Wall clock time and date at job start Mon Mar 30 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00481 * 2 1 4 4 H 1.09000 * 109.47041 * 34.50937 * 3 2 1 5 5 C 1.52994 * 109.47429 * 154.51495 * 3 2 1 6 6 N 1.46506 * 109.46750 * 294.20930 * 5 3 2 7 7 C 1.34781 * 119.99529 * 180.02562 * 6 5 3 8 8 O 1.21274 * 120.00092 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99587 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47057 * 179.97438 * 9 7 6 11 11 C 1.50701 * 109.47057 * 180.02562 * 10 9 7 12 12 H 1.07991 * 120.00023 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99610 * 179.72460 * 11 10 9 14 14 N 1.31509 * 120.00040 * 0.27248 * 13 11 10 15 15 Si 1.86797 * 119.99601 * 180.27378 * 13 11 10 16 16 H 1.48495 * 109.47552 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47168 * 120.00185 * 15 13 11 18 18 H 1.48502 * 109.47292 * 239.99818 * 15 13 11 19 19 C 1.52995 * 109.46862 * 274.51633 * 3 2 1 20 20 H 1.08998 * 110.44270 * 58.69448 * 19 3 2 21 21 C 1.54814 * 110.48916 * 296.14227 * 19 3 2 22 22 C 1.55226 * 101.99189 * 220.52017 * 21 19 3 23 23 O 1.44382 * 103.56199 * 36.88185 * 22 21 19 24 24 C 1.43748 * 106.97701 * 320.01184 * 23 22 21 25 25 H 1.08999 * 109.47466 * 175.05314 * 1 2 3 26 26 H 1.08999 * 109.46898 * 295.06417 * 1 2 3 27 27 H 1.09003 * 109.46855 * 55.05835 * 1 2 3 28 28 H 1.08994 * 109.47323 * 174.20973 * 5 3 2 29 29 H 1.08998 * 109.47295 * 54.20889 * 5 3 2 30 30 H 0.96993 * 120.00292 * 0.02562 * 6 5 3 31 31 H 1.09002 * 109.47103 * 60.00076 * 9 7 6 32 32 H 1.08998 * 109.47041 * 299.99877 * 9 7 6 33 33 H 1.08994 * 109.47202 * 59.99821 * 10 9 7 34 34 H 1.09007 * 109.47038 * 299.99633 * 10 9 7 35 35 H 0.97001 * 119.99771 * 179.97438 * 14 13 11 36 36 H 1.08997 * 110.90643 * 338.65234 * 21 19 3 37 37 H 1.09007 * 110.90505 * 102.24936 * 21 19 3 38 38 H 1.08999 * 110.52178 * 278.38754 * 22 21 19 39 39 H 1.08993 * 110.64161 * 155.43607 * 22 21 19 40 40 H 1.08999 * 109.87613 * 267.08987 * 24 23 22 41 41 H 1.08998 * 109.87951 * 145.94156 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3846 1.9818 0.5822 5 6 3.4073 1.2416 0.6206 6 7 3.2964 0.8846 2.0372 7 6 4.4071 0.7699 2.7921 8 8 5.4981 0.9617 2.2987 9 6 4.2930 0.4021 4.2491 10 6 5.6900 0.3384 4.8699 11 6 5.5760 -0.0300 6.3267 12 1 4.6045 -0.2011 6.7659 13 6 6.7126 -0.1535 7.0974 14 7 7.8957 0.0554 6.5626 15 14 6.5718 -0.6177 8.9013 16 1 5.1410 -0.7960 9.2564 17 1 7.3046 -1.8862 9.1447 18 1 7.1580 0.4607 9.7372 19 6 2.1140 1.8174 -1.4380 20 1 1.1289 1.8473 -1.9034 21 6 3.0759 0.9273 -2.2621 22 6 3.8486 1.9793 -3.1023 23 8 4.0014 3.0916 -2.1946 24 6 2.7671 3.2129 -1.4678 25 1 -0.3634 -1.0238 -0.0886 26 1 -0.3633 0.4354 0.9309 27 1 -0.3633 0.5886 -0.8424 28 1 3.8909 2.2140 0.5278 29 1 4.0014 0.4894 0.1018 30 1 2.4238 0.7309 2.4317 31 1 3.8101 -0.5707 4.3415 32 1 3.6983 1.1538 4.7681 33 1 6.1734 1.3110 4.7774 34 1 6.2844 -0.4136 4.3507 35 1 8.6953 -0.0312 7.1049 36 1 3.7535 0.3779 -1.6086 37 1 2.5197 0.2452 -2.9053 38 1 3.2662 2.2735 -3.9754 39 1 4.8222 1.5918 -3.4019 40 1 2.1081 3.9198 -1.9719 41 1 2.9674 3.5502 -0.4509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597877400.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:57 Heat of formation + Delta-G solvation = -168.425385 kcal Electronic energy + Delta-G solvation = -21152.491901 eV Core-core repulsion = 17838.028697 eV Total energy + Delta-G solvation = -3314.463204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26260 -40.35733 -38.73243 -35.85760 -35.49809 -33.83864 -32.94516 -30.86068 -29.23748 -27.77061 -26.75558 -24.76406 -23.60698 -23.36112 -21.43359 -20.68811 -18.81831 -18.20659 -17.60884 -17.55106 -17.02482 -16.65109 -16.47348 -16.36137 -16.06934 -15.60957 -15.37461 -14.90171 -14.60137 -14.26911 -14.04355 -13.90694 -13.33564 -13.23135 -13.08883 -12.82994 -12.66003 -12.43590 -12.34195 -12.20469 -11.97842 -11.92323 -11.63596 -11.45858 -11.28065 -10.84478 -10.71870 -10.57486 -10.42418 -10.05374 -8.17300 -6.31572 1.42673 1.44472 1.57788 1.71538 2.21976 2.45235 2.66129 3.02461 3.15652 3.50659 3.58716 3.78795 4.02448 4.08395 4.09914 4.25595 4.26491 4.45236 4.47753 4.51327 4.57925 4.59739 4.67336 4.76194 4.80905 4.84146 4.87879 4.95581 5.01362 5.09368 5.21044 5.43943 5.52122 5.63594 5.86189 5.92238 6.18200 6.20615 6.59963 6.87138 7.34650 7.38881 8.95753 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029579 B = 0.003379 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.383800 B = 8284.883151 C = 8936.919831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.396 6.396 3 C 0.098 3.902 4 H 0.094 0.906 5 C 0.119 3.881 6 N -0.714 5.714 7 C 0.509 3.491 8 O -0.591 6.591 9 C -0.118 4.118 10 C 0.041 3.959 11 C -0.542 4.542 12 H 0.077 0.923 13 C -0.009 4.009 14 N -0.938 5.938 15 Si 0.976 3.024 16 H -0.252 1.252 17 H -0.281 1.281 18 H -0.280 1.280 19 C -0.135 4.135 20 H 0.117 0.883 21 C -0.148 4.148 22 C 0.041 3.959 23 O -0.407 6.407 24 C 0.044 3.956 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.415 0.585 31 H 0.103 0.897 32 H 0.107 0.893 33 H -0.018 1.018 34 H -0.020 1.020 35 H 0.263 0.737 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.524 3.152 -18.299 28.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.315 6.315 3 C 0.039 3.961 4 H 0.112 0.888 5 C -0.005 4.005 6 N -0.367 5.367 7 C 0.297 3.703 8 O -0.471 6.471 9 C -0.158 4.158 10 C 0.003 3.997 11 C -0.580 4.580 12 H 0.095 0.905 13 C -0.206 4.206 14 N -0.579 5.579 15 Si 0.800 3.200 16 H -0.175 1.175 17 H -0.207 1.207 18 H -0.206 1.206 19 C -0.154 4.154 20 H 0.135 0.865 21 C -0.185 4.185 22 C -0.035 4.035 23 O -0.327 6.327 24 C -0.033 4.033 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.252 0.748 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.001 0.999 34 H -0.001 1.001 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.308 3.258 -18.607 27.736 hybrid contribution 0.083 -0.214 0.843 0.873 sum -20.226 3.045 -17.764 27.091 Atomic orbital electron populations 1.23025 0.79243 1.03861 1.01330 1.88002 1.21582 1.26813 1.95083 1.22206 0.92714 0.85935 0.95196 0.88846 1.21548 0.97259 1.00781 0.80907 1.45794 1.09221 1.71479 1.10256 1.21387 0.83675 0.75284 0.89905 1.90661 1.29363 1.51729 1.75314 1.21630 1.00656 1.03922 0.89544 1.18705 0.91607 0.94733 0.94652 1.21745 0.93711 1.47072 0.95448 0.90498 1.26170 0.94864 0.95215 1.04351 1.70194 0.98688 1.50619 1.38352 0.85241 0.79114 0.77591 0.78084 1.17509 1.20659 1.20600 1.23017 1.01771 0.94778 0.95865 0.86498 1.23234 0.98198 0.98267 0.98826 1.23784 1.01519 0.85387 0.92830 1.88894 1.36345 1.52362 1.55079 1.23376 0.85897 0.96398 0.97587 0.88924 0.92787 0.92376 0.91011 0.92794 0.74785 0.87870 0.87531 0.99919 1.00109 0.92868 0.91917 0.88342 0.90108 0.89127 0.89925 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.80 113.37 1.22 1.44 16 2 O -0.40 -6.94 10.10 -148.98 -1.50 -8.45 16 3 C 0.10 1.62 1.86 30.59 0.06 1.68 16 4 H 0.09 1.14 7.89 -2.39 -0.02 1.12 16 5 C 0.12 3.12 4.73 86.38 0.41 3.53 16 6 N -0.71 -20.56 5.51 -463.06 -2.55 -23.11 16 7 C 0.51 20.76 7.83 87.66 0.69 21.45 16 8 O -0.59 -30.67 15.98 -3.01 -0.05 -30.72 16 9 C -0.12 -4.89 5.64 29.85 0.17 -4.72 16 10 C 0.04 2.33 4.26 29.85 0.13 2.46 16 11 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 12 H 0.08 4.04 7.74 -2.92 -0.02 4.02 16 13 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 14 N -0.94 -60.61 13.29 21.45 0.28 -60.32 16 15 Si 0.98 44.86 29.54 68.60 2.03 46.89 16 16 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 C -0.14 -1.88 3.03 -9.80 -0.03 -1.91 16 20 H 0.12 1.01 7.52 -2.39 -0.02 1.00 16 21 C -0.15 -2.44 6.30 31.98 0.20 -2.23 16 22 C 0.04 0.70 7.72 72.75 0.56 1.26 16 23 O -0.41 -9.50 11.52 -148.98 -1.72 -11.22 16 24 C 0.04 0.73 6.70 72.35 0.48 1.21 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.38 7.46 -2.39 -0.02 0.36 16 28 H 0.07 2.08 6.33 -2.39 -0.02 2.07 16 29 H 0.05 1.69 6.21 -2.39 -0.01 1.67 16 30 H 0.42 8.91 8.47 -92.71 -0.79 8.12 16 31 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 32 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 33 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 34 H -0.02 -1.27 8.10 -2.38 -0.02 -1.29 16 35 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 36 H 0.06 1.38 5.72 -2.39 -0.01 1.37 16 37 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.44 6.43 -2.39 -0.02 1.42 16 Total: -1.00 -81.81 334.12 1.31 -80.50 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.23 Total: 13.48 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 4.58 Total: -7.06 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -2.27 Total: -83.43 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -3.27 Total: -50.38 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -81.81 1.31 -80.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597877400.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.925 kcal (2) G-P(sol) polarization free energy of solvation -81.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds