Wall clock time and date at job start Mon Mar 30 2020 05:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47330 * 2 1 4 4 C 1.53000 * 109.46953 * 120.00370 * 2 1 3 5 5 C 1.52997 * 109.47060 * 304.99470 * 4 2 1 6 6 H 1.09008 * 109.47017 * 55.00082 * 5 4 2 7 7 O 1.42903 * 109.47386 * 295.00486 * 5 4 2 8 8 C 1.52994 * 109.47404 * 175.00005 * 5 4 2 9 9 N 1.46900 * 109.47557 * 184.99766 * 8 5 4 10 10 C 1.46903 * 111.00425 * 180.02562 * 9 8 5 11 11 C 1.52997 * 109.47269 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47202 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47042 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99943 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99585 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99899 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00078 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46766 * 90.00255 * 17 15 13 19 19 H 1.48498 * 109.47172 * 210.00073 * 17 15 13 20 20 H 1.48492 * 109.47484 * 330.00617 * 17 15 13 21 21 C 1.53006 * 109.46777 * 239.99717 * 2 1 3 22 22 C 1.52993 * 117.49539 * 128.62519 * 21 2 1 23 23 C 1.52994 * 60.00120 * 252.51062 * 22 21 2 24 24 H 1.09002 * 109.46957 * 300.00422 * 1 2 3 25 25 H 1.09004 * 109.46951 * 59.99888 * 1 2 3 26 26 H 1.09001 * 109.47815 * 180.02562 * 1 2 3 27 27 H 0.96702 * 113.99557 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47398 * 64.99639 * 4 2 1 29 29 H 1.09001 * 109.47194 * 184.99820 * 4 2 1 30 30 H 0.96705 * 113.99520 * 300.00083 * 7 5 4 31 31 H 1.09001 * 109.47698 * 305.00111 * 8 5 4 32 32 H 1.09009 * 109.47010 * 65.00116 * 8 5 4 33 33 H 1.00900 * 111.00327 * 303.95939 * 9 8 5 34 34 H 1.09000 * 109.46956 * 300.00228 * 10 9 8 35 35 H 1.09002 * 109.46516 * 60.00203 * 10 9 8 36 36 H 1.09000 * 109.47401 * 300.00338 * 11 10 9 37 37 H 1.09000 * 109.47148 * 59.99754 * 11 10 9 38 38 H 1.09000 * 109.46780 * 299.99819 * 12 11 10 39 39 H 1.08999 * 109.47038 * 59.99403 * 12 11 10 40 40 H 0.96994 * 120.00001 * 179.97438 * 16 15 13 41 41 H 1.09001 * 115.54890 * 274.33293 * 21 2 1 42 42 H 1.09005 * 117.50201 * 0.02562 * 22 21 2 43 43 H 1.08998 * 117.50131 * 145.02106 * 22 21 2 44 44 H 1.08998 * 117.50155 * 252.51365 * 23 22 21 45 45 H 1.08998 * 117.50061 * 107.49286 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.4300 -0.0763 2.4953 6 1 0.3434 -0.0736 2.4081 7 8 1.9015 1.2673 2.6155 8 6 1.8400 -0.8736 3.7350 9 7 1.1591 -0.3269 4.9163 10 6 1.5302 -1.0691 6.1285 11 6 0.8024 -0.4724 7.3347 12 6 1.1894 -1.2450 8.5973 13 6 0.4720 -0.6576 9.7854 14 1 -0.1937 0.1825 9.6530 15 6 0.6648 -1.1934 11.0411 16 7 0.0383 -0.6811 12.0778 17 14 1.8145 -2.6477 11.2696 18 1 3.1887 -2.1544 11.5409 19 1 1.3494 -3.4714 12.4142 20 1 1.8198 -3.4733 10.0354 21 6 2.0399 -0.7214 -1.2493 22 6 3.0740 0.0050 -2.1117 23 6 1.6357 -0.1496 -2.6096 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 2.9704 1.4235 -0.0004 28 1 1.7515 -1.7716 1.2056 29 1 3.1263 -0.6445 1.2951 30 1 2.8622 1.3411 2.6973 31 1 1.5586 -1.9186 3.6046 32 1 2.9191 -0.8024 3.8723 33 1 1.3528 0.6577 5.0220 34 1 1.2469 -2.1155 6.0148 35 1 2.6070 -0.9988 6.2821 36 1 1.0852 0.5741 7.4485 37 1 -0.2744 -0.5430 7.1808 38 1 0.9068 -2.2916 8.4837 39 1 2.2661 -1.1740 8.7510 40 1 0.1737 -1.0582 12.9611 41 1 2.1265 -1.8046 -1.1642 42 1 3.3915 0.9966 -1.7889 43 1 3.8414 -0.6003 -2.5942 44 1 1.4567 -0.8566 -3.4196 45 1 1.0064 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601968125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:46 Heat of formation + Delta-G solvation = -96.761768 kcal Electronic energy + Delta-G solvation = -20902.494233 eV Core-core repulsion = 17726.971691 eV Total energy + Delta-G solvation = -3175.522542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.01067 -37.88674 -35.88044 -35.14848 -33.40900 -32.67686 -31.44953 -29.31691 -27.21073 -25.47133 -23.44832 -22.68361 -21.93080 -21.41684 -20.20816 -19.99776 -17.29077 -16.93574 -16.63098 -16.31663 -15.77735 -15.25836 -14.87752 -14.73245 -14.26481 -14.00751 -13.83806 -13.30863 -12.97144 -12.71598 -12.57527 -12.49309 -12.18472 -11.89680 -11.80845 -11.71337 -11.64432 -11.40564 -10.92552 -10.88842 -10.86769 -10.75019 -10.53827 -10.33100 -9.96946 -9.84296 -9.69478 -9.44043 -9.13928 -8.51106 -8.23378 -6.01178 -3.98754 3.31649 3.33352 3.38884 3.42833 3.76239 4.12378 4.32038 4.40575 4.44091 4.47393 4.52411 4.67961 4.74851 4.91368 5.03954 5.14265 5.21816 5.23929 5.32485 5.36596 5.42612 5.50020 5.55758 5.56970 5.70548 5.72828 5.73771 5.76644 5.83386 5.89244 6.14871 6.18781 6.56804 6.60145 6.94219 7.21486 7.38203 7.43365 7.46467 7.56091 7.63327 7.83309 8.58457 9.04740 9.61329 11.12435 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.051339 B = 0.002491 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.266800 B =11235.738643 C =11414.467653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.169 3.831 3 O -0.540 6.540 4 C -0.174 4.174 5 C 0.110 3.890 6 H 0.111 0.889 7 O -0.543 6.543 8 C 0.026 3.974 9 N -0.686 5.686 10 C 0.057 3.943 11 C -0.100 4.100 12 C -0.013 4.013 13 C -0.518 4.518 14 H 0.072 0.928 15 C 0.064 3.936 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.186 4.186 22 C -0.180 4.180 23 C -0.169 4.169 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.368 0.632 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.364 0.636 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.346 0.654 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.015 0.985 39 H 0.008 0.992 40 H 0.262 0.738 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 -0.838 -29.959 30.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.128 3.872 3 O -0.346 6.346 4 C -0.212 4.212 5 C 0.050 3.950 6 H 0.129 0.871 7 O -0.347 6.347 8 C -0.104 4.104 9 N -0.318 5.318 10 C -0.072 4.072 11 C -0.138 4.138 12 C -0.051 4.051 13 C -0.556 4.556 14 H 0.090 0.910 15 C -0.137 4.137 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.205 4.205 22 C -0.217 4.217 23 C -0.206 4.206 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.215 0.785 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.209 0.791 31 H 0.094 0.906 32 H 0.043 0.957 33 H 0.164 0.836 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.033 0.967 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.380 -0.967 -29.907 30.402 hybrid contribution 2.817 -1.009 0.447 3.025 sum 8.197 -1.976 -29.460 30.642 Atomic orbital electron populations 1.21808 0.92375 1.02246 1.03352 1.20515 0.94728 0.81708 0.90284 1.86670 1.25877 1.25360 1.96673 1.22947 1.01105 1.01107 0.96087 1.22037 1.00267 0.81862 0.90810 0.87100 1.86714 1.26098 1.25917 1.95922 1.22685 0.95895 0.99848 0.91999 1.60457 1.60875 1.07947 1.02529 1.22158 0.97144 0.98201 0.89690 1.21441 1.00097 0.99339 0.92878 1.19545 0.96106 0.95879 0.93541 1.21163 1.26911 1.16945 0.90599 0.90983 1.25054 0.95737 0.96888 0.96004 1.69920 1.43200 1.41872 0.99373 0.86756 0.81277 0.83276 0.77820 1.20405 1.21408 1.19080 1.23172 1.04842 0.99656 0.92828 1.22960 0.92682 1.02174 1.03851 1.22879 0.97967 1.03270 0.96465 0.90884 0.91999 0.91316 0.78512 0.90106 0.91392 0.79069 0.90648 0.95659 0.83565 0.91670 0.96005 0.92999 0.91895 0.96669 0.97346 0.92795 0.87532 0.88254 0.89022 0.89067 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.20 37.16 0.30 -0.88 16 2 C 0.17 1.27 0.90 -90.62 -0.08 1.19 16 3 O -0.54 -4.62 10.59 -54.84 -0.58 -5.20 16 4 C -0.17 -1.25 4.22 -26.73 -0.11 -1.36 16 5 C 0.11 1.05 2.88 -26.74 -0.08 0.97 16 6 H 0.11 1.23 6.06 -51.92 -0.31 0.92 16 7 O -0.54 -5.59 11.31 -54.84 -0.62 -6.21 16 8 C 0.03 0.29 5.36 -3.83 -0.02 0.27 16 9 N -0.69 -9.87 6.50 -113.78 -0.74 -10.61 16 10 C 0.06 0.94 5.68 -3.82 -0.02 0.92 16 11 C -0.10 -2.04 5.41 -26.73 -0.14 -2.18 16 12 C -0.01 -0.31 4.04 -27.88 -0.11 -0.43 16 13 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 14 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 17 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 21 C -0.19 -1.22 5.15 -90.62 -0.47 -1.69 16 22 C -0.18 -1.06 9.73 -26.74 -0.26 -1.32 16 23 C -0.17 -1.11 9.67 -26.74 -0.26 -1.37 16 24 H 0.07 0.72 6.23 -51.93 -0.32 0.39 16 25 H 0.06 0.52 7.29 -51.93 -0.38 0.14 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.37 2.11 7.56 45.56 0.34 2.45 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.36 2.61 9.05 45.56 0.41 3.02 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.27 8.14 -51.92 -0.42 -0.16 16 33 H 0.35 4.97 8.29 -39.29 -0.33 4.64 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 39 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.11 0.66 8.11 -51.93 -0.42 0.24 16 42 H 0.10 0.55 6.38 -51.93 -0.33 0.22 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.73 7.61 -51.93 -0.40 0.33 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -32.66 354.18 -8.92 -41.58 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.74 Total: 4.92 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.68 Total: -19.59 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.03 Total: -38.26 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.20 Total: -11.41 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.66 -8.92 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601968125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.182 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds