Wall clock time and date at job start Mon Mar 30 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34236 * 116.99857 * 2 1 4 4 O 1.20826 * 120.00106 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99895 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47169 * 180.02562 * 5 3 2 7 7 C 1.36943 * 119.99947 * 269.99976 * 6 5 3 8 8 H 1.07997 * 120.00439 * 188.67528 * 7 6 5 9 9 C 1.38817 * 119.99801 * 8.68356 * 7 6 5 10 10 N 1.31616 * 120.00301 * 24.79298 * 9 7 6 11 11 Si 1.86802 * 119.99548 * 204.79844 * 9 7 6 12 12 H 1.48494 * 109.47285 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47130 * 119.99946 * 11 9 7 14 14 H 1.48506 * 109.46695 * 239.99262 * 11 9 7 15 15 C 1.46501 * 120.00335 * 89.99945 * 6 5 3 16 16 C 1.53004 * 109.46673 * 83.64135 * 15 6 5 17 17 H 1.08997 * 109.47234 * 305.00457 * 16 15 6 18 18 O 1.42903 * 109.47017 * 65.00278 * 16 15 6 19 19 C 1.42894 * 114.00215 * 269.99541 * 18 16 15 20 20 C 1.53003 * 109.46653 * 185.00205 * 16 15 6 21 21 C 1.53783 * 113.61173 * 279.13694 * 20 16 15 22 22 C 1.53957 * 87.01777 * 220.05150 * 21 20 16 23 23 C 1.53778 * 113.61160 * 181.53121 * 20 16 15 24 24 H 1.09005 * 109.47634 * 59.99508 * 1 2 3 25 25 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47160 * 299.99392 * 1 2 3 27 27 H 1.09007 * 109.46915 * 60.00260 * 5 3 2 28 28 H 1.08996 * 109.47372 * 300.00464 * 5 3 2 29 29 H 0.96996 * 119.99930 * 180.02562 * 10 9 7 30 30 H 1.09000 * 109.47413 * 203.64222 * 15 6 5 31 31 H 1.08992 * 109.47026 * 323.64645 * 15 6 5 32 32 H 1.09001 * 109.47112 * 300.00787 * 19 18 16 33 33 H 1.09006 * 109.47033 * 60.00464 * 19 18 16 34 34 H 1.09000 * 109.47480 * 179.97438 * 19 18 16 35 35 H 1.08997 * 112.84762 * 50.33425 * 20 16 15 36 36 H 1.08994 * 113.61707 * 334.56762 * 21 20 16 37 37 H 1.09001 * 113.61272 * 105.47585 * 21 20 16 38 38 H 1.09007 * 113.53729 * 270.81687 * 22 21 20 39 39 H 1.08998 * 113.74718 * 139.94815 * 22 21 20 40 40 H 1.09006 * 113.61463 * 254.52892 * 23 20 16 41 41 H 1.09004 * 113.61871 * 25.43367 * 23 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.1762 3.3367 -1.1847 8 1 4.6151 4.3235 -1.1897 9 6 3.8092 2.7342 -2.3802 10 7 2.8720 1.8101 -2.3910 11 14 4.6455 3.2351 -3.9737 12 1 5.6559 4.2865 -3.6932 13 1 5.3141 2.0531 -4.5746 14 1 3.6308 3.7641 -4.9202 15 6 4.1888 3.3820 1.2700 16 6 5.5966 3.0872 1.7920 17 1 5.7392 2.0090 1.8635 18 8 6.5625 3.6369 0.8936 19 6 6.9694 2.7403 -0.1420 20 6 5.7699 3.7175 3.1753 21 6 6.0947 5.2200 3.1313 22 6 7.0811 4.9586 4.2840 23 6 7.1703 3.5100 3.7757 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 3.9563 0.7807 -0.8892 28 1 3.9557 0.7810 0.8907 29 1 2.6159 1.3889 -3.2264 30 1 4.0764 4.4549 1.1142 31 1 3.4527 3.0415 1.9981 32 1 7.4135 1.8496 0.3023 33 1 6.1019 2.4554 -0.7375 34 1 7.7025 3.2322 -0.7812 35 1 4.9597 3.4658 3.8596 36 1 6.5776 5.5354 2.2065 37 1 5.2549 5.8566 3.4099 38 1 6.6294 5.0475 5.2721 39 1 8.0165 5.5110 4.1951 40 1 7.1977 2.7681 4.5738 41 1 7.9480 3.3571 3.0273 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595342470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:47 Heat of formation + Delta-G solvation = -95.764953 kcal Electronic energy + Delta-G solvation = -22648.568792 eV Core-core repulsion = 19337.256381 eV Total energy + Delta-G solvation = -3311.312411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86488 -40.29260 -38.12894 -37.11043 -36.24040 -33.51712 -31.10193 -29.73182 -27.69338 -26.91586 -26.67013 -26.16850 -23.89921 -22.29114 -21.34779 -20.05924 -18.90822 -18.12831 -17.34013 -17.10708 -16.94202 -16.73959 -16.47712 -15.98268 -15.65341 -15.32953 -14.91351 -14.20119 -14.09214 -13.91418 -13.55132 -13.35501 -13.17454 -13.08408 -12.77498 -12.73201 -12.66132 -12.36507 -12.23183 -12.04198 -11.94751 -11.61552 -11.38685 -11.27870 -11.25414 -11.02318 -10.79961 -10.67970 -10.12387 -8.80827 -7.94682 -5.20418 1.44932 1.50134 1.59122 2.01347 2.32850 2.56692 3.15393 3.25008 3.49130 3.81537 3.97075 4.04848 4.11046 4.38282 4.45049 4.48118 4.53522 4.55658 4.62632 4.69384 4.73549 4.82324 4.91404 4.92813 4.98933 5.07510 5.10921 5.14872 5.19224 5.25155 5.29327 5.47459 5.53057 5.69020 5.79311 5.96117 6.20389 6.63273 7.04951 7.50613 7.80356 8.17076 9.14479 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.007326 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.599592 B = 3821.274986 C = 5100.024096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.386 6.386 3 C 0.468 3.532 4 O -0.549 6.549 5 C 0.189 3.811 6 N -0.577 5.577 7 C -0.228 4.228 8 H 0.074 0.926 9 C -0.049 4.049 10 N -0.929 5.929 11 Si 0.955 3.045 12 H -0.268 1.268 13 H -0.284 1.284 14 H -0.307 1.307 15 C 0.131 3.869 16 C 0.092 3.908 17 H 0.055 0.945 18 O -0.386 6.386 19 C 0.021 3.979 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.125 4.125 24 H 0.032 0.968 25 H 0.126 0.874 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.249 0.751 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.022 -2.090 11.126 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.303 6.303 3 C 0.310 3.690 4 O -0.438 6.438 5 C 0.059 3.941 6 N -0.297 5.297 7 C -0.357 4.357 8 H 0.092 0.908 9 C -0.243 4.243 10 N -0.577 5.577 11 Si 0.785 3.215 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.235 1.235 15 C 0.005 3.995 16 C 0.032 3.968 17 H 0.073 0.927 18 O -0.305 6.305 19 C -0.075 4.075 20 C -0.132 4.132 21 C -0.170 4.170 22 C -0.168 4.168 23 C -0.163 4.163 24 H 0.051 0.949 25 H 0.144 0.856 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.834 -1.642 11.017 12.574 hybrid contribution -0.673 0.164 -1.574 1.719 sum 5.161 -1.479 9.444 10.863 Atomic orbital electron populations 1.23141 0.77706 1.04086 1.00587 1.86508 1.23096 1.35504 1.85190 1.25850 0.94142 0.80133 0.68870 1.90435 1.67668 1.37900 1.47782 1.20511 0.84825 0.86766 1.01976 1.44338 1.75291 1.07771 1.02309 1.19352 1.31777 1.00894 0.83693 0.90841 1.25300 0.98445 1.00428 1.00176 1.69967 1.29397 1.32323 1.26053 0.85372 0.78179 0.77634 0.80313 1.19246 1.21023 1.23537 1.21469 0.95168 0.96057 0.86819 1.22442 0.88592 0.96526 0.89214 0.92734 1.87702 1.59833 1.41323 1.41684 1.23036 1.00626 0.92889 0.90932 1.22740 0.99024 0.97201 0.94232 1.22799 0.99459 0.95580 0.99182 1.22800 0.99441 0.96462 0.98134 1.22807 0.96031 0.97536 0.99895 0.94884 0.85601 0.92994 0.88528 0.89845 0.94162 0.93979 0.93871 0.94641 0.91366 0.90950 0.87543 0.91026 0.92057 0.89076 0.91357 0.90521 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.36 10.55 113.37 1.20 2.55 16 2 O -0.39 -16.58 10.57 -51.47 -0.54 -17.13 16 3 C 0.47 22.89 6.02 71.24 0.43 23.32 16 4 O -0.55 -30.84 15.90 21.96 0.35 -30.49 16 5 C 0.19 8.54 5.56 85.63 0.48 9.02 16 6 N -0.58 -27.06 1.10 -706.34 -0.78 -27.84 16 7 C -0.23 -11.87 6.91 84.03 0.58 -11.29 16 8 H 0.07 3.94 7.94 -2.91 -0.02 3.92 16 9 C -0.05 -2.64 4.90 84.86 0.42 -2.22 16 10 N -0.93 -52.45 8.95 21.65 0.19 -52.26 16 11 Si 0.96 44.16 29.62 68.60 2.03 46.19 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.31 -14.84 7.11 99.48 0.71 -14.13 16 15 C 0.13 5.25 5.33 86.38 0.46 5.71 16 16 C 0.09 3.05 2.48 30.60 0.08 3.12 16 17 H 0.05 1.76 7.69 -2.39 -0.02 1.74 16 18 O -0.39 -13.97 8.36 -148.98 -1.25 -15.22 16 19 C 0.02 0.76 10.39 113.37 1.18 1.93 16 20 C -0.11 -2.98 3.58 -10.27 -0.04 -3.02 16 21 C -0.13 -3.48 7.49 31.18 0.23 -3.25 16 22 C -0.13 -2.70 8.09 31.18 0.25 -2.45 16 23 C -0.13 -2.81 7.54 31.12 0.23 -2.57 16 24 H 0.03 1.27 8.13 -2.38 -0.02 1.25 16 25 H 0.13 3.16 8.14 -2.38 -0.02 3.14 16 26 H 0.05 1.72 8.13 -2.38 -0.02 1.70 16 27 H 0.10 4.75 6.31 -2.38 -0.02 4.73 16 28 H 0.08 3.13 7.97 -2.39 -0.02 3.11 16 29 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 30 H 0.04 1.83 7.99 -2.39 -0.02 1.81 16 31 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 32 H 0.04 1.09 8.08 -2.39 -0.02 1.07 16 33 H 0.07 2.84 4.48 -2.38 -0.01 2.83 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.11 2.52 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.20 7.03 -2.39 -0.02 2.18 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.07 1.82 7.72 -2.38 -0.02 1.80 16 Total: -1.00 -65.03 329.54 6.50 -58.54 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 1.00 Total: 17.35 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 5.49 Total: 20.85 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -0.58 Total: -80.10 kcal Atomic # 8 Polarization: -61.39 SS G_CDS: -1.44 Total: -62.83 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.03 6.50 -58.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595342470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.230 kcal (2) G-P(sol) polarization free energy of solvation -65.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds