Wall clock time and date at job start Mon Mar 30 2020 04:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00428 * 2 1 4 4 C 1.53003 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47128 * 305.00029 * 4 3 2 6 6 O 1.42902 * 109.46611 * 65.00686 * 4 3 2 7 7 C 1.42903 * 113.99286 * 269.99613 * 6 4 3 8 8 C 1.50699 * 109.46983 * 184.99836 * 4 3 2 9 9 O 1.21277 * 120.00354 * 245.00574 * 8 4 3 10 10 N 1.34782 * 119.99829 * 65.00418 * 8 4 3 11 11 C 1.46497 * 119.99964 * 179.97438 * 10 8 4 12 12 H 1.09001 * 110.01673 * 326.39111 * 11 10 8 13 13 C 1.53871 * 110.07488 * 87.81070 * 11 10 8 14 14 C 1.54269 * 106.59813 * 119.30490 * 13 11 10 15 15 C 1.54885 * 104.19677 * 23.61322 * 14 13 11 16 16 H 1.09002 * 110.75709 * 80.37016 * 15 14 13 17 17 C 1.50697 * 110.91369 * 203.67045 * 15 14 13 18 18 H 1.07991 * 120.00281 * 115.95471 * 17 15 14 19 19 C 1.37879 * 119.99754 * 295.94927 * 17 15 14 20 20 N 1.31515 * 119.99783 * 180.02562 * 19 17 15 21 21 Si 1.86800 * 120.00218 * 0.02562 * 19 17 15 22 22 H 1.48497 * 109.47271 * 89.99425 * 21 19 17 23 23 H 1.48501 * 109.46781 * 209.99993 * 21 19 17 24 24 H 1.48507 * 109.46810 * 329.99359 * 21 19 17 25 25 C 1.54271 * 110.03233 * 205.00147 * 11 10 8 26 26 H 1.09001 * 109.46907 * 300.00335 * 1 2 3 27 27 H 1.08996 * 109.47029 * 59.99719 * 1 2 3 28 28 H 1.08997 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46897 * 59.99761 * 3 2 1 30 30 H 1.08996 * 109.47341 * 300.00251 * 3 2 1 31 31 H 1.08995 * 109.47295 * 60.00432 * 7 6 4 32 32 H 1.09003 * 109.46618 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47245 * 299.99724 * 7 6 4 34 34 H 0.97004 * 120.00030 * 0.02562 * 10 8 4 35 35 H 1.09000 * 110.03307 * 238.59242 * 13 11 10 36 36 H 1.09002 * 110.03084 * 0.02562 * 13 11 10 37 37 H 1.09002 * 110.48538 * 264.93327 * 14 13 11 38 38 H 1.08996 * 110.48433 * 142.29362 * 14 13 11 39 39 H 0.97005 * 119.99803 * 180.02562 * 20 19 17 40 40 H 1.09002 * 110.48367 * 98.38019 * 25 11 10 41 41 H 1.09003 * 110.48661 * 335.73439 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8508 0.5684 0.8427 6 8 3.9658 0.5792 -1.2202 7 6 4.0471 -0.8464 -1.1649 8 6 4.1480 2.5559 0.1244 9 8 4.8069 3.0103 -0.7867 10 7 3.9636 3.2774 1.2478 11 6 4.5594 4.6102 1.3684 12 1 5.5139 4.6412 0.8428 13 6 3.6049 5.6698 0.7906 14 6 3.2622 6.6316 1.9471 15 6 4.4482 6.4798 2.9315 16 1 5.3031 7.0694 2.6004 17 6 4.0411 6.8713 4.3287 18 1 4.0425 6.1343 5.1181 19 6 3.6668 8.1704 4.5991 20 7 3.3120 8.5122 5.8185 21 14 3.6637 9.4451 3.2337 22 1 2.3331 9.4615 2.5748 23 1 3.9490 10.7850 3.8068 24 1 4.7070 9.1020 2.2339 25 6 4.7635 4.9653 2.8558 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.0652 -1.2576 -0.9306 32 1 4.3809 -1.2290 -2.1295 33 1 4.7578 -1.1401 -0.3924 34 1 3.4369 2.9138 1.9768 35 1 4.0960 6.2149 -0.0154 36 1 2.6974 5.1926 0.4206 37 1 2.3287 6.3354 2.4257 38 1 3.1969 7.6571 1.5836 39 1 3.0483 9.4261 6.0088 40 1 5.7941 4.7747 3.1555 41 1 4.0726 4.4000 3.4812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597716283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:49 Heat of formation + Delta-G solvation = -156.569488 kcal Electronic energy + Delta-G solvation = -21477.135967 eV Core-core repulsion = 18163.186874 eV Total energy + Delta-G solvation = -3313.949094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32993 -39.57296 -38.64073 -37.84443 -35.36288 -34.13119 -31.97071 -30.18208 -29.09216 -27.93990 -26.84220 -25.61509 -24.50640 -22.00771 -21.29215 -20.87275 -18.92503 -18.65341 -18.10322 -17.51064 -16.98181 -16.86738 -16.65051 -16.24089 -15.95433 -15.46434 -15.28557 -14.92096 -14.79374 -14.26207 -14.09899 -13.99752 -13.54806 -13.29385 -12.87771 -12.84934 -12.60651 -12.44842 -12.29918 -12.14947 -11.82340 -11.65887 -11.51308 -11.26562 -11.05727 -11.01551 -10.78615 -10.68034 -10.50161 -10.09160 -8.26775 -6.29232 1.34353 1.38807 1.40499 1.48146 1.79670 2.36224 2.68023 3.03050 3.09270 3.66551 3.76733 3.85515 3.91305 3.95576 4.09333 4.28230 4.42174 4.53124 4.56583 4.61551 4.62094 4.65283 4.70328 4.72849 4.86658 4.89797 4.95211 4.95407 4.98777 5.12257 5.20785 5.42800 5.58332 5.66514 5.78680 6.01204 6.06373 6.34495 6.51750 6.77656 7.15544 7.36671 8.89669 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.028640 B = 0.003997 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.428955 B = 7003.617236 C = 7376.038173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.049 3.951 4 C 0.080 3.920 5 H 0.118 0.882 6 O -0.387 6.387 7 C 0.026 3.974 8 C 0.517 3.483 9 O -0.563 6.563 10 N -0.703 5.703 11 C 0.148 3.852 12 H 0.079 0.921 13 C -0.123 4.123 14 C -0.125 4.125 15 C 0.005 3.995 16 H 0.030 0.970 17 C -0.508 4.508 18 H 0.040 0.960 19 C 0.015 3.985 20 N -0.951 5.951 21 Si 0.937 3.063 22 H -0.267 1.267 23 H -0.298 1.298 24 H -0.248 1.248 25 C -0.100 4.100 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.415 0.585 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.264 0.736 40 H 0.067 0.933 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 -18.219 -12.182 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.029 4.029 4 C 0.018 3.982 5 H 0.135 0.865 6 O -0.305 6.305 7 C -0.070 4.070 8 C 0.302 3.698 9 O -0.441 6.441 10 N -0.356 5.356 11 C 0.044 3.956 12 H 0.097 0.903 13 C -0.162 4.162 14 C -0.163 4.163 15 C -0.015 4.015 16 H 0.048 0.952 17 C -0.546 4.546 18 H 0.059 0.941 19 C -0.182 4.182 20 N -0.591 5.591 21 Si 0.763 3.237 22 H -0.192 1.192 23 H -0.226 1.226 24 H -0.172 1.172 25 C -0.139 4.139 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.252 0.748 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.861 -17.840 -12.906 22.355 hybrid contribution -0.568 0.945 0.437 1.186 sum -4.429 -16.895 -12.469 21.460 Atomic orbital electron populations 1.22967 0.79109 1.04156 1.00897 1.87798 1.21672 1.26744 1.95621 1.22953 0.91422 0.86133 1.02368 1.21939 0.93280 0.92266 0.90671 0.86472 1.87975 1.88097 1.22050 1.32421 1.23092 1.01810 0.78661 1.03401 1.20538 0.80381 0.86622 0.82221 1.90703 1.41181 1.71943 1.40255 1.46101 1.53875 1.17386 1.18268 1.21574 0.96298 0.80865 0.96894 0.90252 1.22492 0.99476 0.96691 0.97551 1.22661 1.00199 0.97518 0.95951 1.20056 0.94192 0.94012 0.93212 0.95179 1.21277 1.43562 0.95177 0.94581 0.94122 1.25782 0.94581 1.00596 0.97226 1.70042 1.47768 1.19509 1.21815 0.85984 0.79907 0.77770 0.80037 1.19199 1.22576 1.17196 1.22439 1.01567 0.96674 0.93171 0.92849 0.93708 0.87873 0.89801 0.92735 0.91807 0.88623 0.93016 0.74771 0.91799 0.90919 0.92015 0.94112 0.92704 0.91447 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.96 8.83 -144.35 -1.27 -8.24 16 3 C 0.05 0.89 5.57 71.98 0.40 1.30 16 4 C 0.08 1.73 2.91 29.85 0.09 1.82 16 5 H 0.12 1.95 7.79 -2.39 -0.02 1.93 16 6 O -0.39 -9.97 9.88 -125.59 -1.24 -11.21 16 7 C 0.03 0.46 10.71 113.37 1.21 1.67 16 8 C 0.52 14.27 7.18 87.66 0.63 14.90 16 9 O -0.56 -20.86 16.16 15.97 0.26 -20.60 16 10 N -0.70 -17.38 4.89 -439.10 -2.15 -19.52 16 11 C 0.15 4.55 3.24 45.72 0.15 4.69 16 12 H 0.08 2.61 7.57 -2.39 -0.02 2.59 16 13 C -0.12 -3.98 6.59 31.32 0.21 -3.77 16 14 C -0.13 -4.86 5.21 31.67 0.17 -4.70 16 15 C 0.00 0.19 2.27 -10.25 -0.02 0.17 16 16 H 0.03 1.34 7.20 -2.39 -0.02 1.33 16 17 C -0.51 -27.43 9.11 25.60 0.23 -27.20 16 18 H 0.04 2.40 8.02 -2.92 -0.02 2.38 16 19 C 0.02 0.85 5.46 84.65 0.46 1.32 16 20 N -0.95 -58.11 13.96 21.45 0.30 -57.81 16 21 Si 0.94 43.84 24.60 68.60 1.69 45.52 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 24 H -0.25 -10.87 6.49 99.48 0.65 -10.22 16 25 C -0.10 -3.46 5.94 31.67 0.19 -3.27 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.22 7.77 -2.38 -0.02 1.20 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.05 6.40 -2.39 -0.02 1.03 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.41 7.85 8.06 -92.71 -0.75 7.10 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 2.13 7.92 -2.39 -0.02 2.11 16 37 H 0.06 2.44 8.05 -2.39 -0.02 2.42 16 38 H 0.04 1.62 5.17 -2.39 -0.01 1.61 16 39 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.07 2.47 7.64 -2.39 -0.02 2.45 16 Total: -1.00 -70.88 329.19 2.75 -68.13 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.21 Total: 15.25 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 4.96 Total: -11.53 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -1.85 Total: -77.33 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -2.26 Total: -40.05 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.69 Total: 45.52 kcal Total: -70.88 2.75 -68.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597716283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.441 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds