.58 -23.54 15.45 -3.02 -0.05 -23.59 16 10 C -0.13 -4.12 4.07 29.85 0.12 -4.00 16 11 C -0.08 -3.60 4.44 30.59 0.14 -3.46 16 12 C 0.03 1.43 4.97 29.85 0.15 1.58 16 13 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 14 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 15 C 0.00 0.21 5.46 84.65 0.46 0.67 16 16 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 17 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 C 0.07 1.13 6.54 86.35 0.56 1.69 16 22 C 0.05 0.75 6.98 72.08 0.50 1.25 16 23 O -0.38 -7.97 10.35 -144.45 -1.49 -9.47 16 24 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.05 0.51 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 2.19 7.08 -2.39 -0.02 2.17 16 31 H 0.11 3.07 7.66 -2.39 -0.02 3.06 16 32 H 0.11 3.10 8.01 -2.39 -0.02 3.09 16 33 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 34 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 35 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.11 1.71 6.05 -2.39 -0.01 1.70 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.73 337.32 2.86 -71.87 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.99 Total: 6.64 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 5.11 Total: -9.52 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -2.18 Total: -73.32 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -3.08 Total: -42.81 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -74.73 2.86 -71.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594298411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.666 kcal (2) G-P(sol) polarization free energy of solvation -74.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds