Wall clock time and date at job start Mon Mar 30 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00481 * 2 1 4 4 H 1.09000 * 109.47041 * 34.50937 * 3 2 1 5 5 C 1.52994 * 109.47429 * 154.51495 * 3 2 1 6 6 N 1.46506 * 109.46750 * 294.20930 * 5 3 2 7 7 C 1.34781 * 119.99529 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00092 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99587 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47057 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47057 * 180.02562 * 10 9 7 12 12 H 1.07991 * 120.00023 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99610 * 179.72460 * 11 10 9 14 14 N 1.31509 * 120.00040 * 0.27248 * 13 11 10 15 15 Si 1.86797 * 119.99601 * 180.27378 * 13 11 10 16 16 H 1.48495 * 109.47552 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47168 * 120.00185 * 15 13 11 18 18 H 1.48502 * 109.47292 * 239.99818 * 15 13 11 19 19 C 1.52995 * 109.46862 * 274.51633 * 3 2 1 20 20 H 1.08998 * 110.44270 * 58.69448 * 19 3 2 21 21 C 1.54814 * 110.48916 * 296.14227 * 19 3 2 22 22 C 1.55226 * 101.99189 * 220.52017 * 21 19 3 23 23 O 1.44382 * 103.56199 * 36.88185 * 22 21 19 24 24 C 1.43748 * 106.97701 * 320.01184 * 23 22 21 25 25 H 1.08999 * 109.47466 * 175.05314 * 1 2 3 26 26 H 1.08999 * 109.46898 * 295.06417 * 1 2 3 27 27 H 1.09003 * 109.46855 * 55.05835 * 1 2 3 28 28 H 1.08994 * 109.47323 * 174.20973 * 5 3 2 29 29 H 1.08998 * 109.47295 * 54.20889 * 5 3 2 30 30 H 0.96993 * 120.00292 * 0.02562 * 6 5 3 31 31 H 1.09002 * 109.47103 * 60.00076 * 9 7 6 32 32 H 1.08998 * 109.47041 * 299.99877 * 9 7 6 33 33 H 1.08994 * 109.47202 * 59.99821 * 10 9 7 34 34 H 1.09007 * 109.47038 * 299.99633 * 10 9 7 35 35 H 0.97001 * 119.99771 * 179.97438 * 14 13 11 36 36 H 1.08997 * 110.90643 * 338.65234 * 21 19 3 37 37 H 1.09007 * 110.90505 * 102.24936 * 21 19 3 38 38 H 1.08999 * 110.52178 * 278.38754 * 22 21 19 39 39 H 1.08993 * 110.64161 * 155.43607 * 22 21 19 40 40 H 1.08999 * 109.87613 * 267.08987 * 24 23 22 41 41 H 1.08998 * 109.87951 * 145.94156 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3846 1.9818 0.5822 5 6 3.4073 1.2416 0.6206 6 7 3.2964 0.8846 2.0372 7 6 4.4071 0.7699 2.7921 8 8 5.4981 0.9617 2.2987 9 6 4.2930 0.4021 4.2491 10 6 5.6900 0.3384 4.8699 11 6 5.5760 -0.0300 6.3267 12 1 4.6045 -0.2011 6.7659 13 6 6.7126 -0.1535 7.0974 14 7 7.8957 0.0554 6.5626 15 14 6.5718 -0.6177 8.9013 16 1 5.1410 -0.7960 9.2564 17 1 7.3046 -1.8862 9.1447 18 1 7.1580 0.4607 9.7372 19 6 2.1140 1.8174 -1.4380 20 1 1.1289 1.8473 -1.9034 21 6 3.0759 0.9273 -2.2621 22 6 3.8486 1.9793 -3.1023 23 8 4.0014 3.0916 -2.1946 24 6 2.7671 3.2129 -1.4678 25 1 -0.3634 -1.0238 -0.0886 26 1 -0.3633 0.4354 0.9309 27 1 -0.3633 0.5886 -0.8424 28 1 3.8909 2.2140 0.5278 29 1 4.0014 0.4894 0.1018 30 1 2.4238 0.7309 2.4317 31 1 3.8101 -0.5707 4.3415 32 1 3.6983 1.1538 4.7681 33 1 6.1734 1.3110 4.7774 34 1 6.2844 -0.4136 4.3507 35 1 8.6953 -0.0312 7.1049 36 1 3.7535 0.3779 -1.6086 37 1 2.5197 0.2452 -2.9053 38 1 3.2662 2.2735 -3.9754 39 1 4.8222 1.5918 -3.4019 40 1 2.1081 3.9198 -1.9719 41 1 2.9674 3.5502 -0.4509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597877400.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:57 Heat of formation + Delta-G solvation = -140.706595 kcal Electronic energy + Delta-G solvation = -21151.289924 eV Core-core repulsion = 17838.028697 eV Total energy + Delta-G solvation = -3313.261227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38966 -38.91901 -37.94337 -34.56679 -33.39331 -32.88416 -30.98367 -30.04791 -28.24668 -26.60050 -25.35512 -23.73739 -22.89943 -21.48075 -20.31874 -19.42206 -17.40086 -16.92245 -16.72048 -16.38427 -15.75445 -15.62502 -15.21267 -14.92586 -14.81179 -14.52853 -14.34164 -13.75161 -13.39598 -12.88995 -12.79055 -12.36059 -12.12696 -12.06581 -11.87473 -11.65690 -11.54872 -11.32234 -11.10557 -10.91618 -10.71893 -10.54844 -10.05740 -9.90844 -9.80289 -9.61560 -9.11746 -8.94537 -8.69086 -8.28347 -5.92334 -3.96507 3.30136 3.35022 3.37716 3.41638 3.44939 3.52310 3.73276 4.24471 4.25923 4.50564 4.55731 4.73202 4.80828 4.89953 4.93040 4.99573 5.08659 5.25177 5.34929 5.40979 5.42550 5.45332 5.51416 5.55258 5.58612 5.71117 5.86082 6.05536 6.28631 6.30700 6.60300 6.76252 6.84335 6.95243 7.79127 7.91832 7.95607 8.11999 8.43283 8.85811 9.12611 9.66780 11.18691 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029579 B = 0.003379 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.383800 B = 8284.883151 C = 8936.919831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.087 3.913 4 H 0.070 0.930 5 C 0.120 3.880 6 N -0.741 5.741 7 C 0.509 3.491 8 O -0.534 6.534 9 C -0.129 4.129 10 C 0.036 3.964 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.889 5.889 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.144 4.144 20 H 0.087 0.913 21 C -0.148 4.148 22 C 0.044 3.956 23 O -0.372 6.372 24 C 0.049 3.951 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.397 0.603 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.260 0.740 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.961 3.304 -18.684 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.292 6.292 3 C 0.029 3.971 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.395 5.395 7 C 0.297 3.703 8 O -0.409 6.409 9 C -0.169 4.169 10 C -0.001 4.001 11 C -0.564 4.564 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.164 4.164 20 H 0.106 0.894 21 C -0.185 4.185 22 C -0.032 4.032 23 O -0.291 6.291 24 C -0.028 4.028 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.230 0.770 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.654 3.415 -18.978 25.479 hybrid contribution -1.010 -0.258 1.042 1.474 sum -17.664 3.157 -17.936 25.371 Atomic orbital electron populations 1.22816 0.81180 1.02891 0.99967 1.88029 1.19496 1.26771 1.94881 1.22342 0.95062 0.85344 0.94367 0.91198 1.21462 0.94420 1.02174 0.82297 1.46102 1.09856 1.73773 1.09772 1.21551 0.83330 0.75566 0.89817 1.90675 1.26976 1.48831 1.74440 1.21854 1.04480 1.01585 0.88996 1.18908 0.88460 0.98491 0.94290 1.21267 0.92707 1.47485 0.94946 0.92579 1.25031 0.95420 0.95522 0.98474 1.70012 0.97537 1.49309 1.35957 0.86539 0.78037 0.78076 0.85316 1.19776 1.21036 1.21046 1.23030 1.00712 0.95812 0.96815 0.89436 1.23268 0.98294 0.98090 0.98854 1.23641 1.01136 0.85952 0.92480 1.88934 1.34587 1.51389 1.54157 1.23227 0.86321 0.95325 0.97883 0.89493 0.93818 0.94184 0.89911 0.90654 0.76990 0.90273 0.90350 0.95802 0.95796 0.93033 0.89224 0.90092 0.92383 0.88715 0.92148 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.80 101.05 1.09 1.28 16 2 O -0.37 -3.74 10.10 -35.23 -0.36 -4.10 16 3 C 0.09 0.82 1.86 -26.74 -0.05 0.77 16 4 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 5 C 0.12 1.59 4.73 -4.04 -0.02 1.57 16 6 N -0.74 -10.97 5.51 -60.30 -0.33 -11.30 16 7 C 0.51 10.21 7.83 -10.98 -0.09 10.12 16 8 O -0.53 -13.12 15.98 5.56 0.09 -13.03 16 9 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 10 C 0.04 0.99 4.26 -27.88 -0.12 0.88 16 11 C -0.53 -15.17 9.11 -34.44 -0.31 -15.49 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 15 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 C -0.14 -1.17 3.03 -89.09 -0.27 -1.44 16 20 H 0.09 0.57 7.52 -51.93 -0.39 0.18 16 21 C -0.15 -1.29 6.30 -24.60 -0.15 -1.45 16 22 C 0.04 0.39 7.72 38.34 0.30 0.69 16 23 O -0.37 -4.36 11.52 -35.23 -0.41 -4.77 16 24 C 0.05 0.45 6.70 37.73 0.25 0.70 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.04 0.22 7.46 -51.93 -0.39 -0.17 16 28 H 0.08 1.16 6.33 -51.93 -0.33 0.84 16 29 H 0.08 1.13 6.21 -51.93 -0.32 0.80 16 30 H 0.40 4.75 8.47 -40.82 -0.35 4.40 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.09 0.96 5.72 -51.93 -0.30 0.66 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.83 6.43 -51.93 -0.33 0.49 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -35.66 334.12 -6.46 -42.12 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.58 Total: -0.12 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 0.37 Total: -3.64 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.40 Total: -38.40 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.67 Total: -21.90 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.66 -6.46 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597877400.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.586 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds