Wall clock time and date at job start Mon Mar 30 2020 05:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47011 * 110.99807 * 2 1 4 4 C 1.53099 * 109.25646 * 182.39595 * 3 2 1 5 5 O 1.43023 * 109.25837 * 303.15226 * 4 3 2 6 6 C 1.43012 * 113.73636 * 58.67100 * 5 4 3 7 7 C 1.47100 * 110.98780 * 123.66134 * 2 1 3 8 8 H 1.08999 * 109.49797 * 297.52325 * 7 2 1 9 9 C 1.52994 * 109.57024 * 57.68675 * 7 2 1 10 10 N 1.46506 * 109.47244 * 54.19463 * 9 7 2 11 11 C 1.34775 * 120.00034 * 174.94989 * 10 9 7 12 12 O 1.21589 * 120.00047 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99931 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00036 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47146 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.47222 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00106 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00081 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00145 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00151 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47205 * 89.99324 * 20 18 16 22 22 H 1.48495 * 109.47112 * 209.99947 * 20 18 16 23 23 H 1.48502 * 109.46887 * 329.99980 * 20 18 16 24 24 H 1.09001 * 109.47474 * 53.83710 * 1 2 3 25 25 H 1.09002 * 109.47170 * 173.83304 * 1 2 3 26 26 H 1.08994 * 109.46887 * 293.83104 * 1 2 3 27 27 H 1.09000 * 109.50683 * 62.46169 * 3 2 1 28 28 H 1.09000 * 109.50965 * 302.32693 * 3 2 1 29 29 H 1.09001 * 109.50498 * 183.22064 * 4 3 2 30 30 H 1.08993 * 109.50990 * 63.09008 * 4 3 2 31 31 H 1.09001 * 109.50989 * 61.26591 * 6 5 4 32 32 H 1.08995 * 109.50989 * 181.35265 * 6 5 4 33 33 H 1.08996 * 109.47818 * 174.19975 * 9 7 2 34 34 H 1.09004 * 109.47048 * 294.20186 * 9 7 2 35 35 H 0.96996 * 119.99872 * 354.95544 * 10 9 7 36 36 H 0.97000 * 119.99905 * 359.97438 * 13 11 10 37 37 H 1.08996 * 109.47369 * 300.00256 * 14 13 11 38 38 H 1.09005 * 109.46904 * 60.00049 * 14 13 11 39 39 H 1.08996 * 109.47641 * 300.00635 * 15 14 13 40 40 H 1.09005 * 109.46733 * 60.00490 * 15 14 13 41 41 H 0.97003 * 120.00217 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 -0.0604 5 8 4.0175 0.5573 1.0402 6 6 3.5250 -0.7850 1.0708 7 6 1.9959 -0.7613 1.1431 8 1 1.6829 -0.2854 2.0725 9 6 1.4600 -2.1935 1.0958 10 7 1.7650 -2.7862 -0.2088 11 6 1.4773 -4.0817 -0.4443 12 8 0.9641 -4.7583 0.4259 13 7 1.7584 -4.6271 -1.6442 14 6 1.4461 -6.0354 -1.9000 15 6 1.8617 -6.3989 -3.3269 16 6 1.5400 -7.8474 -3.5903 17 1 1.0842 -8.4484 -2.8174 18 6 1.8274 -8.4053 -4.8179 19 7 2.3820 -7.6733 -5.7592 20 14 1.4279 -10.2006 -5.1446 21 1 0.0529 -10.3095 -5.6949 22 1 2.3982 -10.7534 -6.1234 23 1 1.5149 -10.9660 -3.8750 24 1 -0.3634 0.6064 -0.8297 25 1 -0.3633 -1.0217 -0.1104 26 1 -0.3633 0.4152 0.9400 27 1 1.6828 1.8825 0.9110 28 1 1.6133 1.9092 -0.8682 29 1 3.9221 2.3398 -0.0030 30 1 3.8385 0.8645 -0.9965 31 1 3.8385 -1.3084 0.1675 32 1 3.9228 -1.2989 1.9458 33 1 1.9305 -2.7838 1.8820 34 1 0.3804 -2.1826 1.2464 35 1 2.1742 -2.2463 -0.9030 36 1 2.1675 -4.0871 -2.3385 37 1 1.9885 -6.6622 -1.1923 38 1 0.3747 -6.1972 -1.7817 39 1 1.3190 -5.7721 -4.0344 40 1 2.9331 -6.2370 -3.4456 41 1 2.5839 -8.0657 -6.6231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599024706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:06 Heat of formation + Delta-G solvation = -100.000462 kcal Electronic energy + Delta-G solvation = -21092.464427 eV Core-core repulsion = 17813.261102 eV Total energy + Delta-G solvation = -3279.203326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30723 -40.40338 -37.29931 -36.53297 -35.44529 -34.77721 -32.58511 -31.17618 -29.80595 -27.65151 -26.34023 -25.14871 -23.68699 -22.91435 -22.05483 -20.82829 -19.47494 -18.40652 -17.62316 -17.53928 -16.90982 -16.59840 -16.49816 -16.20667 -15.89413 -15.76552 -15.21125 -15.03364 -14.88958 -14.70556 -14.25754 -13.95414 -13.34331 -13.19948 -13.16135 -12.90905 -12.88366 -12.51092 -12.41443 -12.20470 -12.03441 -11.65936 -11.52909 -11.48245 -11.18502 -10.71154 -10.58685 -10.26436 -9.64815 -9.45374 -8.22290 -6.32472 1.43124 1.43739 1.55173 1.81093 2.21925 2.42859 2.72231 2.87673 3.12503 3.45917 3.67633 3.72053 3.95321 4.10794 4.28087 4.28898 4.49596 4.52652 4.55205 4.59342 4.62585 4.66047 4.71385 4.78176 4.89087 4.89494 4.99715 5.04938 5.34378 5.50568 5.55118 5.62046 5.81307 5.88214 5.92507 6.09507 6.15097 6.19587 6.80859 7.18203 7.36846 7.65240 8.89648 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.032838 B = 0.003095 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.478171 B = 9044.015227 C = 9273.248632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.021 3.979 4 C 0.056 3.944 5 O -0.400 6.400 6 C 0.068 3.932 7 C 0.047 3.953 8 H 0.073 0.927 9 C 0.150 3.850 10 N -0.721 5.721 11 C 0.698 3.302 12 O -0.642 6.642 13 N -0.734 5.734 14 C 0.162 3.838 15 C 0.024 3.976 16 C -0.546 4.546 17 H 0.059 0.941 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.266 1.266 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.411 0.589 36 H 0.406 0.594 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 21.480 11.591 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.107 4.107 4 C -0.020 4.020 5 O -0.319 6.319 6 C -0.009 4.009 7 C -0.062 4.062 8 H 0.091 0.909 9 C 0.025 3.975 10 N -0.379 5.379 11 C 0.397 3.603 12 O -0.525 6.525 13 N -0.389 5.389 14 C 0.037 3.963 15 C -0.013 4.013 16 C -0.585 4.585 17 H 0.077 0.923 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.191 1.191 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.248 0.752 36 H 0.241 0.759 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.378 20.721 11.919 23.907 hybrid contribution -0.366 -0.226 -0.486 0.649 sum 0.013 20.495 11.432 23.468 Atomic orbital electron populations 1.22413 0.86176 1.02500 1.01297 1.62193 1.08989 1.14262 1.41628 1.22849 0.96240 0.88965 1.02603 1.22878 0.92403 0.97206 0.89553 1.87990 1.70292 1.24178 1.49404 1.22745 0.91090 0.83771 1.03339 1.22535 0.96615 0.93112 0.93916 0.90901 1.21150 1.00262 0.91582 0.84471 1.44812 1.67325 1.08466 1.17247 1.16159 0.79061 0.82506 0.82531 1.90857 1.52148 1.62955 1.46543 1.45206 1.66684 1.12974 1.13987 1.21048 0.98602 0.79159 0.97472 1.19123 0.95957 0.95872 0.90389 1.21472 1.41137 0.96780 0.99073 0.92299 1.25867 0.94674 1.02807 0.95822 1.70060 1.43358 1.38160 1.05045 0.85445 0.78171 0.79227 0.78206 1.19771 1.20520 1.19060 0.90115 0.92025 0.94756 0.93789 0.87917 0.86576 0.92130 0.92349 0.87460 0.91093 0.92068 0.75161 0.75939 0.93884 0.93942 0.97364 0.97326 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.09 127.69 1.16 1.51 16 2 N -0.54 -8.20 4.14 -895.85 -3.71 -11.91 16 3 C 0.02 0.25 5.66 86.32 0.49 0.74 16 4 C 0.06 0.72 7.01 72.02 0.50 1.23 16 5 O -0.40 -7.18 10.83 -148.98 -1.61 -8.79 16 6 C 0.07 1.12 6.20 72.02 0.45 1.57 16 7 C 0.05 0.76 2.26 44.91 0.10 0.86 16 8 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 9 C 0.15 3.15 4.66 86.38 0.40 3.55 16 10 N -0.72 -17.79 5.05 -478.53 -2.42 -20.20 16 11 C 0.70 24.35 8.57 179.06 1.53 25.89 16 12 O -0.64 -27.87 16.34 -4.00 -0.07 -27.94 16 13 N -0.73 -26.31 5.56 -478.54 -2.66 -28.97 16 14 C 0.16 7.14 5.61 86.38 0.48 7.63 16 15 C 0.02 1.23 5.09 29.85 0.15 1.38 16 16 C -0.55 -30.80 9.11 25.60 0.23 -30.57 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.39 5.46 84.65 0.46 0.86 16 19 N -0.93 -54.55 13.29 21.45 0.28 -54.27 16 20 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H 0.08 1.01 8.11 -2.39 -0.02 0.99 16 25 H 0.06 1.12 6.55 -2.39 -0.02 1.10 16 26 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.10 0.94 8.12 -2.39 -0.02 0.92 16 29 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 1.03 7.27 -2.39 -0.02 1.01 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.37 6.77 -2.38 -0.02 1.35 16 35 H 0.41 8.68 7.44 -92.71 -0.69 7.99 16 36 H 0.41 12.52 8.49 -92.71 -0.79 11.73 16 37 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -68.95 333.12 -2.63 -71.58 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.45 Total: 20.00 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 5.97 Total: 14.63 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -8.50 Total: -115.35 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.68 Total: -36.73 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.95 -2.63 -71.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599024706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.417 kcal (2) G-P(sol) polarization free energy of solvation -68.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds