Wall clock time and date at job start Mon Mar 30 2020 04:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00205 * 2 1 4 4 C 1.52995 * 109.47460 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47297 * 65.00470 * 4 3 2 6 6 C 1.42895 * 114.00351 * 180.02562 * 5 4 3 7 7 C 1.53498 * 114.20820 * 209.99998 * 6 5 4 8 8 N 1.47067 * 87.98280 * 220.14523 * 7 6 5 9 9 C 1.34777 * 136.05471 * 207.07965 * 8 7 6 10 10 O 1.21279 * 120.00166 * 0.02562 * 9 8 7 11 11 C 1.50706 * 120.00142 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.46957 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46626 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00270 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99835 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00496 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47183 * 60.00274 * 18 16 14 20 20 H 1.48496 * 109.47425 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47216 * 300.00267 * 18 16 14 22 22 C 1.47067 * 87.88709 * 27.33803 * 8 7 6 23 23 H 1.09002 * 109.46989 * 299.99676 * 1 2 3 24 24 H 1.08999 * 109.47093 * 60.00242 * 1 2 3 25 25 H 1.08999 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46851 * 59.99701 * 3 2 1 27 27 H 1.09003 * 109.47196 * 300.00290 * 3 2 1 28 28 H 1.09001 * 109.47240 * 305.00003 * 4 3 2 29 29 H 1.09006 * 109.47274 * 185.00143 * 4 3 2 30 30 H 1.09003 * 113.28183 * 343.06243 * 6 5 4 31 31 H 1.08993 * 113.47322 * 105.36424 * 7 6 5 32 32 H 1.08999 * 113.46008 * 334.91974 * 7 6 5 33 33 H 1.08993 * 109.46700 * 59.99973 * 11 9 8 34 34 H 1.09000 * 109.46974 * 300.00347 * 11 9 8 35 35 H 1.08993 * 109.47839 * 60.00178 * 12 11 9 36 36 H 1.09000 * 109.47160 * 299.99740 * 12 11 9 37 37 H 1.09000 * 109.47050 * 299.99699 * 13 12 11 38 38 H 1.09001 * 109.46801 * 59.99811 * 13 12 11 39 39 H 0.96992 * 120.00038 * 180.02562 * 17 16 14 40 40 H 1.09004 * 113.46270 * 87.43894 * 22 8 7 41 41 H 1.09001 * 113.46751 * 217.87254 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5798 -1.2220 6 6 5.3810 0.4193 -1.3247 7 6 5.9189 0.4800 -2.7611 8 7 6.8324 -0.6178 -2.4100 9 6 8.0390 -1.0478 -2.8293 10 8 8.6175 -0.4590 -3.7178 11 6 8.6699 -2.2597 -2.1932 12 6 10.0262 -2.5310 -2.8472 13 6 10.6663 -3.7618 -2.2018 14 6 12.0019 -4.0295 -2.8464 15 1 12.3583 -3.3865 -3.6376 16 6 12.7690 -5.0954 -2.4262 17 7 12.3347 -5.8788 -1.4631 18 14 14.4241 -5.4277 -3.2256 19 1 15.3105 -4.2513 -3.0363 20 1 15.0456 -6.6221 -2.5992 21 1 14.2321 -5.6742 -4.6774 22 6 5.8471 -1.0437 -1.4047 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5682 0.8409 29 1 3.9785 2.1766 0.0890 30 1 5.9366 1.0304 -0.6133 31 1 6.4312 1.4134 -2.9937 32 1 5.1794 0.2055 -3.5133 33 1 8.0195 -3.1231 -2.3326 34 1 8.8104 -2.0789 -1.1275 35 1 10.6763 -1.6675 -2.7075 36 1 9.8860 -2.7116 -3.9130 37 1 10.8065 -3.5817 -1.1360 38 1 10.0160 -4.6252 -2.3420 39 1 12.8745 -6.6284 -1.1672 40 1 5.0887 -1.7198 -1.7996 41 1 6.2983 -1.4083 -0.4819 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594307376.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:05 Heat of formation + Delta-G solvation = -123.959022 kcal Electronic energy + Delta-G solvation = -20067.845631 eV Core-core repulsion = 16755.310634 eV Total energy + Delta-G solvation = -3312.534998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51873 -39.67221 -38.79403 -37.25838 -36.13100 -34.04620 -31.62446 -30.51349 -28.92588 -27.09858 -27.08050 -25.60380 -23.51261 -23.04467 -21.83711 -19.98923 -18.61911 -18.39577 -17.93067 -17.62939 -16.89716 -16.79693 -16.48413 -16.38929 -16.22274 -15.54605 -15.18130 -14.78005 -14.46407 -14.38999 -13.97090 -13.74725 -13.54368 -13.21554 -13.08693 -12.80985 -12.62539 -12.54176 -12.44034 -12.39301 -12.07889 -11.90035 -11.58690 -11.49388 -11.30091 -10.87951 -10.59702 -10.54506 -10.45641 -9.83534 -8.20354 -6.30603 1.39442 1.42695 1.50606 1.51652 1.66528 2.41530 2.73124 2.91398 3.12297 3.25048 3.51918 3.87359 4.02078 4.14228 4.19830 4.24959 4.30488 4.44754 4.48003 4.52732 4.55383 4.59900 4.62781 4.64893 4.65952 4.76887 4.87877 4.91239 4.91798 4.96126 5.08469 5.17444 5.52375 5.73178 5.85132 6.16738 6.26448 6.31494 6.59754 6.84135 7.06321 7.37802 8.91051 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.039021 B = 0.002475 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.389118 B =11312.562823 C =11806.424671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.057 3.943 4 C 0.054 3.946 5 O -0.376 6.376 6 C 0.071 3.929 7 C 0.094 3.906 8 N -0.653 5.653 9 C 0.547 3.453 10 O -0.584 6.584 11 C -0.121 4.121 12 C -0.083 4.083 13 C 0.027 3.973 14 C -0.549 4.549 15 H 0.052 0.948 16 C 0.002 3.998 17 N -0.929 5.929 18 Si 0.964 3.036 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.270 1.270 22 C 0.081 3.919 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.043 0.957 36 H 0.040 0.960 37 H 0.002 0.998 38 H 0.000 1.000 39 H 0.265 0.735 40 H 0.097 0.903 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.177 16.015 6.945 30.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.019 4.019 4 C -0.022 4.022 5 O -0.294 6.294 6 C 0.012 3.988 7 C -0.029 4.029 8 N -0.390 5.390 9 C 0.339 3.661 10 O -0.464 6.464 11 C -0.160 4.160 12 C -0.121 4.121 13 C -0.010 4.010 14 C -0.587 4.587 15 H 0.070 0.930 16 C -0.196 4.196 17 N -0.569 5.569 18 Si 0.788 3.212 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.041 4.041 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.021 0.979 38 H 0.019 0.981 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.656 15.880 6.368 30.011 hybrid contribution 0.807 -0.218 -0.346 0.904 sum -23.850 15.663 6.023 29.162 Atomic orbital electron populations 1.22882 0.79787 1.03525 1.00802 1.87921 1.21193 1.28790 1.95605 1.22745 0.92099 0.84982 1.02104 1.22889 0.93768 0.98853 0.86691 1.87974 1.20252 1.81767 1.39363 1.23794 0.82400 0.95884 0.96756 1.23311 0.90393 0.91024 0.98126 1.49352 1.16216 1.32787 1.40599 1.20646 0.79024 0.85068 0.81381 1.90666 1.63325 1.59461 1.32911 1.21607 0.97365 0.95126 1.01910 1.21188 0.94026 0.98162 0.98700 1.19006 0.94374 0.92532 0.95080 1.21654 1.04716 1.12493 1.19818 0.92997 1.25931 1.02285 0.95720 0.95661 1.70062 1.39669 1.17625 1.29542 0.85527 0.79082 0.77829 0.78774 1.19355 1.20305 1.19483 1.23794 0.89342 0.98649 0.92353 0.92700 0.93528 0.89287 0.89408 0.92302 0.91646 0.88988 0.85703 0.90064 0.88968 0.87879 0.87379 0.93810 0.94132 0.97916 0.98149 0.92621 0.88465 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -6.78 10.67 -144.35 -1.54 -8.32 16 3 C 0.06 0.60 6.32 71.98 0.45 1.06 16 4 C 0.05 0.57 6.16 71.98 0.44 1.02 16 5 O -0.38 -6.10 10.36 -144.35 -1.50 -7.60 16 6 C 0.07 1.09 4.68 31.01 0.15 1.24 16 7 C 0.09 1.95 8.45 83.18 0.70 2.65 16 8 N -0.65 -17.12 3.69 -858.31 -3.16 -20.28 16 9 C 0.55 19.24 8.08 87.66 0.71 19.95 16 10 O -0.58 -25.65 16.76 -3.03 -0.05 -25.70 16 11 C -0.12 -4.22 5.53 29.85 0.17 -4.06 16 12 C -0.08 -3.78 4.44 30.60 0.14 -3.65 16 13 C 0.03 1.47 4.97 29.85 0.15 1.62 16 14 C -0.55 -32.82 9.11 25.60 0.23 -32.59 16 15 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 16 C 0.00 0.12 5.46 84.65 0.46 0.58 16 17 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 18 Si 0.96 45.71 29.54 68.60 2.03 47.74 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 C 0.08 1.49 8.28 83.27 0.69 2.18 16 23 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 24 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.13 1.43 7.88 -2.39 -0.02 1.41 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 35 H 0.04 2.07 8.10 -2.39 -0.02 2.05 16 36 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 37 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -77.16 350.36 2.58 -74.59 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 0.98 Total: 4.79 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 5.54 Total: -8.50 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -2.88 Total: -77.00 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -3.09 Total: -41.62 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -77.16 2.58 -74.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594307376.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.374 kcal (2) G-P(sol) polarization free energy of solvation -77.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds