Wall clock time and date at job start Mon Mar 30 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34236 * 116.99857 * 2 1 4 4 O 1.20826 * 120.00106 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99895 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47169 * 180.02562 * 5 3 2 7 7 C 1.36943 * 119.99947 * 269.99976 * 6 5 3 8 8 H 1.07997 * 120.00439 * 188.67528 * 7 6 5 9 9 C 1.38817 * 119.99801 * 8.68356 * 7 6 5 10 10 N 1.31616 * 120.00301 * 24.79298 * 9 7 6 11 11 Si 1.86802 * 119.99548 * 204.79844 * 9 7 6 12 12 H 1.48494 * 109.47285 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47130 * 119.99946 * 11 9 7 14 14 H 1.48506 * 109.46695 * 239.99262 * 11 9 7 15 15 C 1.46501 * 120.00335 * 89.99945 * 6 5 3 16 16 C 1.53004 * 109.46673 * 83.64135 * 15 6 5 17 17 H 1.08997 * 109.47234 * 305.00457 * 16 15 6 18 18 O 1.42903 * 109.47017 * 65.00278 * 16 15 6 19 19 C 1.42894 * 114.00215 * 269.99541 * 18 16 15 20 20 C 1.53003 * 109.46653 * 185.00205 * 16 15 6 21 21 C 1.53783 * 113.61173 * 279.13694 * 20 16 15 22 22 C 1.53957 * 87.01777 * 220.05150 * 21 20 16 23 23 C 1.53778 * 113.61160 * 181.53121 * 20 16 15 24 24 H 1.09005 * 109.47634 * 59.99508 * 1 2 3 25 25 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47160 * 299.99392 * 1 2 3 27 27 H 1.09007 * 109.46915 * 60.00260 * 5 3 2 28 28 H 1.08996 * 109.47372 * 300.00464 * 5 3 2 29 29 H 0.96996 * 119.99930 * 180.02562 * 10 9 7 30 30 H 1.09000 * 109.47413 * 203.64222 * 15 6 5 31 31 H 1.08992 * 109.47026 * 323.64645 * 15 6 5 32 32 H 1.09001 * 109.47112 * 300.00787 * 19 18 16 33 33 H 1.09006 * 109.47033 * 60.00464 * 19 18 16 34 34 H 1.09000 * 109.47480 * 179.97438 * 19 18 16 35 35 H 1.08997 * 112.84762 * 50.33425 * 20 16 15 36 36 H 1.08994 * 113.61707 * 334.56762 * 21 20 16 37 37 H 1.09001 * 113.61272 * 105.47585 * 21 20 16 38 38 H 1.09007 * 113.53729 * 270.81687 * 22 21 20 39 39 H 1.08998 * 113.74718 * 139.94815 * 22 21 20 40 40 H 1.09006 * 113.61463 * 254.52892 * 23 20 16 41 41 H 1.09004 * 113.61871 * 25.43367 * 23 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1762 3.3367 -1.1847 8 1 4.6151 4.3235 -1.1897 9 6 3.8092 2.7342 -2.3802 10 7 2.8720 1.8101 -2.3910 11 14 4.6455 3.2351 -3.9737 12 1 5.6559 4.2865 -3.6932 13 1 5.3141 2.0531 -4.5746 14 1 3.6308 3.7641 -4.9202 15 6 4.1888 3.3820 1.2700 16 6 5.5966 3.0872 1.7920 17 1 5.7392 2.0090 1.8635 18 8 6.5625 3.6369 0.8936 19 6 6.9694 2.7403 -0.1420 20 6 5.7699 3.7175 3.1753 21 6 6.0947 5.2200 3.1313 22 6 7.0811 4.9586 4.2840 23 6 7.1703 3.5100 3.7757 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 3.9563 0.7807 -0.8892 28 1 3.9557 0.7810 0.8907 29 1 2.6159 1.3889 -3.2264 30 1 4.0764 4.4549 1.1142 31 1 3.4527 3.0415 1.9981 32 1 7.4135 1.8496 0.3023 33 1 6.1019 2.4554 -0.7375 34 1 7.7025 3.2322 -0.7812 35 1 4.9597 3.4658 3.8596 36 1 6.5776 5.5354 2.2065 37 1 5.2549 5.8566 3.4099 38 1 6.6294 5.0475 5.2721 39 1 8.0165 5.5110 4.1951 40 1 7.1977 2.7681 4.5738 41 1 7.9480 3.3571 3.0273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595342470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:47 Heat of formation + Delta-G solvation = -79.519002 kcal Electronic energy + Delta-G solvation = -22647.864315 eV Core-core repulsion = 19337.256381 eV Total energy + Delta-G solvation = -3310.607934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.24646 -38.81212 -36.68181 -35.44133 -34.37199 -31.66358 -29.52020 -28.01918 -26.06086 -25.48298 -25.31082 -24.90093 -22.31283 -20.74094 -19.56371 -18.96365 -17.01411 -16.30112 -15.73841 -15.62490 -15.40547 -15.09761 -14.85922 -14.49771 -14.24377 -13.54005 -13.19205 -12.91814 -12.44115 -12.26974 -12.11825 -12.06556 -11.90460 -11.43059 -11.19477 -11.13458 -10.98419 -10.86751 -10.53057 -10.34765 -10.23187 -10.10223 -10.03440 -9.77482 -9.61284 -9.59013 -9.44133 -8.83421 -8.29883 -6.97975 -5.94263 -3.19964 3.33742 3.43647 3.46034 3.88289 4.05507 4.45315 4.52973 4.87543 4.98438 5.04715 5.14555 5.27463 5.36180 5.80426 5.81074 5.85855 5.87351 5.93669 6.03437 6.06532 6.10366 6.10512 6.13626 6.21470 6.27973 6.28998 6.37301 6.50236 6.55970 6.67268 6.84845 6.88806 6.99424 7.09673 7.71962 7.81153 8.03534 8.16214 9.02845 9.39999 9.70846 10.12224 11.16957 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.007326 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.599592 B = 3821.274986 C = 5100.024096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.384 6.384 3 C 0.466 3.534 4 O -0.509 6.509 5 C 0.187 3.813 6 N -0.569 5.569 7 C -0.237 4.237 8 H 0.086 0.914 9 C -0.004 4.004 10 N -0.904 5.904 11 Si 0.900 3.100 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.293 1.293 15 C 0.129 3.871 16 C 0.083 3.917 17 H 0.050 0.950 18 O -0.377 6.377 19 C 0.019 3.981 20 C -0.110 4.110 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.132 4.132 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.044 0.956 27 H 0.114 0.886 28 H 0.049 0.951 29 H 0.256 0.744 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.015 0.985 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 -1.483 9.480 10.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.301 6.301 3 C 0.306 3.694 4 O -0.393 6.393 5 C 0.058 3.942 6 N -0.288 5.288 7 C -0.366 4.366 8 H 0.103 0.897 9 C -0.201 4.201 10 N -0.550 5.550 11 Si 0.730 3.270 12 H -0.200 1.200 13 H -0.215 1.215 14 H -0.220 1.220 15 C 0.003 3.997 16 C 0.023 3.977 17 H 0.068 0.932 18 O -0.296 6.296 19 C -0.077 4.077 20 C -0.129 4.129 21 C -0.163 4.163 22 C -0.182 4.182 23 C -0.169 4.169 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.131 0.869 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.787 -1.025 9.343 10.548 hybrid contribution -0.290 -0.018 -1.109 1.147 sum 4.497 -1.044 8.233 9.439 Atomic orbital electron populations 1.22837 0.80013 1.01200 1.01173 1.86551 1.20853 1.36929 1.85795 1.25591 0.93509 0.80151 0.70106 1.90461 1.66670 1.36508 1.45710 1.20502 0.85567 0.86938 1.01234 1.44220 1.75211 1.07401 1.01977 1.19348 1.33191 1.01485 0.82561 0.89655 1.24754 0.97722 0.99693 0.97919 1.69837 1.28028 1.30891 1.26226 0.86224 0.79384 0.77848 0.83546 1.20017 1.21454 1.21989 1.21346 0.92936 0.97554 0.87897 1.22548 0.91005 0.96001 0.88135 0.93194 1.87690 1.59729 1.40730 1.41482 1.23116 1.01596 0.92015 0.90989 1.22650 0.97266 0.97183 0.95835 1.22818 0.98706 0.95770 0.99006 1.22835 0.99754 0.97310 0.98262 1.22863 0.97899 0.96335 0.99817 0.92918 0.90230 0.93741 0.86869 0.93316 0.93295 0.91994 0.94256 0.96614 0.88482 0.91859 0.88968 0.88816 0.92278 0.90965 0.92045 0.92419 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.55 101.05 1.07 1.84 16 2 O -0.38 -8.40 10.57 -39.27 -0.41 -8.82 16 3 C 0.47 11.41 6.02 36.01 0.22 11.63 16 4 O -0.51 -14.10 15.90 -18.75 -0.30 -14.40 16 5 C 0.19 4.26 5.56 -5.20 -0.03 4.23 16 6 N -0.57 -13.28 1.10 -174.61 -0.19 -13.47 16 7 C -0.24 -6.11 6.91 -15.05 -0.10 -6.21 16 8 H 0.09 2.24 7.94 -52.49 -0.42 1.83 16 9 C 0.00 -0.10 4.90 -17.43 -0.09 -0.18 16 10 N -0.90 -25.05 8.95 55.49 0.50 -24.56 16 11 Si 0.90 21.10 29.62 -169.99 -5.04 16.07 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 C 0.13 2.62 5.33 -4.04 -0.02 2.60 16 16 C 0.08 1.43 2.48 -26.73 -0.07 1.37 16 17 H 0.05 0.86 7.69 -51.93 -0.40 0.46 16 18 O -0.38 -6.99 8.36 -35.23 -0.29 -7.28 16 19 C 0.02 0.34 10.39 101.05 1.05 1.39 16 20 C -0.11 -1.57 3.58 -89.81 -0.32 -1.89 16 21 C -0.13 -1.74 7.49 -25.83 -0.19 -1.93 16 22 C -0.14 -1.70 8.09 -25.83 -0.21 -1.91 16 23 C -0.13 -1.67 7.54 -25.92 -0.20 -1.87 16 24 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.76 8.13 -51.92 -0.42 0.34 16 27 H 0.11 2.76 6.31 -51.93 -0.33 2.43 16 28 H 0.05 0.95 7.97 -51.93 -0.41 0.54 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 30 H 0.06 1.33 7.99 -51.93 -0.41 0.91 16 31 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.02 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.10 2.04 4.48 -51.93 -0.23 1.80 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.46 7.03 -51.93 -0.36 1.10 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.15 7.72 -51.93 -0.40 0.75 16 LS Contribution 329.54 15.07 4.97 4.97 Total: -1.00 -30.00 329.54 -6.42 -36.42 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.75 Total: 2.01 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 1.11 Total: 9.06 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.30 Total: -38.02 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.01 Total: -30.50 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.04 Total: 16.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.00 -6.42 -36.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595342470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.103 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds