Wall clock time and date at job start Mon Mar 30 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47330 * 2 1 4 4 C 1.53000 * 109.46953 * 120.00370 * 2 1 3 5 5 C 1.52997 * 109.47060 * 304.99470 * 4 2 1 6 6 H 1.09008 * 109.47017 * 55.00082 * 5 4 2 7 7 O 1.42903 * 109.47386 * 295.00486 * 5 4 2 8 8 C 1.52994 * 109.47404 * 175.00005 * 5 4 2 9 9 N 1.46900 * 109.47557 * 184.99766 * 8 5 4 10 10 C 1.46903 * 111.00425 * 180.02562 * 9 8 5 11 11 C 1.52997 * 109.47269 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47202 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47042 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99943 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99585 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99899 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00078 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46766 * 90.00255 * 17 15 13 19 19 H 1.48498 * 109.47172 * 210.00073 * 17 15 13 20 20 H 1.48492 * 109.47484 * 330.00617 * 17 15 13 21 21 C 1.53006 * 109.46777 * 239.99717 * 2 1 3 22 22 C 1.52993 * 117.49539 * 128.62519 * 21 2 1 23 23 C 1.52994 * 60.00120 * 252.51062 * 22 21 2 24 24 H 1.09002 * 109.46957 * 300.00422 * 1 2 3 25 25 H 1.09004 * 109.46951 * 59.99888 * 1 2 3 26 26 H 1.09001 * 109.47815 * 180.02562 * 1 2 3 27 27 H 0.96702 * 113.99557 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47398 * 64.99639 * 4 2 1 29 29 H 1.09001 * 109.47194 * 184.99820 * 4 2 1 30 30 H 0.96705 * 113.99520 * 300.00083 * 7 5 4 31 31 H 1.09001 * 109.47698 * 305.00111 * 8 5 4 32 32 H 1.09009 * 109.47010 * 65.00116 * 8 5 4 33 33 H 1.00900 * 111.00327 * 303.95939 * 9 8 5 34 34 H 1.09000 * 109.46956 * 300.00228 * 10 9 8 35 35 H 1.09002 * 109.46516 * 60.00203 * 10 9 8 36 36 H 1.09000 * 109.47401 * 300.00338 * 11 10 9 37 37 H 1.09000 * 109.47148 * 59.99754 * 11 10 9 38 38 H 1.09000 * 109.46780 * 299.99819 * 12 11 10 39 39 H 1.08999 * 109.47038 * 59.99403 * 12 11 10 40 40 H 0.96994 * 120.00001 * 179.97438 * 16 15 13 41 41 H 1.09001 * 115.54890 * 274.33293 * 21 2 1 42 42 H 1.09005 * 117.50201 * 0.02562 * 22 21 2 43 43 H 1.08998 * 117.50131 * 145.02106 * 22 21 2 44 44 H 1.08998 * 117.50155 * 252.51365 * 23 22 21 45 45 H 1.08998 * 117.50061 * 107.49286 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.4300 -0.0763 2.4953 6 1 0.3434 -0.0736 2.4081 7 8 1.9015 1.2673 2.6155 8 6 1.8400 -0.8736 3.7350 9 7 1.1591 -0.3269 4.9163 10 6 1.5302 -1.0691 6.1285 11 6 0.8024 -0.4724 7.3347 12 6 1.1894 -1.2450 8.5973 13 6 0.4720 -0.6576 9.7854 14 1 -0.1937 0.1825 9.6530 15 6 0.6648 -1.1934 11.0411 16 7 0.0383 -0.6811 12.0778 17 14 1.8145 -2.6477 11.2696 18 1 3.1887 -2.1544 11.5409 19 1 1.3494 -3.4714 12.4142 20 1 1.8198 -3.4733 10.0354 21 6 2.0399 -0.7214 -1.2493 22 6 3.0740 0.0050 -2.1117 23 6 1.6357 -0.1496 -2.6096 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 2.9704 1.4235 -0.0004 28 1 1.7515 -1.7716 1.2056 29 1 3.1263 -0.6445 1.2951 30 1 2.8622 1.3411 2.6973 31 1 1.5586 -1.9186 3.6046 32 1 2.9191 -0.8024 3.8723 33 1 1.3528 0.6577 5.0220 34 1 1.2469 -2.1155 6.0148 35 1 2.6070 -0.9988 6.2821 36 1 1.0852 0.5741 7.4485 37 1 -0.2744 -0.5430 7.1808 38 1 0.9068 -2.2916 8.4837 39 1 2.2661 -1.1740 8.7510 40 1 0.1737 -1.0582 12.9611 41 1 2.1265 -1.8046 -1.1642 42 1 3.3915 0.9966 -1.7889 43 1 3.8414 -0.6003 -2.5942 44 1 1.4567 -0.8566 -3.4196 45 1 1.0064 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601968125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:45 Heat of formation + Delta-G solvation = -121.390937 kcal Electronic energy + Delta-G solvation = -20903.562234 eV Core-core repulsion = 17726.971691 eV Total energy + Delta-G solvation = -3176.590543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61048 -38.69777 -37.09498 -35.78473 -35.20440 -33.58134 -33.06247 -30.33022 -28.53065 -26.58473 -24.47326 -23.33422 -23.13016 -22.29761 -21.65855 -20.74916 -18.91475 -17.90454 -17.61237 -17.09689 -16.65236 -16.35984 -15.98619 -15.81193 -15.48970 -15.05482 -14.99856 -14.65801 -14.15821 -13.81418 -13.70922 -13.48166 -13.20210 -13.11946 -12.84360 -12.57741 -12.46934 -12.42252 -12.32762 -12.01226 -11.80633 -11.63570 -11.54480 -11.46711 -11.36077 -11.32541 -11.13448 -10.87282 -10.76788 -10.33161 -9.33634 -8.29530 -6.34264 1.35404 1.38214 1.50523 2.36458 2.84249 3.04737 3.05376 3.42727 3.68773 3.71843 3.86607 3.98643 4.10676 4.13090 4.15037 4.27090 4.28905 4.44064 4.47653 4.53964 4.67235 4.73689 4.76767 4.79630 4.88767 4.90085 4.96990 4.97917 5.02665 5.10073 5.15916 5.16572 5.28443 5.30570 5.45134 5.51169 5.59827 5.66015 6.10926 6.29612 6.47390 6.74083 6.96333 6.98723 7.30146 8.87585 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.051339 B = 0.002491 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.266800 B =11235.738643 C =11414.467653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.170 3.830 3 O -0.558 6.558 4 C -0.164 4.164 5 C 0.117 3.883 6 H 0.091 0.909 7 O -0.560 6.560 8 C 0.028 3.972 9 N -0.697 5.697 10 C 0.071 3.929 11 C -0.092 4.092 12 C -0.009 4.009 13 C -0.536 4.536 14 H 0.027 0.973 15 C -0.001 4.001 16 N -0.953 5.953 17 Si 0.957 3.043 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.244 1.244 21 C -0.186 4.186 22 C -0.173 4.173 23 C -0.178 4.178 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.379 0.621 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.377 0.623 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.344 0.656 34 H 0.070 0.930 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.021 0.979 39 H 0.020 0.980 40 H 0.266 0.734 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.623 -2.762 -31.626 33.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.129 3.871 3 O -0.365 6.365 4 C -0.202 4.202 5 C 0.058 3.942 6 H 0.109 0.891 7 O -0.366 6.366 8 C -0.102 4.102 9 N -0.329 5.329 10 C -0.059 4.059 11 C -0.130 4.130 12 C -0.047 4.047 13 C -0.574 4.574 14 H 0.046 0.954 15 C -0.198 4.198 16 N -0.594 5.594 17 Si 0.780 3.220 18 H -0.190 1.190 19 H -0.209 1.209 20 H -0.168 1.168 21 C -0.204 4.204 22 C -0.210 4.210 23 C -0.215 4.215 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.228 0.772 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.225 0.775 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.163 0.837 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.746 -2.882 -31.607 32.670 hybrid contribution 1.997 -0.281 0.954 2.231 sum 9.743 -3.163 -30.652 32.319 Atomic orbital electron populations 1.21828 0.93497 1.02598 1.02075 1.20477 0.93962 0.81569 0.91065 1.86647 1.27097 1.26042 1.96759 1.22846 1.01851 1.01156 0.94373 1.21889 0.99384 0.81650 0.91291 0.89091 1.86685 1.27529 1.26380 1.95995 1.22763 0.96385 1.00101 0.90911 1.60395 1.61910 1.07829 1.02739 1.21886 0.96938 0.98150 0.88877 1.21275 0.99621 0.98747 0.93385 1.19487 0.95952 0.96174 0.93109 1.21529 1.26751 1.16080 0.92995 0.95445 1.26127 0.97732 1.00487 0.95434 1.70085 1.45205 1.43955 1.00144 0.85553 0.78807 0.79000 0.78628 1.19014 1.20932 1.16782 1.23119 1.05184 0.99963 0.92128 1.23028 0.92437 1.02379 1.03134 1.22895 0.98558 1.03111 0.96942 0.92790 0.92592 0.90209 0.77190 0.89172 0.89754 0.77485 0.90124 0.94250 0.83717 0.91188 0.95000 0.93758 0.93516 0.96052 0.96199 0.92483 0.86684 0.88014 0.87971 0.88281 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.20 71.98 0.59 -1.74 16 2 C 0.17 2.30 0.90 -10.79 -0.01 2.29 16 3 O -0.56 -8.82 10.59 -130.23 -1.38 -10.19 16 4 C -0.16 -1.95 4.22 30.59 0.13 -1.82 16 5 C 0.12 2.05 2.88 30.59 0.09 2.14 16 6 H 0.09 1.98 6.06 -2.38 -0.01 1.96 16 7 O -0.56 -10.76 11.31 -130.23 -1.47 -12.23 16 8 C 0.03 0.55 5.36 86.30 0.46 1.01 16 9 N -0.70 -18.96 6.50 -513.88 -3.34 -22.30 16 10 C 0.07 2.20 5.68 86.30 0.49 2.69 16 11 C -0.09 -3.74 5.41 30.59 0.17 -3.58 16 12 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 13 C -0.54 -32.04 9.66 25.60 0.25 -31.79 16 14 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 15 C 0.00 -0.09 5.47 84.66 0.46 0.37 16 16 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 17 Si 0.96 44.81 27.47 68.60 1.88 46.69 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.24 -10.52 6.54 99.48 0.65 -9.87 16 21 C -0.19 -2.05 5.15 -10.80 -0.06 -2.10 16 22 C -0.17 -1.67 9.73 30.59 0.30 -1.38 16 23 C -0.18 -2.11 9.67 30.59 0.30 -1.81 16 24 H 0.05 1.08 6.23 -2.39 -0.01 1.06 16 25 H 0.05 0.95 7.29 -2.38 -0.02 0.93 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.38 3.65 7.56 -74.06 -0.56 3.09 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.38 4.65 9.05 -74.05 -0.67 3.98 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.34 9.53 8.29 -89.69 -0.74 8.79 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 39 H 0.02 0.90 7.57 -2.39 -0.02 0.89 16 40 H 0.27 15.88 8.31 -92.71 -0.77 15.10 16 41 H 0.12 1.10 8.11 -2.39 -0.02 1.08 16 42 H 0.10 0.93 6.38 -2.38 -0.02 0.91 16 43 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 1.23 7.61 -2.39 -0.02 1.21 16 Total: -1.00 -71.30 354.18 -1.78 -73.07 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -1.05 Total: 21.96 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 3.29 Total: -36.04 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -3.04 Total: -83.27 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -2.85 Total: -22.43 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -71.30 -1.78 -73.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601968125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.317 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds