Wall clock time and date at job start Mon Mar 30 2020 04:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00244 * 2 1 4 4 C 1.53000 * 109.47187 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46837 * 65.00192 * 4 3 2 6 6 C 1.37094 * 119.99503 * 269.99567 * 5 4 3 7 7 H 1.08003 * 119.99469 * 142.80132 * 6 5 4 8 8 C 1.38950 * 120.00277 * 322.79510 * 6 5 4 9 9 N 1.31408 * 120.00351 * 339.75835 * 8 6 5 10 10 Si 1.86805 * 119.99787 * 159.75201 * 8 6 5 11 11 H 1.48495 * 109.47056 * 60.00160 * 10 8 6 12 12 H 1.48502 * 109.46883 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.46995 * 300.00003 * 10 8 6 14 14 C 1.34775 * 119.99912 * 90.00207 * 5 4 3 15 15 O 1.21285 * 120.00228 * 355.20537 * 14 5 4 16 16 C 1.50701 * 119.99739 * 175.20815 * 14 5 4 17 17 H 1.09002 * 110.01574 * 333.38729 * 16 14 5 18 18 C 1.54264 * 110.03160 * 94.77751 * 16 14 5 19 19 C 1.54898 * 104.19248 * 142.89518 * 18 16 14 20 20 C 1.54886 * 102.74617 * 322.05785 * 19 18 16 21 21 H 1.09001 * 110.49045 * 279.26157 * 20 19 18 22 22 O 1.42901 * 110.48245 * 156.75456 * 20 19 18 23 23 C 1.42904 * 113.99963 * 91.45514 * 22 20 19 24 24 C 1.53873 * 110.02980 * 211.94673 * 16 14 5 25 25 H 1.09005 * 109.46956 * 60.00479 * 1 2 3 26 26 H 1.08998 * 109.46910 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47123 * 300.00250 * 1 2 3 28 28 H 1.08998 * 109.47051 * 59.99199 * 3 2 1 29 29 H 1.09005 * 109.46814 * 299.99882 * 3 2 1 30 30 H 1.09003 * 109.46800 * 184.99926 * 4 3 2 31 31 H 1.08994 * 109.47067 * 305.00121 * 4 3 2 32 32 H 0.97002 * 120.00104 * 185.03887 * 9 8 6 33 33 H 1.08997 * 110.48970 * 261.56744 * 18 16 14 34 34 H 1.09000 * 110.48657 * 24.08571 * 18 16 14 35 35 H 1.08997 * 110.75630 * 80.37406 * 19 18 16 36 36 H 1.09000 * 110.75623 * 203.74258 * 19 18 16 37 37 H 1.08998 * 109.47322 * 60.00022 * 23 22 20 38 38 H 1.09007 * 109.46852 * 179.97438 * 23 22 20 39 39 H 1.08997 * 109.46979 * 299.99255 * 23 22 20 40 40 H 1.08996 * 110.03409 * 359.97438 * 24 16 14 41 41 H 1.09003 * 110.03152 * 121.43180 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 4.0979 -0.7991 -1.3345 7 1 3.8290 -1.3101 -2.2472 8 6 4.5670 -1.5230 -0.2452 9 7 5.2566 -0.9199 0.6968 10 14 4.2169 -3.3537 -0.1197 11 1 4.8023 -4.0511 -1.2928 12 1 4.8208 -3.8888 1.1270 13 1 2.7489 -3.5763 -0.0933 14 6 4.2634 1.3329 -2.3200 15 8 4.0736 2.5299 -2.2745 16 6 4.8198 0.7053 -3.5721 17 1 5.3540 -0.2120 -3.3240 18 6 3.6775 0.4001 -4.5628 19 6 4.2897 0.7024 -5.9532 20 6 5.1636 1.9511 -5.6776 21 1 4.5498 2.8517 -5.6673 22 8 6.1980 2.0636 -6.6571 23 6 5.8403 2.8552 -7.7918 24 6 5.7647 1.6915 -4.2808 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.9785 2.1765 0.0902 31 1 3.8508 0.5685 0.8426 32 1 5.6463 -1.4369 1.4192 33 1 3.3834 -0.6473 -4.4951 34 1 2.8227 1.0486 -4.3710 35 1 4.9036 -0.1311 -6.2945 36 1 3.5082 0.9302 -6.6781 37 1 5.5940 3.8659 -7.4667 38 1 6.6784 2.8919 -8.4879 39 1 4.9761 2.4117 -8.2863 40 1 5.8205 2.6241 -3.7195 41 1 6.7580 1.2529 -4.3774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597755486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:46 Heat of formation + Delta-G solvation = -147.591659 kcal Electronic energy + Delta-G solvation = -22240.911908 eV Core-core repulsion = 18927.352122 eV Total energy + Delta-G solvation = -3313.559786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02367 -39.44856 -38.50849 -36.77116 -36.30759 -33.46950 -31.33020 -29.76192 -29.18577 -27.28201 -26.92615 -26.44687 -24.04327 -21.98518 -21.67292 -20.56883 -18.64414 -18.27442 -17.53131 -17.10449 -16.91255 -16.70760 -16.21206 -16.04442 -15.76853 -15.63950 -14.94721 -14.87777 -14.45026 -14.22521 -13.59202 -13.41936 -13.39535 -12.92180 -12.83732 -12.68502 -12.51616 -12.37292 -12.31553 -12.18538 -12.09930 -12.06286 -11.79669 -11.61592 -11.40171 -10.94814 -10.52526 -10.43909 -10.21784 -9.37983 -8.21668 -5.93169 1.45412 1.52978 1.59654 2.02960 2.38364 2.85861 2.95280 3.05351 3.21840 3.65108 3.74341 4.03819 4.25116 4.28107 4.39877 4.50506 4.52759 4.53419 4.54400 4.56265 4.61744 4.63055 4.69622 4.72992 4.75656 4.82370 4.88724 4.95861 5.00096 5.05845 5.19665 5.29058 5.38108 5.41102 5.59911 6.05887 6.33533 6.42778 6.49418 7.23043 7.66935 8.08022 8.81963 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.005928 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.748413 B = 4721.854141 C = 5298.991573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.067 3.933 4 C 0.107 3.893 5 N -0.437 5.437 6 C -0.329 4.329 7 H 0.091 0.909 8 C 0.011 3.989 9 N -0.897 5.897 10 Si 0.976 3.024 11 H -0.263 1.263 12 H -0.287 1.287 13 H -0.271 1.271 14 C 0.462 3.538 15 O -0.638 6.638 16 C -0.092 4.092 17 H 0.090 0.910 18 C -0.097 4.097 19 C -0.129 4.129 20 C 0.092 3.908 21 H 0.066 0.934 22 O -0.402 6.402 23 C 0.024 3.976 24 C -0.104 4.104 25 H 0.039 0.961 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.270 0.730 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 0.945 -9.547 10.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.010 4.010 4 C -0.017 4.017 5 N -0.154 5.154 6 C -0.457 4.457 7 H 0.109 0.891 8 C -0.191 4.191 9 N -0.535 5.535 10 Si 0.801 3.199 11 H -0.187 1.187 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.252 3.748 15 O -0.528 6.528 16 C -0.113 4.113 17 H 0.108 0.892 18 C -0.135 4.135 19 C -0.166 4.166 20 C 0.034 3.966 21 H 0.084 0.916 22 O -0.322 6.322 23 C -0.072 4.072 24 C -0.142 4.142 25 H 0.058 0.942 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.593 1.212 -9.244 10.393 hybrid contribution -0.429 -0.238 0.635 0.803 sum -5.022 0.974 -8.609 10.014 Atomic orbital electron populations 1.22879 0.80816 1.03231 1.00215 1.88089 1.20282 1.27642 1.95269 1.22764 0.94487 0.84622 0.99163 1.21458 0.91630 0.97647 0.91004 1.43560 1.55846 1.06527 1.09443 1.19438 1.43886 0.80799 1.01531 0.89100 1.26026 0.93797 1.03692 0.95613 1.69901 1.31144 1.38199 1.14286 0.85253 0.78719 0.78209 0.77761 1.18716 1.21219 1.19671 1.20999 0.80516 0.86019 0.87238 1.90446 1.60616 1.16680 1.85035 1.21556 0.97730 0.99359 0.92682 0.89172 1.22074 0.96020 1.01902 0.93527 1.22902 0.99193 0.98248 0.96274 1.22914 0.88410 0.97873 0.87376 0.91638 1.87867 1.40011 1.72463 1.31833 1.22977 1.02249 0.94104 0.87906 1.22010 0.98761 0.98996 0.94396 0.94188 0.88945 0.93084 0.91850 0.95174 0.92649 0.88462 0.92052 0.90183 0.92856 0.89711 0.89357 0.93820 0.88107 0.92840 0.92476 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 11.01 113.37 1.25 2.01 16 2 O -0.39 -16.78 10.18 -148.98 -1.52 -18.29 16 3 C 0.07 2.85 6.28 71.98 0.45 3.30 16 4 C 0.11 5.29 5.39 86.38 0.47 5.76 16 5 N -0.44 -22.48 2.50 -635.53 -1.59 -24.07 16 6 C -0.33 -16.79 7.59 84.04 0.64 -16.15 16 7 H 0.09 4.44 7.22 -2.91 -0.02 4.42 16 8 C 0.01 0.57 4.99 84.93 0.42 0.99 16 9 N -0.90 -48.44 11.36 21.66 0.25 -48.19 16 10 Si 0.98 40.81 29.60 68.60 2.03 42.84 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 14 C 0.46 22.94 6.51 87.66 0.57 23.51 16 15 O -0.64 -34.24 15.41 -3.05 -0.05 -34.28 16 16 C -0.09 -3.78 2.50 -10.82 -0.03 -3.81 16 17 H 0.09 3.88 6.88 -2.39 -0.02 3.86 16 18 C -0.10 -3.30 6.30 31.67 0.20 -3.10 16 19 C -0.13 -3.54 6.62 31.89 0.21 -3.33 16 20 C 0.09 2.86 3.32 31.67 0.10 2.97 16 21 H 0.07 2.03 7.86 -2.39 -0.02 2.01 16 22 O -0.40 -11.73 10.42 -148.98 -1.55 -13.28 16 23 C 0.02 0.48 10.87 113.37 1.23 1.71 16 24 C -0.10 -3.92 6.08 31.32 0.19 -3.73 16 25 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.06 2.80 7.49 -2.39 -0.02 2.79 16 31 H 0.10 5.20 5.45 -2.39 -0.01 5.19 16 32 H 0.27 13.85 8.32 -92.71 -0.77 13.08 16 33 H 0.08 2.57 8.09 -2.39 -0.02 2.55 16 34 H 0.05 1.93 7.85 -2.39 -0.02 1.91 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 38 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 2.42 6.87 -2.39 -0.02 2.41 16 41 H 0.07 2.72 8.07 -2.39 -0.02 2.70 16 Total: -1.00 -63.99 333.72 4.27 -59.71 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.99 Total: 25.43 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 5.71 Total: 10.13 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.34 Total: -72.26 kcal Atomic # 8 Polarization: -62.74 SS G_CDS: -3.12 Total: -65.86 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -63.99 4.27 -59.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.879 kcal (2) G-P(sol) polarization free energy of solvation -63.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds