Wall clock time and date at job start Mon Mar 30 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47011 * 110.99807 * 2 1 4 4 C 1.53099 * 109.25646 * 182.39595 * 3 2 1 5 5 O 1.43023 * 109.25837 * 303.15226 * 4 3 2 6 6 C 1.43012 * 113.73636 * 58.67100 * 5 4 3 7 7 C 1.47100 * 110.98780 * 123.66134 * 2 1 3 8 8 H 1.08999 * 109.49797 * 297.52325 * 7 2 1 9 9 C 1.52994 * 109.57024 * 57.68675 * 7 2 1 10 10 N 1.46506 * 109.47244 * 54.19463 * 9 7 2 11 11 C 1.34775 * 120.00034 * 174.94989 * 10 9 7 12 12 O 1.21589 * 120.00047 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99931 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00036 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47146 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47222 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00106 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00081 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00145 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00151 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47205 * 89.99324 * 20 18 16 22 22 H 1.48495 * 109.47112 * 209.99947 * 20 18 16 23 23 H 1.48502 * 109.46887 * 329.99980 * 20 18 16 24 24 H 1.09001 * 109.47474 * 53.83710 * 1 2 3 25 25 H 1.09002 * 109.47170 * 173.83304 * 1 2 3 26 26 H 1.08994 * 109.46887 * 293.83104 * 1 2 3 27 27 H 1.09000 * 109.50683 * 62.46169 * 3 2 1 28 28 H 1.09000 * 109.50965 * 302.32693 * 3 2 1 29 29 H 1.09001 * 109.50498 * 183.22064 * 4 3 2 30 30 H 1.08993 * 109.50990 * 63.09008 * 4 3 2 31 31 H 1.09001 * 109.50989 * 61.26591 * 6 5 4 32 32 H 1.08995 * 109.50989 * 181.35265 * 6 5 4 33 33 H 1.08996 * 109.47818 * 174.19975 * 9 7 2 34 34 H 1.09004 * 109.47048 * 294.20186 * 9 7 2 35 35 H 0.96996 * 119.99872 * 354.95544 * 10 9 7 36 36 H 0.97000 * 119.99905 * 359.97438 * 13 11 10 37 37 H 1.08996 * 109.47369 * 300.00256 * 14 13 11 38 38 H 1.09005 * 109.46904 * 60.00049 * 14 13 11 39 39 H 1.08996 * 109.47641 * 300.00635 * 15 14 13 40 40 H 1.09005 * 109.46733 * 60.00490 * 15 14 13 41 41 H 0.97003 * 120.00217 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 -0.0604 5 8 4.0175 0.5573 1.0402 6 6 3.5250 -0.7850 1.0708 7 6 1.9959 -0.7613 1.1431 8 1 1.6829 -0.2854 2.0725 9 6 1.4600 -2.1935 1.0958 10 7 1.7650 -2.7862 -0.2088 11 6 1.4773 -4.0817 -0.4443 12 8 0.9641 -4.7583 0.4259 13 7 1.7584 -4.6271 -1.6442 14 6 1.4461 -6.0354 -1.9000 15 6 1.8617 -6.3989 -3.3269 16 6 1.5400 -7.8474 -3.5903 17 1 1.0842 -8.4484 -2.8174 18 6 1.8274 -8.4053 -4.8179 19 7 2.3820 -7.6733 -5.7592 20 14 1.4279 -10.2006 -5.1446 21 1 0.0529 -10.3095 -5.6949 22 1 2.3982 -10.7534 -6.1234 23 1 1.5149 -10.9660 -3.8750 24 1 -0.3634 0.6064 -0.8297 25 1 -0.3633 -1.0217 -0.1104 26 1 -0.3633 0.4152 0.9400 27 1 1.6828 1.8825 0.9110 28 1 1.6133 1.9092 -0.8682 29 1 3.9221 2.3398 -0.0030 30 1 3.8385 0.8645 -0.9965 31 1 3.8385 -1.3084 0.1675 32 1 3.9228 -1.2989 1.9458 33 1 1.9305 -2.7838 1.8820 34 1 0.3804 -2.1826 1.2464 35 1 2.1742 -2.2463 -0.9030 36 1 2.1675 -4.0871 -2.3385 37 1 1.9885 -6.6622 -1.1923 38 1 0.3747 -6.1972 -1.7817 39 1 1.3190 -5.7721 -4.0344 40 1 2.9331 -6.2370 -3.4456 41 1 2.5839 -8.0657 -6.6231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599024706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:07 Heat of formation + Delta-G solvation = -74.444033 kcal Electronic energy + Delta-G solvation = -21091.356217 eV Core-core repulsion = 17813.261102 eV Total energy + Delta-G solvation = -3278.095116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37023 -39.20901 -36.45001 -34.96146 -34.28347 -32.80997 -31.55675 -29.53990 -29.02625 -26.59805 -24.53355 -24.49205 -22.89608 -21.18466 -20.61059 -19.98831 -18.06530 -16.84965 -16.74924 -16.34282 -15.91272 -15.49968 -15.08773 -15.02437 -14.97127 -14.45761 -14.13947 -13.85447 -13.54332 -13.41284 -12.85968 -12.69830 -12.34077 -12.25326 -12.17994 -11.72891 -11.37210 -11.15185 -11.00835 -10.87896 -10.60558 -10.28027 -9.99603 -9.89144 -9.52046 -9.22904 -8.92663 -8.80364 -8.44770 -8.17753 -6.06466 -4.08911 3.07171 3.31574 3.37523 3.40846 3.43778 3.52030 3.67233 4.37322 4.43128 4.46935 4.55092 4.75764 4.83043 4.88648 4.90637 5.16483 5.20481 5.25416 5.30626 5.39809 5.44750 5.52938 5.54936 5.64067 5.73970 6.34761 6.44442 6.47984 6.54687 6.71379 6.79026 6.82794 7.06897 7.34705 7.61702 7.67460 7.93128 8.29982 8.52191 8.96424 9.07495 9.55672 11.05209 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.032838 B = 0.003095 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.478171 B = 9044.015227 C = 9273.248632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.535 5.535 3 C 0.018 3.982 4 C 0.061 3.939 5 O -0.384 6.384 6 C 0.068 3.932 7 C 0.035 3.965 8 H 0.065 0.935 9 C 0.150 3.850 10 N -0.744 5.744 11 C 0.697 3.303 12 O -0.603 6.603 13 N -0.738 5.738 14 C 0.141 3.859 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.027 0.973 27 H 0.042 0.958 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.401 0.599 36 H 0.393 0.607 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 20.688 11.427 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.261 5.261 3 C -0.110 4.110 4 C -0.016 4.016 5 O -0.303 6.303 6 C -0.009 4.009 7 C -0.074 4.074 8 H 0.083 0.917 9 C 0.024 3.976 10 N -0.402 5.402 11 C 0.397 3.603 12 O -0.482 6.482 13 N -0.392 5.392 14 C 0.018 3.982 15 C -0.025 4.025 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.236 0.764 36 H 0.226 0.774 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.416 19.862 11.758 23.085 hybrid contribution -0.397 -0.081 -0.443 0.600 sum 0.019 19.781 11.316 22.789 Atomic orbital electron populations 1.22455 0.86384 1.03354 1.00481 1.62188 1.08741 1.13278 1.41902 1.22819 0.96545 0.89794 1.01848 1.22698 0.92117 0.96545 0.90268 1.88005 1.69873 1.23948 1.48453 1.22739 0.91124 0.83771 1.03297 1.22687 0.96778 0.94617 0.93278 0.91698 1.21037 1.00330 0.90341 0.85848 1.44986 1.68770 1.10242 1.16199 1.16082 0.79407 0.81408 0.83401 1.90883 1.50319 1.61587 1.45432 1.45511 1.66344 1.14197 1.13140 1.21566 0.99639 0.77156 0.99841 1.19322 0.97181 0.97087 0.88876 1.21061 1.40828 0.95320 0.98669 0.92237 1.24995 0.95011 0.98202 0.96110 1.69958 1.42645 1.36197 1.04570 0.86515 0.78119 0.84781 0.78155 1.20590 1.21204 1.19719 0.91112 0.90303 0.95437 0.93941 0.89392 0.88433 0.91971 0.91742 0.88051 0.90767 0.91716 0.76415 0.77404 0.92855 0.92894 0.95994 0.95976 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.09 60.07 0.55 0.72 16 2 N -0.54 -4.53 4.14 -234.51 -0.97 -5.50 16 3 C 0.02 0.13 5.66 -3.71 -0.02 0.11 16 4 C 0.06 0.45 7.01 37.21 0.26 0.71 16 5 O -0.38 -3.77 10.83 -35.23 -0.38 -4.15 16 6 C 0.07 0.61 6.20 37.21 0.23 0.84 16 7 C 0.04 0.31 2.26 -67.55 -0.15 0.16 16 8 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 9 C 0.15 1.64 4.66 -4.04 -0.02 1.62 16 10 N -0.74 -9.50 5.05 -65.22 -0.33 -9.83 16 11 C 0.70 12.29 8.57 -86.92 -0.74 11.55 16 12 O -0.60 -13.05 16.34 5.29 0.09 -12.96 16 13 N -0.74 -13.30 5.56 -65.23 -0.36 -13.67 16 14 C 0.14 3.08 5.61 -4.04 -0.02 3.06 16 15 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 16 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 20 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 25 H 0.08 0.76 6.55 -51.93 -0.34 0.42 16 26 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.61 7.27 -51.93 -0.38 0.23 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.75 6.77 -51.93 -0.35 0.40 16 35 H 0.40 4.50 7.44 -40.82 -0.30 4.20 16 36 H 0.39 6.17 8.49 -40.82 -0.35 5.83 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -32.65 333.12 -8.45 -41.10 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.75 Total: 3.44 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.47 Total: 5.61 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.93 Total: -54.55 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.30 Total: -17.12 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.65 -8.45 -41.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599024706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.349 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds