Wall clock time and date at job start Mon Mar 30 2020 04:56:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42902 * 114.00066 * 2 1
4 4 H 1.09008 * 109.46754 * 30.00193 * 3 2 1
5 5 C 1.52999 * 109.46974 * 270.00141 * 3 2 1
6 6 C 1.53008 * 109.46632 * 180.02562 * 5 3 2
7 7 C 1.52995 * 109.47502 * 59.99711 * 6 5 3
8 8 C 1.52994 * 109.47146 * 300.00254 * 7 6 5
9 9 H 1.09002 * 109.47112 * 299.99219 * 8 7 6
10 10 C 1.53003 * 109.47065 * 179.97438 * 8 7 6
11 11 H 1.08997 * 109.47451 * 296.14687 * 10 8 7
12 12 C 1.53000 * 109.47049 * 176.14872 * 10 8 7
13 13 O 1.42903 * 109.47341 * 305.03052 * 12 10 8
14 14 N 1.46506 * 109.47147 * 56.15178 * 10 8 7
15 15 C 1.34774 * 119.99801 * 204.99936 * 14 10 8
16 16 O 1.21686 * 120.00322 * 0.02562 * 15 14 10
17 17 C 1.46375 * 119.99867 * 179.97438 * 15 14 10
18 18 H 1.08003 * 120.00121 * 353.97189 * 17 15 14
19 19 C 1.40049 * 120.00021 * 174.23270 * 17 15 14
20 20 N 1.30677 * 119.99648 * 5.83193 * 19 17 15
21 21 Si 1.86798 * 120.00043 * 185.82743 * 19 17 15
22 22 H 1.48493 * 109.46958 * 94.97672 * 21 19 17
23 23 H 1.48507 * 109.46894 * 214.97852 * 21 19 17
24 24 H 1.48500 * 109.47264 * 334.97702 * 21 19 17
25 25 C 1.52995 * 109.47156 * 149.99856 * 3 2 1
26 26 H 1.08998 * 109.47205 * 180.02562 * 1 2 3
27 27 H 1.09007 * 109.46822 * 300.00230 * 1 2 3
28 28 H 1.08999 * 109.47113 * 59.99821 * 1 2 3
29 29 H 1.08995 * 109.47201 * 299.99695 * 5 3 2
30 30 H 1.08992 * 109.47325 * 60.00414 * 5 3 2
31 31 H 1.09003 * 109.46824 * 179.97438 * 6 5 3
32 32 H 1.09003 * 109.46797 * 299.99367 * 6 5 3
33 33 H 1.08997 * 109.47105 * 179.97438 * 7 6 5
34 34 H 1.09011 * 109.46771 * 59.99811 * 7 6 5
35 35 H 1.09000 * 109.47528 * 65.02753 * 12 10 8
36 36 H 1.09002 * 109.47002 * 185.03195 * 12 10 8
37 37 H 0.96696 * 114.00386 * 180.02562 * 13 12 10
38 38 H 0.96998 * 120.00081 * 24.99755 * 14 10 8
39 39 H 0.97001 * 119.99745 * 179.97438 * 20 19 17
40 40 H 1.09005 * 109.47133 * 59.99737 * 25 3 2
41 41 H 1.09003 * 109.47270 * 300.00165 * 25 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 1 1.3450 1.9994 0.5139
5 6 2.2177 1.7714 -1.4425
6 6 2.8406 3.1689 -1.4424
7 6 4.1893 3.1261 -0.7213
8 6 3.9819 2.6601 0.7211
9 1 3.3170 3.3543 1.2351
10 6 5.3307 2.6168 1.4420
11 1 5.9716 1.8725 0.9694
12 6 5.1127 2.2438 2.9097
13 8 4.1802 3.1524 3.4988
14 7 5.9696 3.9328 1.3623
15 6 7.3101 4.0377 1.4539
16 8 7.9899 3.0394 1.6023
17 6 7.9485 5.3525 1.3737
18 1 7.3573 6.2267 1.1442
19 6 9.3268 5.4760 1.5891
20 7 10.0615 4.4072 1.7486
21 14 10.1148 7.1686 1.6485
22 1 10.2121 7.6201 3.0597
23 1 11.4745 7.1026 1.0549
24 1 9.2844 8.1286 0.8777
25 6 3.3589 1.2633 0.7213
26 1 -0.3633 -1.0276 0.0005
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5139 -0.8900
29 1 2.8829 1.0775 -1.9563
30 1 1.2569 1.8015 -1.9563
31 1 2.9888 3.5006 -2.4701
32 1 2.1756 3.8630 -0.9285
33 1 4.6332 4.1216 -0.7217
34 1 4.8543 2.4319 -1.2354
35 1 4.7201 1.2289 2.9723
36 1 6.0614 2.2999 3.4436
37 1 3.9942 2.9757 4.4311
38 1 5.4278 4.7285 1.2436
39 1 11.0162 4.4927 1.8974
40 1 4.0242 0.5693 0.2075
41 1 3.2111 0.9313 1.7489
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597948184.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:38
Heat of formation + Delta-G solvation = -158.982534 kcal
Electronic energy + Delta-G solvation = -21914.117257 eV
Core-core repulsion = 18600.063525 eV
Total energy + Delta-G solvation = -3314.053731 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 271.162 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-39.57876 -37.90856 -36.34751 -35.86493 -33.31257 -32.30534 -30.81166 -29.70053
-27.65169 -26.51877 -25.82597 -23.26704 -22.04895 -20.69895 -19.73984 -19.24594
-17.34098 -16.79655 -16.34943 -15.79318 -15.29289 -15.18552 -14.60574 -14.50466
-14.23814 -13.92461 -13.71412 -13.43217 -12.91998 -12.60446 -12.25855 -12.08156
-11.94684 -11.79949 -11.62269 -11.28541 -11.06262 -10.96215 -10.89049 -10.70809
-10.41557 -10.30154 -10.21065 -10.12782 -10.09091 -9.45853 -9.39591 -8.81559
-7.56857 -7.41413 -6.15869 -4.59138 3.15889 3.23120 3.26649 3.65824
4.13852 4.59055 4.71571 4.72839 4.84117 4.95959 5.06687 5.11994
5.17164 5.27248 5.32633 5.45603 5.52451 5.55755 5.59856 5.63868
5.80599 5.82488 5.91331 6.05641 6.08235 6.12372 6.19693 6.24259
6.33610 6.42922 6.53169 6.64817 6.82429 7.17237 7.47449 8.00305
8.02085 8.19205 8.40138 9.06743 9.61113 10.63799 10.83179
Molecular weight = 271.16amu
Principal moments of inertia in cm(-1)
A = 0.031880 B = 0.004289 C = 0.004056
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 878.095660 B = 6526.604048 C = 6901.664423
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.387 6.387
3 C 0.092 3.908
4 H 0.059 0.941
5 C -0.139 4.139
6 C -0.115 4.115
7 C -0.115 4.115
8 C -0.084 4.084
9 H 0.080 0.920
10 C 0.167 3.833
11 H 0.086 0.914
12 C 0.063 3.937
13 O -0.567 6.567
14 N -0.752 5.752
15 C 0.557 3.443
16 O -0.585 6.585
17 C -0.545 4.545
18 H 0.067 0.933
19 C 0.088 3.912
20 N -0.769 5.769
21 Si 0.906 3.094
22 H -0.273 1.273
23 H -0.280 1.280
24 H -0.265 1.265
25 C -0.107 4.107
26 H 0.082 0.918
27 H 0.039 0.961
28 H 0.038 0.962
29 H 0.070 0.930
30 H 0.057 0.943
31 H 0.063 0.937
32 H 0.060 0.940
33 H 0.073 0.927
34 H 0.063 0.937
35 H 0.038 0.962
36 H 0.052 0.948
37 H 0.367 0.633
38 H 0.381 0.619
39 H 0.267 0.733
40 H 0.070 0.930
41 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.019 -4.022 -2.434 17.657
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.306 6.306
3 C 0.034 3.966
4 H 0.077 0.923
5 C -0.177 4.177
6 C -0.153 4.153
7 C -0.153 4.153
8 C -0.103 4.103
9 H 0.098 0.902
10 C 0.060 3.940
11 H 0.104 0.896
12 C -0.016 4.016
13 O -0.371 6.371
14 N -0.405 5.405
15 C 0.361 3.639
16 O -0.468 6.468
17 C -0.582 4.582
18 H 0.085 0.915
19 C -0.131 4.131
20 N -0.398 5.398
21 Si 0.731 3.269
22 H -0.199 1.199
23 H -0.205 1.205
24 H -0.189 1.189
25 C -0.145 4.145
26 H 0.100 0.900
27 H 0.058 0.942
28 H 0.057 0.943
29 H 0.088 0.912
30 H 0.075 0.925
31 H 0.082 0.918
32 H 0.079 0.921
33 H 0.091 0.909
34 H 0.081 0.919
35 H 0.056 0.944
36 H 0.070 0.930
37 H 0.212 0.788
38 H 0.213 0.787
39 H 0.078 0.922
40 H 0.088 0.912
41 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -16.184 -4.758 -2.920 17.120
hybrid contribution -0.081 1.126 0.602 1.280
sum -16.265 -3.631 -2.318 16.826
Atomic orbital electron populations
1.22742 0.81676 1.02335 0.99743 1.87913 1.19149 1.28479 1.95080
1.22168 0.95099 0.83786 0.95501 0.92305 1.22030 1.00871 0.97756
0.97019 1.21499 0.97276 0.95875 1.00635 1.21593 0.96247 1.02601
0.94844 1.21235 0.97000 0.96131 0.95905 0.90152 1.20537 0.92251
0.89620 0.91611 0.89634 1.22798 0.91849 0.90716 0.96229 1.86469
1.64965 1.57315 1.28344 1.46041 1.08011 1.05743 1.80747 1.18198
0.78997 0.90496 0.76244 1.90586 1.62510 1.39089 1.54607 1.20891
0.93032 0.92801 1.51480 0.91507 1.25694 0.97231 0.97399 0.92812
1.70033 1.05904 1.29063 1.34771 0.86390 0.78688 0.83005 0.78835
1.19885 1.20528 1.18916 1.21603 0.94688 0.97623 1.00590 0.89973
0.94215 0.94321 0.91152 0.92456 0.91842 0.92147 0.90868 0.91871
0.94386 0.92985 0.78827 0.78680 0.92240 0.91174 0.91243
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.29 10.82 101.05 1.09 1.38 16
2 O -0.39 -4.88 10.35 -35.23 -0.36 -5.25 16
3 C 0.09 1.12 2.61 -26.73 -0.07 1.05 16
4 H 0.06 0.68 7.79 -51.92 -0.40 0.28 16
5 C -0.14 -1.59 5.54 -26.73 -0.15 -1.74 16
6 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16
7 C -0.12 -1.67 5.00 -26.74 -0.13 -1.81 16
8 C -0.08 -1.26 1.68 -90.65 -0.15 -1.41 16
9 H 0.08 1.23 7.43 -51.93 -0.39 0.85 16
10 C 0.17 3.18 1.95 -67.93 -0.13 3.05 16
11 H 0.09 1.84 7.58 -51.93 -0.39 1.44 16
12 C 0.06 1.12 6.45 37.16 0.24 1.36 16
13 O -0.57 -9.10 12.66 -35.23 -0.45 -9.54 16
14 N -0.75 -16.76 4.28 -55.21 -0.24 -17.00 16
15 C 0.56 15.72 7.71 -12.99 -0.10 15.62 16
16 O -0.58 -18.67 14.70 5.20 0.08 -18.59 16
17 C -0.54 -15.48 9.53 -35.63 -0.34 -15.82 16
18 H 0.07 1.76 7.85 -52.48 -0.41 1.34 16
19 C 0.09 2.47 5.50 -17.36 -0.10 2.38 16
20 N -0.77 -23.13 11.85 55.55 0.66 -22.47 16
21 Si 0.91 20.34 29.56 -169.99 -5.03 15.31 16
22 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16
23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16
25 C -0.11 -1.46 4.58 -26.76 -0.12 -1.58 16
26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16
27 H 0.04 0.33 8.09 -51.92 -0.42 -0.09 16
28 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16
29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
30 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16
31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.07 1.15 7.20 -51.93 -0.37 0.78 16
34 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16
35 H 0.04 0.58 6.79 -51.93 -0.35 0.23 16
36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16
37 H 0.37 4.24 9.12 45.56 0.42 4.66 16
38 H 0.38 7.85 8.13 -40.82 -0.33 7.52 16
39 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16
40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16
41 H 0.07 0.95 6.64 -51.93 -0.34 0.60 16
LS Contribution 329.65 15.07 4.97 4.97
Total: -1.00 -34.33 329.65 -6.40 -40.74
By element:
Atomic # 1 Polarization: 16.78 SS G_CDS: -5.91 Total: 10.86 kcal
Atomic # 6 Polarization: 1.09 SS G_CDS: -0.12 Total: 0.97 kcal
Atomic # 7 Polarization: -39.89 SS G_CDS: 0.42 Total: -39.47 kcal
Atomic # 8 Polarization: -32.65 SS G_CDS: -0.73 Total: -33.38 kcal
Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -34.33 -6.40 -40.74 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597948184.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -118.246 kcal
(2) G-P(sol) polarization free energy of solvation -34.334 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.579 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.737 kcal
(6) G-S(sol) free energy of system = (1) + (5) -158.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds