Wall clock time and date at job start Mon Mar 30 2020 04:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00244 * 2 1 4 4 C 1.53000 * 109.47187 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46837 * 65.00192 * 4 3 2 6 6 C 1.37094 * 119.99503 * 269.99567 * 5 4 3 7 7 H 1.08003 * 119.99469 * 142.80132 * 6 5 4 8 8 C 1.38950 * 120.00277 * 322.79510 * 6 5 4 9 9 N 1.31408 * 120.00351 * 339.75835 * 8 6 5 10 10 Si 1.86805 * 119.99787 * 159.75201 * 8 6 5 11 11 H 1.48495 * 109.47056 * 60.00160 * 10 8 6 12 12 H 1.48502 * 109.46883 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.46995 * 300.00003 * 10 8 6 14 14 C 1.34775 * 119.99912 * 90.00207 * 5 4 3 15 15 O 1.21285 * 120.00228 * 355.20537 * 14 5 4 16 16 C 1.50701 * 119.99739 * 175.20815 * 14 5 4 17 17 H 1.09002 * 110.01574 * 333.38729 * 16 14 5 18 18 C 1.54264 * 110.03160 * 94.77751 * 16 14 5 19 19 C 1.54898 * 104.19248 * 142.89518 * 18 16 14 20 20 C 1.54886 * 102.74617 * 322.05785 * 19 18 16 21 21 H 1.09001 * 110.49045 * 279.26157 * 20 19 18 22 22 O 1.42901 * 110.48245 * 156.75456 * 20 19 18 23 23 C 1.42904 * 113.99963 * 91.45514 * 22 20 19 24 24 C 1.53873 * 110.02980 * 211.94673 * 16 14 5 25 25 H 1.09005 * 109.46956 * 60.00479 * 1 2 3 26 26 H 1.08998 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47123 * 300.00250 * 1 2 3 28 28 H 1.08998 * 109.47051 * 59.99199 * 3 2 1 29 29 H 1.09005 * 109.46814 * 299.99882 * 3 2 1 30 30 H 1.09003 * 109.46800 * 184.99926 * 4 3 2 31 31 H 1.08994 * 109.47067 * 305.00121 * 4 3 2 32 32 H 0.97002 * 120.00104 * 185.03887 * 9 8 6 33 33 H 1.08997 * 110.48970 * 261.56744 * 18 16 14 34 34 H 1.09000 * 110.48657 * 24.08571 * 18 16 14 35 35 H 1.08997 * 110.75630 * 80.37406 * 19 18 16 36 36 H 1.09000 * 110.75623 * 203.74258 * 19 18 16 37 37 H 1.08998 * 109.47322 * 60.00022 * 23 22 20 38 38 H 1.09007 * 109.46852 * 179.97438 * 23 22 20 39 39 H 1.08997 * 109.46979 * 299.99255 * 23 22 20 40 40 H 1.08996 * 110.03409 * 359.97438 * 24 16 14 41 41 H 1.09003 * 110.03152 * 121.43180 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 4.0979 -0.7991 -1.3345 7 1 3.8290 -1.3101 -2.2472 8 6 4.5670 -1.5230 -0.2452 9 7 5.2566 -0.9199 0.6968 10 14 4.2169 -3.3537 -0.1197 11 1 4.8023 -4.0511 -1.2928 12 1 4.8208 -3.8888 1.1270 13 1 2.7489 -3.5763 -0.0933 14 6 4.2634 1.3329 -2.3200 15 8 4.0736 2.5299 -2.2745 16 6 4.8198 0.7053 -3.5721 17 1 5.3540 -0.2120 -3.3240 18 6 3.6775 0.4001 -4.5628 19 6 4.2897 0.7024 -5.9532 20 6 5.1636 1.9511 -5.6776 21 1 4.5498 2.8517 -5.6673 22 8 6.1980 2.0636 -6.6571 23 6 5.8403 2.8552 -7.7918 24 6 5.7647 1.6915 -4.2808 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.9785 2.1765 0.0902 31 1 3.8508 0.5685 0.8426 32 1 5.6463 -1.4369 1.4192 33 1 3.3834 -0.6473 -4.4951 34 1 2.8227 1.0486 -4.3710 35 1 4.9036 -0.1311 -6.2945 36 1 3.5082 0.9302 -6.6781 37 1 5.5940 3.8659 -7.4667 38 1 6.6784 2.8919 -8.4879 39 1 4.9761 2.4117 -8.2863 40 1 5.8205 2.6241 -3.7195 41 1 6.7580 1.2529 -4.3774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:46 Heat of formation + Delta-G solvation = -128.916770 kcal Electronic energy + Delta-G solvation = -22240.102104 eV Core-core repulsion = 18927.352122 eV Total energy + Delta-G solvation = -3312.749982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.33615 -37.99842 -36.93357 -35.26209 -34.49419 -31.51905 -29.63181 -28.37507 -27.79227 -25.92837 -25.66845 -24.61431 -22.34040 -20.47489 -20.20440 -18.72247 -16.99093 -16.62951 -16.05440 -15.44047 -15.31605 -15.28811 -14.72282 -14.44761 -14.31256 -14.07917 -13.40704 -13.20408 -13.11605 -12.70405 -12.10477 -11.93738 -11.69707 -11.29546 -11.18677 -11.11029 -11.04348 -10.95600 -10.83193 -10.56563 -10.54117 -10.37189 -10.29986 -10.06575 -9.83676 -9.27609 -9.06860 -8.92242 -8.31221 -7.41590 -6.27795 -3.93794 3.20579 3.28441 3.33540 3.83378 4.05732 4.20730 4.55124 4.79379 5.00340 5.03648 5.17827 5.36650 5.42094 5.49461 5.65786 5.68786 5.71421 5.75557 5.94958 5.98207 6.02492 6.03944 6.09395 6.16327 6.20461 6.23896 6.38833 6.47639 6.49980 6.55191 6.77985 6.81306 6.98747 7.32765 7.46543 7.56539 7.87234 8.06259 8.45591 9.19112 9.59697 10.01017 10.75301 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.005928 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.748413 B = 4721.854141 C = 5298.991573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.054 3.946 4 C 0.110 3.890 5 N -0.427 5.427 6 C -0.321 4.321 7 H 0.086 0.914 8 C 0.051 3.949 9 N -0.866 5.866 10 Si 0.915 3.085 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.473 3.527 15 O -0.613 6.613 16 C -0.094 4.094 17 H 0.101 0.899 18 C -0.102 4.102 19 C -0.142 4.142 20 C 0.085 3.915 21 H 0.066 0.934 22 O -0.385 6.385 23 C 0.032 3.968 24 C -0.104 4.104 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.269 0.731 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.082 0.918 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.790 1.961 -7.923 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.014 4.014 5 N -0.143 5.143 6 C -0.449 4.449 7 H 0.104 0.896 8 C -0.154 4.154 9 N -0.503 5.503 10 Si 0.742 3.258 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.196 1.196 14 C 0.262 3.738 15 O -0.501 6.501 16 C -0.115 4.115 17 H 0.119 0.881 18 C -0.140 4.140 19 C -0.180 4.180 20 C 0.027 3.973 21 H 0.084 0.916 22 O -0.304 6.304 23 C -0.065 4.065 24 C -0.142 4.142 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.550 2.228 -7.604 8.683 hybrid contribution -0.754 -0.631 0.121 0.990 sum -4.304 1.597 -7.483 8.780 Atomic orbital electron populations 1.22637 0.83639 1.01648 0.98727 1.88163 1.17158 1.27652 1.94993 1.23010 0.96654 0.84289 0.98375 1.21511 0.89256 0.98934 0.91668 1.43336 1.55660 1.06238 1.09072 1.19209 1.43935 0.80622 1.01104 0.89643 1.25277 0.94242 0.99838 0.96075 1.69789 1.30147 1.36725 1.13675 0.86196 0.79179 0.82867 0.77541 1.20049 1.21185 1.19619 1.20322 0.80997 0.86171 0.86267 1.90480 1.59574 1.15615 1.84397 1.21562 0.96552 0.99896 0.93525 0.88067 1.22104 0.97468 1.01705 0.92765 1.22970 0.98843 0.98726 0.97494 1.23106 0.88419 0.97193 0.88538 0.91628 1.87904 1.39970 1.71583 1.30932 1.22711 1.00595 0.94270 0.88901 1.22077 0.98700 1.00700 0.92752 0.95084 0.90509 0.95251 0.94522 0.94305 0.91340 0.86647 0.92040 0.90998 0.91760 0.90595 0.92124 0.94290 0.90147 0.94401 0.89978 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.84 10.18 -35.23 -0.36 -8.20 16 3 C 0.05 1.15 6.28 37.16 0.23 1.39 16 4 C 0.11 2.66 5.39 -4.04 -0.02 2.64 16 5 N -0.43 -10.72 2.50 -114.81 -0.29 -11.01 16 6 C -0.32 -8.14 7.59 -14.93 -0.11 -8.25 16 7 H 0.09 2.10 7.22 -52.48 -0.38 1.72 16 8 C 0.05 1.30 4.99 -17.47 -0.09 1.22 16 9 N -0.87 -22.99 11.36 55.50 0.63 -22.36 16 10 Si 0.92 20.09 29.60 -169.99 -5.03 15.06 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 14 C 0.47 11.47 6.51 -10.99 -0.07 11.40 16 15 O -0.61 -15.95 15.41 5.55 0.09 -15.86 16 16 C -0.09 -1.92 2.50 -90.66 -0.23 -2.15 16 17 H 0.10 2.15 6.88 -51.93 -0.36 1.80 16 18 C -0.10 -1.80 6.30 -25.07 -0.16 -1.96 16 19 C -0.14 -2.15 6.62 -24.74 -0.16 -2.31 16 20 C 0.08 1.38 3.32 -25.08 -0.08 1.30 16 21 H 0.07 1.06 7.86 -51.93 -0.41 0.65 16 22 O -0.38 -6.00 10.42 -35.23 -0.37 -6.36 16 23 C 0.03 0.37 10.87 101.05 1.10 1.47 16 24 C -0.10 -1.96 6.08 -25.62 -0.16 -2.12 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.66 7.49 -51.93 -0.39 1.27 16 31 H 0.12 2.99 5.45 -51.93 -0.28 2.71 16 32 H 0.27 6.81 8.32 -40.82 -0.34 6.47 16 33 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 34 H 0.06 1.19 7.85 -51.93 -0.41 0.78 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.04 0.42 8.10 -51.93 -0.42 0.00 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 1.69 6.87 -51.93 -0.36 1.33 16 41 H 0.07 1.30 8.07 -51.93 -0.42 0.88 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -29.51 333.72 -5.72 -35.23 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.78 Total: 4.24 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 1.36 Total: 4.24 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.34 Total: -33.37 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.64 Total: -30.42 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.51 -5.72 -35.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.686 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds