Wall clock time and date at job start Mon Mar 30 2020 04:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00244 * 2 1 4 4 C 1.52999 * 109.52698 * 61.63402 * 3 2 1 5 5 O 1.42894 * 109.47027 * 58.83128 * 4 3 2 6 6 C 1.53045 * 109.49456 * 301.55144 * 3 2 1 7 7 C 1.53036 * 109.54054 * 301.41826 * 6 3 2 8 8 C 1.53197 * 109.30857 * 298.63347 * 7 6 3 9 9 N 1.46923 * 108.77930 * 54.63615 * 8 7 6 10 10 C 1.34771 * 120.63250 * 126.36884 * 9 8 7 11 11 O 1.21284 * 119.99890 * 180.02562 * 10 9 8 12 12 C 1.50694 * 119.99937 * 0.02562 * 10 9 8 13 13 C 1.53004 * 109.46958 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47186 * 180.02562 * 13 12 10 15 15 H 1.08007 * 119.99461 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00355 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99747 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00420 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47127 * 89.99648 * 18 16 14 20 20 H 1.48504 * 109.47614 * 210.00015 * 18 16 14 21 21 H 1.48502 * 109.47009 * 330.00044 * 18 16 14 22 22 C 1.46926 * 118.73722 * 306.39362 * 9 8 7 23 23 H 1.08994 * 109.47661 * 185.52185 * 1 2 3 24 24 H 1.09005 * 109.47385 * 305.52148 * 1 2 3 25 25 H 1.09003 * 109.46939 * 65.51714 * 1 2 3 26 26 H 1.09003 * 109.47349 * 178.83322 * 4 3 2 27 27 H 1.09004 * 109.47134 * 298.83319 * 4 3 2 28 28 H 0.96704 * 114.00088 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.46081 * 181.39166 * 6 3 2 30 30 H 1.09002 * 109.44773 * 61.42986 * 6 3 2 31 31 H 1.09000 * 109.50131 * 178.68110 * 7 6 3 32 32 H 1.09001 * 109.52400 * 58.59674 * 7 6 3 33 33 H 1.08997 * 109.58354 * 294.84567 * 8 7 6 34 34 H 1.09005 * 109.70015 * 174.49340 * 8 7 6 35 35 H 1.09005 * 109.47500 * 299.99875 * 12 10 9 36 36 H 1.09001 * 109.47317 * 60.00372 * 12 10 9 37 37 H 1.09001 * 109.47067 * 299.99732 * 13 12 10 38 38 H 1.08998 * 109.47140 * 60.00466 * 13 12 10 39 39 H 0.97005 * 120.00206 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.58987 * 173.39480 * 22 9 8 41 41 H 1.09005 * 109.58721 * 293.82023 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5924 2.0513 1.2689 5 8 2.0205 1.3156 2.4166 6 6 1.5284 2.0791 -1.2294 7 6 1.9171 1.3172 -2.4984 8 6 3.4427 1.1973 -2.5700 9 7 3.9279 0.5846 -1.3258 10 6 4.7161 -0.5080 -1.3603 11 8 5.1097 -1.0047 -0.3262 12 6 5.1085 -1.1125 -2.6838 13 6 5.9981 -2.3338 -2.4429 14 6 6.3910 -2.9380 -3.7664 15 1 6.0408 -2.4954 -4.6872 16 6 7.1967 -4.0563 -3.8017 17 7 7.6227 -4.5955 -2.6803 18 14 7.6831 -4.8057 -5.4421 19 1 8.9470 -4.1854 -5.9144 20 1 7.8803 -6.2685 -5.2792 21 1 6.6087 -4.5589 -6.4371 22 6 3.5369 1.1854 -0.0433 23 1 -0.3634 -1.0228 0.0989 24 1 -0.3634 0.5971 0.8364 25 1 -0.3633 0.4259 -0.9353 26 1 2.0530 3.0392 1.2780 27 1 0.5076 2.1560 1.2882 28 1 1.7886 1.7305 3.2588 29 1 1.9913 3.0658 -1.2420 30 1 0.4445 2.1871 -1.1884 31 1 1.5532 1.8569 -3.3728 32 1 1.4746 0.3213 -2.4754 33 1 3.8821 2.1882 -2.6849 34 1 3.7228 0.5727 -3.4183 35 1 4.2122 -1.4174 -3.2241 36 1 5.6545 -0.3753 -3.2724 37 1 6.8945 -2.0294 -1.9025 38 1 5.4518 -3.0709 -1.8545 39 1 8.1898 -5.3821 -2.7051 40 1 3.8769 0.5518 0.7758 41 1 3.9839 2.1753 0.0479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598000384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:10 Heat of formation + Delta-G solvation = -134.920075 kcal Electronic energy + Delta-G solvation = -22058.685395 eV Core-core repulsion = 18745.675090 eV Total energy + Delta-G solvation = -3313.010305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41695 -38.56714 -36.45281 -35.80179 -33.41858 -32.37387 -31.52579 -30.58246 -27.19705 -26.43243 -25.79527 -24.50130 -22.21910 -21.43625 -20.00589 -18.41512 -17.56854 -16.99292 -16.63842 -15.89032 -15.69533 -15.50545 -15.09442 -14.79954 -14.38549 -14.09563 -13.80874 -13.50293 -13.05417 -12.93811 -12.74771 -12.64317 -12.16542 -11.99942 -11.83150 -11.45138 -11.23164 -11.15210 -10.89170 -10.87457 -10.52399 -10.47952 -10.23125 -9.86143 -9.58177 -9.50656 -9.06706 -8.85140 -8.30056 -8.22194 -5.88851 -3.93050 3.32617 3.37759 3.41739 3.43902 3.46627 3.56878 4.01566 4.51493 4.53485 4.55425 4.80476 4.83024 4.95802 5.02920 5.16357 5.21077 5.35249 5.36878 5.43552 5.45791 5.45828 5.59742 5.66175 5.68424 5.79214 5.83182 6.13994 6.21724 6.31524 6.33229 6.82931 7.01187 7.21514 7.41036 7.82317 7.90993 7.96716 8.16282 8.46851 8.91650 9.15925 9.69912 11.22176 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.004137 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.990425 B = 6765.847345 C = 7056.538057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.350 6.350 3 C 0.105 3.895 4 C 0.053 3.947 5 O -0.554 6.554 6 C -0.143 4.143 7 C -0.131 4.131 8 C 0.108 3.892 9 N -0.620 5.620 10 C 0.516 3.484 11 O -0.530 6.530 12 C -0.127 4.127 13 C 0.036 3.964 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.131 3.869 23 H 0.084 0.916 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.376 0.624 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.107 0.893 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.603 18.515 4.130 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.268 6.268 3 C 0.064 3.936 4 C -0.026 4.026 5 O -0.358 6.358 6 C -0.181 4.181 7 C -0.169 4.169 8 C -0.015 4.015 9 N -0.356 5.356 10 C 0.306 3.694 11 O -0.405 6.405 12 C -0.167 4.167 13 C -0.001 4.001 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C 0.007 3.993 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.222 0.778 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.125 0.875 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.908 17.487 4.293 24.027 hybrid contribution -0.379 0.352 -0.468 0.698 sum -16.287 17.839 3.825 24.456 Atomic orbital electron populations 1.22769 0.82347 1.02697 0.99333 1.88183 1.18572 1.25522 1.94516 1.21961 0.95461 0.84369 0.91799 1.22740 0.98182 0.94623 0.87031 1.86660 1.82291 1.51262 1.15613 1.22071 1.01382 0.99494 0.95118 1.21832 0.96670 1.01676 0.96738 1.21677 0.93414 0.98661 0.87752 1.48159 1.51465 1.30187 1.05757 1.21501 0.76559 0.78246 0.93076 1.90660 1.53709 1.60182 1.35902 1.21858 1.01706 1.00825 0.92265 1.18909 0.94175 0.90258 0.96762 1.21226 1.30696 1.11888 0.92525 0.92675 1.25022 0.96178 0.96969 0.96218 1.70010 1.34874 1.22036 1.25916 0.86604 0.78812 0.78408 0.84183 1.20720 1.21260 1.19921 1.21338 0.90073 0.99101 0.88750 0.89758 0.94322 0.94200 0.92710 0.93287 0.77811 0.90629 0.91350 0.90644 0.90564 0.91888 0.88816 0.90373 0.90462 0.95861 0.95781 0.93010 0.87503 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.17 101.05 1.03 1.30 16 2 O -0.35 -5.20 9.42 -45.71 -0.43 -5.63 16 3 C 0.11 1.26 0.51 -90.50 -0.05 1.21 16 4 C 0.05 0.49 5.60 37.16 0.21 0.70 16 5 O -0.55 -6.17 13.03 -45.71 -0.60 -6.77 16 6 C -0.14 -1.28 4.23 -26.69 -0.11 -1.39 16 7 C -0.13 -1.31 5.94 -26.61 -0.16 -1.47 16 8 C 0.11 1.31 6.34 -3.71 -0.02 1.28 16 9 N -0.62 -10.14 2.91 -172.77 -0.50 -10.65 16 10 C 0.52 11.05 7.70 -10.99 -0.08 10.97 16 11 O -0.53 -13.74 15.39 5.55 0.09 -13.65 16 12 C -0.13 -2.75 3.98 -27.88 -0.11 -2.87 16 13 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 14 C -0.52 -15.32 9.11 -34.44 -0.31 -15.63 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -28.13 13.29 55.43 0.74 -27.40 16 18 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.13 1.94 5.17 -3.71 -0.02 1.92 16 23 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.04 0.35 6.22 -51.93 -0.32 0.03 16 25 H 0.04 0.36 6.73 -51.93 -0.35 0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.37 6.52 -51.93 -0.34 0.03 16 28 H 0.38 2.23 9.12 45.56 0.42 2.64 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.51 6.73 -51.93 -0.35 0.16 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.91 7.61 -51.93 -0.40 0.52 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.15 5.93 -51.93 -0.31 0.84 16 35 H 0.08 1.57 7.69 -51.93 -0.40 1.17 16 36 H 0.08 1.52 7.94 -51.93 -0.41 1.10 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.11 2.00 6.76 -51.93 -0.35 1.64 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -37.80 325.73 -6.40 -44.20 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.73 Total: -0.63 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 0.15 Total: -1.45 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.23 Total: -38.05 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.94 Total: -26.05 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -37.80 -6.40 -44.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598000384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.719 kcal (2) G-P(sol) polarization free energy of solvation -37.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds