Wall clock time and date at job start Mon Mar 30 2020 04:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99770 * 2 1 4 4 O 1.20821 * 120.00494 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99519 * 180.02562 * 3 2 1 6 6 O 1.42897 * 110.76619 * 327.07823 * 5 3 2 7 7 C 1.42904 * 114.00014 * 302.06156 * 6 5 3 8 8 C 1.55390 * 110.84911 * 90.34803 * 5 3 2 9 9 C 1.54909 * 101.74352 * 153.85984 * 8 5 3 10 10 N 1.47846 * 104.79681 * 323.01769 * 9 8 5 11 11 C 1.46900 * 111.00132 * 146.36064 * 10 9 8 12 12 C 1.52999 * 109.46657 * 49.15934 * 11 10 9 13 13 C 1.53001 * 109.46944 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47293 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00064 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99995 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46911 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47363 * 120.00117 * 18 16 14 21 21 H 1.48506 * 109.47049 * 240.00139 * 18 16 14 22 22 C 1.47446 * 108.56332 * 24.09561 * 10 9 8 23 23 H 1.09005 * 109.46976 * 300.00032 * 1 2 3 24 24 H 1.09005 * 109.47245 * 60.00020 * 1 2 3 25 25 H 1.09002 * 109.47133 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47475 * 64.85289 * 7 6 5 27 27 H 1.09004 * 109.47325 * 184.85525 * 7 6 5 28 28 H 1.09003 * 109.46866 * 304.85134 * 7 6 5 29 29 H 1.09000 * 110.87355 * 35.77301 * 8 5 3 30 30 H 1.09005 * 111.05945 * 272.02634 * 8 5 3 31 31 H 1.08997 * 110.37288 * 204.18499 * 9 8 5 32 32 H 1.09001 * 110.37358 * 81.84902 * 9 8 5 33 33 H 1.08998 * 109.46981 * 169.15991 * 11 10 9 34 34 H 1.08999 * 109.47070 * 289.15771 * 11 10 9 35 35 H 1.08998 * 109.47472 * 299.99757 * 12 11 10 36 36 H 1.08999 * 109.47513 * 60.00109 * 12 11 10 37 37 H 1.09003 * 109.47002 * 299.99673 * 13 12 11 38 38 H 1.08998 * 109.47672 * 59.99592 * 13 12 11 39 39 H 0.97000 * 119.99950 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.88719 * 118.41840 * 22 10 9 41 41 H 1.08999 * 109.88876 * 239.44103 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 8 4.1312 0.1811 0.7251 7 6 3.6937 0.0967 2.0829 8 6 4.1176 1.3128 -1.4529 9 6 5.4655 2.0513 -1.2593 10 7 5.1928 3.0691 -0.2222 11 6 6.3741 3.2892 0.6229 12 6 7.6017 3.5076 -0.2637 13 6 8.8322 3.7361 0.6165 14 6 10.0416 3.9506 -0.2566 15 1 9.9425 3.9267 -1.3318 16 6 11.2745 4.1784 0.3171 17 7 11.3951 4.2080 1.6264 18 14 12.7735 4.4449 -0.7652 19 1 12.3738 4.3632 -2.1931 20 1 13.3520 5.7842 -0.4884 21 1 13.7863 3.3985 -0.4745 22 6 4.0424 2.6213 0.5840 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.6241 -0.1112 2.1078 27 1 4.2315 -0.7052 2.5888 28 1 3.8919 1.0421 2.5880 29 1 3.4529 1.8783 -2.1059 30 1 4.2761 0.3055 -1.8382 31 1 5.7730 2.5298 -2.1891 32 1 6.2329 1.3569 -0.9171 33 1 6.2155 4.1686 1.2470 34 1 6.5344 2.4175 1.2573 35 1 7.7603 2.6282 -0.8878 36 1 7.4414 4.3793 -0.8981 37 1 8.6739 4.6155 1.2409 38 1 8.9924 2.8643 1.2507 39 1 12.2624 4.3686 2.0300 40 1 4.3465 2.4882 1.6222 41 1 3.2394 3.3560 0.5243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599563026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:27 Heat of formation + Delta-G solvation = -125.358491 kcal Electronic energy + Delta-G solvation = -21577.910656 eV Core-core repulsion = 18265.314972 eV Total energy + Delta-G solvation = -3312.595683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30144 -39.27517 -37.09030 -36.70847 -34.03031 -32.30542 -30.35363 -29.17901 -28.01061 -27.05145 -25.99034 -23.52709 -22.87321 -21.35933 -20.20378 -19.65317 -18.57044 -17.33564 -16.82058 -16.45918 -15.95094 -15.50563 -15.13981 -14.77390 -14.67455 -14.30829 -14.03056 -13.59672 -13.39863 -12.93832 -12.69783 -12.54111 -12.30204 -12.06756 -11.75561 -11.66409 -11.49089 -11.33498 -11.10371 -11.08434 -10.81140 -10.71798 -10.51594 -10.39826 -9.98149 -9.67703 -9.32662 -9.02171 -8.32318 -8.10619 -5.97467 -3.99315 1.76718 2.28467 3.28343 3.33097 3.40455 3.44918 4.04984 4.24026 4.32718 4.48547 4.53014 4.76306 4.83702 4.98693 5.04790 5.13157 5.20978 5.23144 5.38139 5.38582 5.48352 5.63208 5.71612 5.75497 5.86539 5.98180 6.01977 6.05356 6.30370 6.65974 6.70179 6.77555 7.02722 7.20608 7.32317 7.40894 7.70920 7.85391 8.03005 8.46210 9.08043 9.64625 11.14076 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.043699 B = 0.003355 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.587615 B = 8342.643815 C = 8494.866587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.348 6.348 3 C 0.451 3.549 4 O -0.494 6.494 5 C 0.103 3.897 6 O -0.350 6.350 7 C 0.018 3.982 8 C -0.109 4.109 9 C 0.047 3.953 10 N -0.520 5.520 11 C 0.049 3.951 12 C -0.110 4.110 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.027 3.973 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.070 0.930 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.118 -9.781 -1.916 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.264 6.264 3 C 0.292 3.708 4 O -0.381 6.381 5 C 0.061 3.939 6 O -0.268 6.268 7 C -0.078 4.078 8 C -0.147 4.147 9 C -0.081 4.081 10 N -0.244 5.244 11 C -0.078 4.078 12 C -0.148 4.148 13 C -0.015 4.015 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.102 4.102 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.200 -9.111 -2.085 23.168 hybrid contribution 0.611 -0.422 0.207 0.771 sum -20.588 -9.532 -1.878 22.765 Atomic orbital electron populations 1.23325 0.76578 1.03829 1.02614 1.86639 1.23203 1.33046 1.83507 1.24410 0.92237 0.81685 0.72475 1.90678 1.66585 1.36278 1.44519 1.22893 0.84185 0.89913 0.96927 1.88060 1.67732 1.47313 1.23711 1.22980 0.99757 1.02463 0.82571 1.22885 0.98176 1.02815 0.90823 1.23079 0.95146 0.92883 0.96944 1.63873 1.05424 1.41998 1.13068 1.22556 0.89585 1.00253 0.95455 1.21743 0.93765 1.00788 0.98507 1.19068 0.90776 0.96930 0.94775 1.21287 0.92853 1.48283 0.93128 0.92613 1.25031 0.99057 0.95529 0.94939 1.69976 1.24161 1.50207 1.09265 0.86544 0.82965 0.77712 0.80839 1.19712 1.21039 1.21072 1.23505 0.96351 0.92948 0.97360 0.91897 0.91749 0.87942 0.93605 0.88431 0.93235 0.88859 0.88616 0.89101 0.91784 0.90915 0.94807 0.93128 0.92492 0.96574 0.96781 0.93111 0.91173 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.29 16 2 O -0.35 -3.80 9.43 -44.18 -0.42 -4.22 16 3 C 0.45 5.64 5.90 36.01 0.21 5.86 16 4 O -0.49 -7.09 15.35 -18.75 -0.29 -7.38 16 5 C 0.10 1.32 0.88 -89.81 -0.08 1.24 16 6 O -0.35 -4.53 10.28 -48.11 -0.49 -5.03 16 7 C 0.02 0.19 10.36 101.05 1.05 1.24 16 8 C -0.11 -1.29 6.25 -24.46 -0.15 -1.44 16 9 C 0.05 0.65 5.30 -2.30 -0.01 0.64 16 10 N -0.52 -8.12 5.31 -231.25 -1.23 -9.35 16 11 C 0.05 0.87 4.82 -3.82 -0.02 0.85 16 12 C -0.11 -2.29 4.82 -26.73 -0.13 -2.42 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.03 0.37 5.98 -2.83 -0.02 0.36 16 23 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 24 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.43 6.70 -51.93 -0.35 0.09 16 27 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.50 6.23 -51.93 -0.32 0.17 16 29 H 0.09 1.02 8.04 -51.93 -0.42 0.61 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.96 7.02 -51.93 -0.36 0.60 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.03 0.61 7.96 -51.93 -0.41 0.19 16 35 H 0.05 1.02 6.48 -51.93 -0.34 0.69 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.07 0.94 5.47 -51.93 -0.28 0.66 16 41 H 0.10 1.46 6.77 -51.93 -0.35 1.11 16 LS Contribution 331.05 15.07 4.99 4.99 Total: -1.00 -32.44 331.05 -6.96 -39.41 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -6.61 Total: -3.23 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 1.37 Total: -5.56 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.49 Total: -35.80 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -1.20 Total: -16.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.44 -6.96 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599563026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.952 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds