Wall clock time and date at job start Mon Mar 30 2020 04:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00244 * 2 1 4 4 C 1.52999 * 109.52698 * 61.63402 * 3 2 1 5 5 O 1.42894 * 109.47027 * 58.83128 * 4 3 2 6 6 C 1.53045 * 109.49456 * 301.55144 * 3 2 1 7 7 C 1.53036 * 109.54054 * 301.41826 * 6 3 2 8 8 C 1.53197 * 109.30857 * 298.63347 * 7 6 3 9 9 N 1.46923 * 108.77930 * 54.63615 * 8 7 6 10 10 C 1.34771 * 120.63250 * 126.36884 * 9 8 7 11 11 O 1.21284 * 119.99890 * 180.02562 * 10 9 8 12 12 C 1.50694 * 119.99937 * 0.02562 * 10 9 8 13 13 C 1.53004 * 109.46958 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47186 * 180.02562 * 13 12 10 15 15 H 1.08007 * 119.99461 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00355 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99747 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00420 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47127 * 89.99648 * 18 16 14 20 20 H 1.48504 * 109.47614 * 210.00015 * 18 16 14 21 21 H 1.48502 * 109.47009 * 330.00044 * 18 16 14 22 22 C 1.46926 * 118.73722 * 306.39362 * 9 8 7 23 23 H 1.08994 * 109.47661 * 185.52185 * 1 2 3 24 24 H 1.09005 * 109.47385 * 305.52148 * 1 2 3 25 25 H 1.09003 * 109.46939 * 65.51714 * 1 2 3 26 26 H 1.09003 * 109.47349 * 178.83322 * 4 3 2 27 27 H 1.09004 * 109.47134 * 298.83319 * 4 3 2 28 28 H 0.96704 * 114.00088 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.46081 * 181.39166 * 6 3 2 30 30 H 1.09002 * 109.44773 * 61.42986 * 6 3 2 31 31 H 1.09000 * 109.50131 * 178.68110 * 7 6 3 32 32 H 1.09001 * 109.52400 * 58.59674 * 7 6 3 33 33 H 1.08997 * 109.58354 * 294.84567 * 8 7 6 34 34 H 1.09005 * 109.70015 * 174.49340 * 8 7 6 35 35 H 1.09005 * 109.47500 * 299.99875 * 12 10 9 36 36 H 1.09001 * 109.47317 * 60.00372 * 12 10 9 37 37 H 1.09001 * 109.47067 * 299.99732 * 13 12 10 38 38 H 1.08998 * 109.47140 * 60.00466 * 13 12 10 39 39 H 0.97005 * 120.00206 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.58987 * 173.39480 * 22 9 8 41 41 H 1.09005 * 109.58721 * 293.82023 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5924 2.0513 1.2689 5 8 2.0205 1.3156 2.4166 6 6 1.5284 2.0791 -1.2294 7 6 1.9171 1.3172 -2.4984 8 6 3.4427 1.1973 -2.5700 9 7 3.9279 0.5846 -1.3258 10 6 4.7161 -0.5080 -1.3603 11 8 5.1097 -1.0047 -0.3262 12 6 5.1085 -1.1125 -2.6838 13 6 5.9981 -2.3338 -2.4429 14 6 6.3910 -2.9380 -3.7664 15 1 6.0408 -2.4954 -4.6872 16 6 7.1967 -4.0563 -3.8017 17 7 7.6227 -4.5955 -2.6803 18 14 7.6831 -4.8057 -5.4421 19 1 8.9470 -4.1854 -5.9144 20 1 7.8803 -6.2685 -5.2792 21 1 6.6087 -4.5589 -6.4371 22 6 3.5369 1.1854 -0.0433 23 1 -0.3634 -1.0228 0.0989 24 1 -0.3634 0.5971 0.8364 25 1 -0.3633 0.4259 -0.9353 26 1 2.0530 3.0392 1.2780 27 1 0.5076 2.1560 1.2882 28 1 1.7886 1.7305 3.2588 29 1 1.9913 3.0658 -1.2420 30 1 0.4445 2.1871 -1.1884 31 1 1.5532 1.8569 -3.3728 32 1 1.4746 0.3213 -2.4754 33 1 3.8821 2.1882 -2.6849 34 1 3.7228 0.5727 -3.4183 35 1 4.2122 -1.4174 -3.2241 36 1 5.6545 -0.3753 -3.2724 37 1 6.8945 -2.0294 -1.9025 38 1 5.4518 -3.0709 -1.8545 39 1 8.1898 -5.3821 -2.7051 40 1 3.8769 0.5518 0.7758 41 1 3.9839 2.1753 0.0479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598000384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:10 Heat of formation + Delta-G solvation = -165.294533 kcal Electronic energy + Delta-G solvation = -22060.002530 eV Core-core repulsion = 18745.675090 eV Total energy + Delta-G solvation = -3314.327440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.53475 -39.94456 -37.36803 -36.91734 -35.60095 -33.58819 -32.99833 -32.04031 -28.41915 -27.72828 -26.82089 -26.00980 -23.42313 -23.08058 -21.00929 -19.84873 -18.83107 -18.32122 -17.72897 -17.59360 -16.75602 -16.57117 -16.38976 -16.34278 -16.15362 -15.03706 -14.85323 -14.61212 -14.53460 -14.17647 -14.00505 -13.70838 -13.55858 -13.49124 -13.18615 -12.85731 -12.78545 -12.47203 -12.31106 -12.01700 -11.93776 -11.92748 -11.52858 -11.36920 -11.30002 -10.96329 -10.64647 -10.56789 -10.38341 -9.56684 -8.17115 -6.32170 1.42052 1.45947 1.56831 1.72157 2.08258 2.44108 2.73808 3.15462 3.32670 3.64455 3.75784 3.89217 4.05119 4.14088 4.21142 4.29884 4.42806 4.45802 4.46891 4.51108 4.55206 4.61581 4.64949 4.67783 4.83361 4.86746 4.90890 4.99433 5.07298 5.18772 5.37623 5.47683 5.60935 5.64761 5.84733 6.17129 6.37754 6.46176 6.85990 6.91542 7.31549 7.38369 8.96039 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.004137 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.990425 B = 6765.847345 C = 7056.538057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.398 6.398 3 C 0.099 3.901 4 C 0.053 3.947 5 O -0.589 6.589 6 C -0.136 4.136 7 C -0.127 4.127 8 C 0.095 3.905 9 N -0.608 5.608 10 C 0.508 3.492 11 O -0.595 6.595 12 C -0.112 4.112 13 C 0.043 3.957 14 C -0.542 4.542 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.940 5.940 18 Si 0.978 3.022 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.254 1.254 22 C 0.125 3.875 23 H 0.075 0.925 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.395 0.605 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.105 0.895 37 H -0.020 1.020 38 H -0.024 1.024 39 H 0.263 0.737 40 H 0.056 0.944 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.512 21.375 1.462 28.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.317 6.317 3 C 0.058 3.942 4 C -0.025 4.025 5 O -0.397 6.397 6 C -0.174 4.174 7 C -0.165 4.165 8 C -0.026 4.026 9 N -0.341 5.341 10 C 0.299 3.701 11 O -0.475 6.475 12 C -0.151 4.151 13 C 0.006 3.994 14 C -0.580 4.580 15 H 0.096 0.904 16 C -0.206 4.206 17 N -0.580 5.580 18 Si 0.801 3.199 19 H -0.195 1.195 20 H -0.212 1.212 21 H -0.177 1.177 22 C 0.002 3.998 23 H 0.094 0.906 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.244 0.756 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.123 0.877 37 H -0.001 1.001 38 H -0.006 1.006 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.882 20.430 1.604 27.198 hybrid contribution 0.181 -0.488 0.438 0.680 sum -17.701 19.942 2.042 26.743 Atomic orbital electron populations 1.22890 0.80510 1.02853 1.01040 1.88119 1.20819 1.27787 1.94988 1.22140 0.92861 0.84198 0.94969 1.22839 0.99681 0.94838 0.85160 1.86624 1.82919 1.52827 1.17330 1.22086 1.03001 0.99776 0.92514 1.21829 0.94465 1.01211 0.98980 1.22122 0.95444 0.99756 0.85269 1.48141 1.49308 1.28279 1.08327 1.21419 0.77284 0.79524 0.91912 1.90632 1.56690 1.62623 1.37551 1.21600 1.01447 0.98790 0.93279 1.18686 0.93093 0.91938 0.95700 1.21694 1.30750 1.12285 0.93256 0.90409 1.26197 0.95929 0.97535 1.00907 1.70206 1.35786 1.22728 1.29258 0.85262 0.79126 0.76989 0.78490 1.19496 1.21204 1.17733 1.21507 0.93133 0.98933 0.86201 0.90612 0.92698 0.92166 0.90061 0.90992 0.75576 0.87888 0.89023 0.87033 0.93012 0.88530 0.89082 0.88410 0.87663 1.00112 1.00583 0.92858 0.92523 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.17 113.37 1.15 1.61 16 2 O -0.40 -11.76 9.42 -138.96 -1.31 -13.06 16 3 C 0.10 2.18 0.51 -10.71 -0.01 2.17 16 4 C 0.05 0.85 5.60 71.98 0.40 1.25 16 5 O -0.59 -12.85 13.03 -138.96 -1.81 -14.66 16 6 C -0.14 -1.84 4.23 30.62 0.13 -1.71 16 7 C -0.13 -2.05 5.94 30.67 0.18 -1.87 16 8 C 0.10 2.02 6.34 86.36 0.55 2.57 16 9 N -0.61 -19.69 2.91 -818.90 -2.39 -22.07 16 10 C 0.51 22.79 7.70 87.66 0.67 23.47 16 11 O -0.59 -33.52 15.39 -3.04 -0.05 -33.56 16 12 C -0.11 -4.95 3.98 29.85 0.12 -4.83 16 13 C 0.04 2.59 4.26 29.85 0.13 2.72 16 14 C -0.54 -32.12 9.11 25.60 0.23 -31.89 16 15 H 0.08 4.16 7.74 -2.91 -0.02 4.14 16 16 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 17 N -0.94 -61.85 13.29 21.45 0.28 -61.56 16 18 Si 0.98 45.42 29.54 68.60 2.03 47.45 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.25 -10.87 7.11 99.48 0.71 -10.16 16 22 C 0.12 3.68 5.17 86.36 0.45 4.13 16 23 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.05 0.87 6.22 -2.38 -0.01 0.86 16 25 H 0.06 0.91 6.73 -2.39 -0.02 0.90 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.82 6.52 -2.38 -0.02 0.81 16 28 H 0.39 4.36 9.12 -74.05 -0.68 3.69 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.88 6.73 -2.39 -0.02 0.86 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.12 7.61 -2.39 -0.02 1.10 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.98 5.93 -2.38 -0.01 1.97 16 35 H 0.10 3.92 7.69 -2.38 -0.02 3.90 16 36 H 0.11 4.04 7.94 -2.39 -0.02 4.02 16 37 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 38 H -0.02 -1.65 8.10 -2.39 -0.02 -1.67 16 39 H 0.26 16.13 8.31 -92.70 -0.77 15.35 16 40 H 0.06 2.26 6.76 -2.39 -0.02 2.25 16 41 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -90.52 325.73 1.58 -88.94 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.35 Total: 10.98 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 4.47 Total: -2.44 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -2.10 Total: -83.64 kcal Atomic # 8 Polarization: -58.13 SS G_CDS: -3.17 Total: -61.29 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -90.52 1.58 -88.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598000384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.356 kcal (2) G-P(sol) polarization free energy of solvation -90.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds