Wall clock time and date at job start Mon Mar 30 2020 04:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00428 * 2 1 4 4 C 1.53003 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47128 * 305.00029 * 4 3 2 6 6 O 1.42902 * 109.46611 * 65.00686 * 4 3 2 7 7 C 1.42903 * 113.99286 * 269.99613 * 6 4 3 8 8 C 1.50699 * 109.46983 * 184.99836 * 4 3 2 9 9 O 1.21277 * 120.00354 * 245.00574 * 8 4 3 10 10 N 1.34782 * 119.99829 * 65.00418 * 8 4 3 11 11 C 1.46497 * 119.99964 * 179.97438 * 10 8 4 12 12 H 1.09001 * 110.01673 * 326.39111 * 11 10 8 13 13 C 1.53871 * 110.07488 * 87.81070 * 11 10 8 14 14 C 1.54269 * 106.59813 * 119.30490 * 13 11 10 15 15 C 1.54885 * 104.19677 * 23.61322 * 14 13 11 16 16 H 1.09002 * 110.75709 * 80.37016 * 15 14 13 17 17 C 1.50697 * 110.91369 * 203.67045 * 15 14 13 18 18 H 1.07991 * 120.00281 * 115.95471 * 17 15 14 19 19 C 1.37879 * 119.99754 * 295.94927 * 17 15 14 20 20 N 1.31515 * 119.99783 * 180.02562 * 19 17 15 21 21 Si 1.86800 * 120.00218 * 0.02562 * 19 17 15 22 22 H 1.48497 * 109.47271 * 89.99425 * 21 19 17 23 23 H 1.48501 * 109.46781 * 209.99993 * 21 19 17 24 24 H 1.48507 * 109.46810 * 329.99359 * 21 19 17 25 25 C 1.54271 * 110.03233 * 205.00147 * 11 10 8 26 26 H 1.09001 * 109.46907 * 300.00335 * 1 2 3 27 27 H 1.08996 * 109.47029 * 59.99719 * 1 2 3 28 28 H 1.08997 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46897 * 59.99761 * 3 2 1 30 30 H 1.08996 * 109.47341 * 300.00251 * 3 2 1 31 31 H 1.08995 * 109.47295 * 60.00432 * 7 6 4 32 32 H 1.09003 * 109.46618 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47245 * 299.99724 * 7 6 4 34 34 H 0.97004 * 120.00030 * 0.02562 * 10 8 4 35 35 H 1.09000 * 110.03307 * 238.59242 * 13 11 10 36 36 H 1.09002 * 110.03084 * 0.02562 * 13 11 10 37 37 H 1.09002 * 110.48538 * 264.93327 * 14 13 11 38 38 H 1.08996 * 110.48433 * 142.29362 * 14 13 11 39 39 H 0.97005 * 119.99803 * 180.02562 * 20 19 17 40 40 H 1.09002 * 110.48367 * 98.38019 * 25 11 10 41 41 H 1.09003 * 110.48661 * 335.73439 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8508 0.5684 0.8427 6 8 3.9658 0.5792 -1.2202 7 6 4.0471 -0.8464 -1.1649 8 6 4.1480 2.5559 0.1244 9 8 4.8069 3.0103 -0.7867 10 7 3.9636 3.2774 1.2478 11 6 4.5594 4.6102 1.3684 12 1 5.5139 4.6412 0.8428 13 6 3.6049 5.6698 0.7906 14 6 3.2622 6.6316 1.9471 15 6 4.4482 6.4798 2.9315 16 1 5.3031 7.0694 2.6004 17 6 4.0411 6.8713 4.3287 18 1 4.0425 6.1343 5.1181 19 6 3.6668 8.1704 4.5991 20 7 3.3120 8.5122 5.8185 21 14 3.6637 9.4451 3.2337 22 1 2.3331 9.4615 2.5748 23 1 3.9490 10.7850 3.8068 24 1 4.7070 9.1020 2.2339 25 6 4.7635 4.9653 2.8558 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.0652 -1.2576 -0.9306 32 1 4.3809 -1.2290 -2.1295 33 1 4.7578 -1.1401 -0.3924 34 1 3.4369 2.9138 1.9768 35 1 4.0960 6.2149 -0.0154 36 1 2.6974 5.1926 0.4206 37 1 2.3287 6.3354 2.4257 38 1 3.1969 7.6571 1.5836 39 1 3.0483 9.4261 6.0088 40 1 5.7941 4.7747 3.1555 41 1 4.0726 4.4000 3.4812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597716283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:50 Heat of formation + Delta-G solvation = -133.142422 kcal Electronic energy + Delta-G solvation = -21476.120094 eV Core-core repulsion = 18163.186874 eV Total energy + Delta-G solvation = -3312.933220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19223 -38.53215 -37.46461 -36.83804 -33.86871 -32.26968 -30.94405 -28.53922 -27.71931 -27.18522 -26.06871 -24.09163 -23.29858 -20.77871 -19.88408 -19.25941 -17.65035 -17.37728 -16.79873 -16.63796 -16.01383 -15.68148 -15.36159 -15.10389 -14.61862 -14.25529 -14.10660 -13.90682 -13.15121 -12.87184 -12.75743 -12.57989 -12.44467 -12.15017 -11.78261 -11.64225 -11.40624 -11.16536 -11.00545 -10.51205 -10.18825 -10.10444 -10.05514 -9.94135 -9.79140 -9.52934 -9.47921 -9.06399 -8.82387 -8.56695 -6.10605 -4.10050 2.50171 2.85741 3.27526 3.37432 3.39386 3.44244 3.94656 4.40073 4.54883 4.72105 4.77734 4.97645 5.04610 5.11520 5.16992 5.19697 5.29823 5.35157 5.37466 5.40481 5.42035 5.53679 5.64149 6.06144 6.07888 6.25263 6.36844 6.44742 6.51614 6.63336 6.71567 6.79209 6.83436 6.98904 7.05418 7.47426 7.60015 7.73218 8.27056 8.48252 8.92360 9.52464 11.02470 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028640 B = 0.003997 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.428955 B = 7003.617236 C = 7376.038173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.044 3.956 4 C 0.076 3.924 5 H 0.094 0.906 6 O -0.356 6.356 7 C 0.029 3.971 8 C 0.514 3.486 9 O -0.517 6.517 10 N -0.715 5.715 11 C 0.137 3.863 12 H 0.086 0.914 13 C -0.131 4.131 14 C -0.129 4.129 15 C 0.014 3.986 16 H 0.036 0.964 17 C -0.511 4.511 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.264 1.264 25 C -0.110 4.110 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.399 0.601 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.264 0.736 40 H 0.061 0.939 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.897 -16.940 -10.799 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.033 4.033 4 C 0.014 3.986 5 H 0.112 0.888 6 O -0.273 6.273 7 C -0.068 4.068 8 C 0.298 3.702 9 O -0.392 6.392 10 N -0.368 5.368 11 C 0.034 3.966 12 H 0.104 0.896 13 C -0.170 4.170 14 C -0.167 4.167 15 C -0.005 4.005 16 H 0.054 0.946 17 C -0.549 4.549 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.540 5.540 21 Si 0.709 3.291 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.189 1.189 25 C -0.148 4.148 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.234 0.766 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.305 -16.521 -11.532 20.417 hybrid contribution -0.735 0.645 -0.061 0.979 sum -4.039 -15.876 -11.593 20.069 Atomic orbital electron populations 1.22779 0.80513 1.02866 1.00410 1.87827 1.20206 1.27169 1.95530 1.23053 0.92522 0.85702 1.02063 1.21949 0.92450 0.93971 0.90213 0.88838 1.88017 1.87769 1.20085 1.31431 1.22942 1.01137 0.80442 1.02265 1.20047 0.81334 0.85814 0.83033 1.90722 1.39054 1.70709 1.38665 1.46304 1.54251 1.18461 1.17832 1.21899 0.96474 0.79675 0.98562 0.89627 1.22565 0.98596 0.97122 0.98728 1.22805 1.01487 0.96954 0.95495 1.20071 0.93634 0.91257 0.95543 0.94607 1.20962 1.44932 0.95982 0.92980 0.90821 1.24988 0.94513 0.98314 0.95203 1.69902 1.45601 1.18961 1.19552 0.86905 0.78999 0.80682 0.82510 1.20412 1.22145 1.18854 1.22585 1.00988 0.99473 0.91743 0.93674 0.93862 0.89471 0.91526 0.91622 0.92273 0.89641 0.94189 0.76586 0.92113 0.92486 0.91480 0.93541 0.92666 0.92058 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.88 8.83 -40.08 -0.35 -4.23 16 3 C 0.04 0.46 5.57 37.16 0.21 0.66 16 4 C 0.08 0.91 2.91 -27.88 -0.08 0.83 16 5 H 0.09 0.92 7.79 -51.93 -0.40 0.52 16 6 O -0.36 -4.86 9.88 -59.70 -0.59 -5.45 16 7 C 0.03 0.28 10.71 101.05 1.08 1.36 16 8 C 0.51 7.61 7.18 -10.98 -0.08 7.53 16 9 O -0.52 -9.88 16.16 -14.30 -0.23 -10.11 16 10 N -0.72 -9.75 4.89 -52.72 -0.26 -10.01 16 11 C 0.14 2.26 3.24 -66.81 -0.22 2.04 16 12 H 0.09 1.49 7.57 -51.93 -0.39 1.10 16 13 C -0.13 -2.28 6.59 -25.61 -0.17 -2.45 16 14 C -0.13 -2.63 5.21 -25.07 -0.13 -2.76 16 15 C 0.01 0.31 2.27 -89.78 -0.20 0.11 16 16 H 0.04 0.82 7.20 -51.93 -0.37 0.45 16 17 C -0.51 -13.68 9.11 -34.44 -0.31 -14.00 16 18 H 0.07 2.12 8.02 -52.49 -0.42 1.70 16 19 C 0.07 2.00 5.46 -17.82 -0.10 1.91 16 20 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 21 Si 0.88 21.39 24.60 -169.99 -4.18 17.21 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.26 -6.16 6.49 56.52 0.37 -5.80 16 25 C -0.11 -1.98 5.94 -25.07 -0.15 -2.13 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.59 7.77 -51.93 -0.40 0.19 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.55 6.40 -51.93 -0.33 0.22 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.40 4.40 8.06 -40.82 -0.33 4.07 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.92 7.92 -51.93 -0.41 0.51 16 37 H 0.07 1.38 8.05 -51.93 -0.42 0.97 16 38 H 0.05 0.98 5.17 -51.93 -0.27 0.71 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 1.19 7.64 -51.93 -0.40 0.80 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -32.67 329.19 -5.62 -38.29 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.70 Total: 1.13 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 0.96 Total: -5.56 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.52 Total: -36.22 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -1.18 Total: -19.80 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.18 Total: 17.21 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.67 -5.62 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597716283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.857 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds