Wall clock time and date at job start Mon Mar 30 2020 04:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 116.99770 * 2 1 4 4 O 1.20821 * 120.00494 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99519 * 180.02562 * 3 2 1 6 6 O 1.42897 * 110.76619 * 327.07823 * 5 3 2 7 7 C 1.42904 * 114.00014 * 302.06156 * 6 5 3 8 8 C 1.55390 * 110.84911 * 90.34803 * 5 3 2 9 9 C 1.54909 * 101.74352 * 153.85984 * 8 5 3 10 10 N 1.47846 * 104.79681 * 323.01769 * 9 8 5 11 11 C 1.46900 * 111.00132 * 146.36064 * 10 9 8 12 12 C 1.52999 * 109.46657 * 49.15934 * 11 10 9 13 13 C 1.53001 * 109.46944 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47293 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00064 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99995 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46911 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47363 * 120.00117 * 18 16 14 21 21 H 1.48506 * 109.47049 * 240.00139 * 18 16 14 22 22 C 1.47446 * 108.56332 * 24.09561 * 10 9 8 23 23 H 1.09005 * 109.46976 * 300.00032 * 1 2 3 24 24 H 1.09005 * 109.47245 * 60.00020 * 1 2 3 25 25 H 1.09002 * 109.47133 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47475 * 64.85289 * 7 6 5 27 27 H 1.09004 * 109.47325 * 184.85525 * 7 6 5 28 28 H 1.09003 * 109.46866 * 304.85134 * 7 6 5 29 29 H 1.09000 * 110.87355 * 35.77301 * 8 5 3 30 30 H 1.09005 * 111.05945 * 272.02634 * 8 5 3 31 31 H 1.08997 * 110.37288 * 204.18499 * 9 8 5 32 32 H 1.09001 * 110.37358 * 81.84902 * 9 8 5 33 33 H 1.08998 * 109.46981 * 169.15991 * 11 10 9 34 34 H 1.08999 * 109.47070 * 289.15771 * 11 10 9 35 35 H 1.08998 * 109.47472 * 299.99757 * 12 11 10 36 36 H 1.08999 * 109.47513 * 60.00109 * 12 11 10 37 37 H 1.09003 * 109.47002 * 299.99673 * 13 12 11 38 38 H 1.08998 * 109.47672 * 59.99592 * 13 12 11 39 39 H 0.97000 * 119.99950 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.88719 * 118.41840 * 22 10 9 41 41 H 1.08999 * 109.88876 * 239.44103 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 8 4.1312 0.1811 0.7251 7 6 3.6937 0.0967 2.0829 8 6 4.1176 1.3128 -1.4529 9 6 5.4655 2.0513 -1.2593 10 7 5.1928 3.0691 -0.2222 11 6 6.3741 3.2892 0.6229 12 6 7.6017 3.5076 -0.2637 13 6 8.8322 3.7361 0.6165 14 6 10.0416 3.9506 -0.2566 15 1 9.9425 3.9267 -1.3318 16 6 11.2745 4.1784 0.3171 17 7 11.3951 4.2080 1.6264 18 14 12.7735 4.4449 -0.7652 19 1 12.3738 4.3632 -2.1931 20 1 13.3520 5.7842 -0.4884 21 1 13.7863 3.3985 -0.4745 22 6 4.0424 2.6213 0.5840 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.6241 -0.1112 2.1078 27 1 4.2315 -0.7052 2.5888 28 1 3.8919 1.0421 2.5880 29 1 3.4529 1.8783 -2.1059 30 1 4.2761 0.3055 -1.8382 31 1 5.7730 2.5298 -2.1891 32 1 6.2329 1.3569 -0.9171 33 1 6.2155 4.1686 1.2470 34 1 6.5344 2.4175 1.2573 35 1 7.7603 2.6282 -0.8878 36 1 7.4414 4.3793 -0.8981 37 1 8.6739 4.6155 1.2409 38 1 8.9924 2.8643 1.2507 39 1 12.2624 4.3686 2.0300 40 1 4.3465 2.4882 1.6222 41 1 3.2394 3.3560 0.5243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599563026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:27 Heat of formation + Delta-G solvation = -147.215664 kcal Electronic energy + Delta-G solvation = -21578.858454 eV Core-core repulsion = 18265.314972 eV Total energy + Delta-G solvation = -3313.543481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.26744 -40.30384 -38.16299 -37.68647 -35.85580 -34.03923 -31.86704 -30.21315 -28.95167 -28.15859 -27.39005 -25.05800 -23.99513 -22.89115 -21.22373 -21.16987 -19.52052 -18.52139 -18.24060 -17.68904 -17.16033 -16.58073 -16.49218 -16.35257 -15.72416 -15.54746 -15.32692 -14.55109 -14.43932 -14.38182 -14.06895 -13.88116 -13.37939 -13.24962 -13.13110 -13.06096 -12.73278 -12.68617 -12.46377 -12.32281 -12.21395 -12.11845 -11.88799 -11.67707 -11.51813 -11.37712 -11.10775 -10.88407 -10.54430 -9.35922 -8.18938 -6.29631 0.81159 1.41349 1.41602 1.43856 1.55234 2.36939 2.42326 2.91529 3.14485 3.19349 3.34447 3.58486 4.01142 4.11887 4.21328 4.23133 4.26202 4.26820 4.27673 4.35745 4.45720 4.64442 4.66770 4.68871 4.73673 4.75463 4.84496 4.91008 5.01414 5.12266 5.14166 5.22929 5.53073 5.74267 5.76664 5.86546 5.88886 5.96562 6.27542 6.49508 6.87363 7.39578 8.93318 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.043699 B = 0.003355 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.587615 B = 8342.643815 C = 8494.866587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.351 6.351 3 C 0.458 3.542 4 O -0.517 6.517 5 C 0.103 3.897 6 O -0.363 6.363 7 C 0.012 3.988 8 C -0.102 4.102 9 C 0.043 3.957 10 N -0.526 5.526 11 C 0.062 3.938 12 C -0.094 4.094 13 C 0.026 3.974 14 C -0.540 4.540 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.278 1.278 22 C 0.027 3.973 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.134 0.866 26 H 0.054 0.946 27 H 0.113 0.887 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.057 0.943 36 H 0.054 0.946 37 H -0.009 1.009 38 H -0.010 1.010 39 H 0.263 0.737 40 H 0.072 0.928 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.771 -10.698 -3.139 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.267 6.267 3 C 0.300 3.700 4 O -0.405 6.405 5 C 0.061 3.939 6 O -0.282 6.282 7 C -0.083 4.083 8 C -0.139 4.139 9 C -0.084 4.084 10 N -0.250 5.250 11 C -0.066 4.066 12 C -0.132 4.132 13 C -0.011 4.011 14 C -0.578 4.578 15 H 0.079 0.921 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.101 4.101 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.152 0.848 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.876 -10.047 -3.315 24.300 hybrid contribution 0.739 -0.182 0.640 0.994 sum -21.137 -10.229 -2.675 23.634 Atomic orbital electron populations 1.23657 0.74518 1.06009 1.02828 1.86618 1.25181 1.31955 1.82938 1.24222 0.91992 0.81832 0.71927 1.90671 1.67014 1.37070 1.45767 1.22795 0.84712 0.89154 0.97272 1.88044 1.68126 1.47177 1.24831 1.23156 1.00563 1.03047 0.81567 1.22890 0.96845 1.03599 0.90587 1.23127 0.96261 0.92523 0.96492 1.63814 1.04758 1.43262 1.13147 1.22274 0.89433 0.99957 0.94947 1.21483 0.92875 1.00904 0.97901 1.18961 0.92786 0.94676 0.94711 1.21718 0.94032 1.48386 0.93688 0.92130 1.25993 1.02556 0.95025 0.96380 1.70104 1.25223 1.50950 1.11204 0.85391 0.78617 0.77777 0.79224 1.18493 1.20427 1.20355 1.23451 0.95447 0.93844 0.97381 0.91709 0.91578 0.84826 0.92770 0.86875 0.93364 0.87830 0.86935 0.88521 0.92944 0.91335 0.95218 0.92441 0.92683 0.99056 0.99121 0.92800 0.90984 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.56 113.37 1.20 1.48 16 2 O -0.35 -6.96 9.43 -46.67 -0.44 -7.40 16 3 C 0.46 10.80 5.90 71.24 0.42 11.22 16 4 O -0.52 -14.26 15.35 21.98 0.34 -13.92 16 5 C 0.10 2.50 0.88 -10.27 -0.01 2.49 16 6 O -0.36 -8.92 10.28 -136.67 -1.40 -10.33 16 7 C 0.01 0.24 10.36 113.37 1.17 1.41 16 8 C -0.10 -2.22 6.25 32.07 0.20 -2.02 16 9 C 0.04 1.16 5.30 86.77 0.46 1.62 16 10 N -0.53 -16.13 5.31 -885.53 -4.71 -20.84 16 11 C 0.06 2.21 4.82 86.30 0.42 2.62 16 12 C -0.09 -3.94 4.82 30.59 0.15 -3.79 16 13 C 0.03 1.41 4.97 29.85 0.15 1.56 16 14 C -0.54 -31.17 9.11 25.60 0.23 -30.93 16 15 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 16 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 17 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 18 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 C 0.03 0.73 5.98 86.65 0.52 1.25 16 23 H 0.06 0.81 8.13 -2.38 -0.02 0.79 16 24 H 0.07 0.83 8.13 -2.38 -0.02 0.81 16 25 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.94 6.70 -2.39 -0.02 0.93 16 27 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.05 0.93 6.23 -2.39 -0.01 0.92 16 29 H 0.10 2.06 8.04 -2.39 -0.02 2.04 16 30 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.05 1.54 7.02 -2.39 -0.02 1.52 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.03 1.08 7.96 -2.39 -0.02 1.06 16 35 H 0.06 2.32 6.48 -2.39 -0.02 2.30 16 36 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 37 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.07 1.91 5.47 -2.39 -0.01 1.90 16 41 H 0.10 2.77 6.77 -2.39 -0.02 2.75 16 Total: -1.00 -69.16 331.05 2.47 -66.69 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.00 Total: 9.05 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: 5.37 Total: -12.75 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -4.42 Total: -78.03 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.51 Total: -31.65 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.16 2.47 -66.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599563026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.530 kcal (2) G-P(sol) polarization free energy of solvation -69.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds