Wall clock time and date at job start Mon Mar 30 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46644 * 2 1 4 4 N 1.46898 * 109.47388 * 240.00314 * 2 1 3 5 5 C 1.46895 * 111.00132 * 193.80495 * 4 2 1 6 6 C 1.50710 * 109.46690 * 66.04870 * 5 4 2 7 7 H 1.07997 * 120.00220 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99700 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00060 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99872 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47163 * 89.99217 * 10 8 6 12 12 H 1.48496 * 109.46971 * 209.99555 * 10 8 6 13 13 H 1.48504 * 109.47046 * 329.99331 * 10 8 6 14 14 C 1.46901 * 110.99890 * 69.84896 * 4 2 1 15 15 C 1.53003 * 109.47059 * 195.99708 * 14 4 2 16 16 O 1.42900 * 109.47037 * 65.34232 * 15 14 4 17 17 C 1.42894 * 114.00558 * 184.93038 * 16 15 14 18 18 C 1.52997 * 109.47743 * 179.97438 * 17 16 15 19 19 H 1.08999 * 109.82190 * 305.57248 * 18 17 16 20 20 C 1.54380 * 109.83381 * 184.58549 * 18 17 16 21 21 C 1.55302 * 102.25524 * 219.13051 * 20 18 17 22 22 C 1.54947 * 100.93925 * 34.13410 * 21 20 18 23 23 O 1.43237 * 109.82754 * 66.45129 * 18 17 16 24 24 H 1.09001 * 109.47281 * 183.41526 * 1 2 3 25 25 H 1.09005 * 109.47387 * 303.41801 * 1 2 3 26 26 H 1.08997 * 109.47359 * 63.41494 * 1 2 3 27 27 H 1.08997 * 109.47294 * 119.99721 * 2 1 3 28 28 H 1.08997 * 109.47047 * 299.99873 * 3 2 1 29 29 H 1.08996 * 109.47107 * 60.00618 * 3 2 1 30 30 H 1.09000 * 109.46552 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47041 * 186.03990 * 5 4 2 32 32 H 1.08992 * 109.47476 * 306.04934 * 5 4 2 33 33 H 0.96998 * 120.00391 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.47838 * 316.00329 * 14 4 2 35 35 H 1.09000 * 109.46901 * 76.00603 * 14 4 2 36 36 H 1.09000 * 109.47127 * 185.34077 * 15 14 4 37 37 H 1.09000 * 109.47460 * 305.34094 * 15 14 4 38 38 H 1.09007 * 109.47140 * 300.00238 * 17 16 15 39 39 H 1.09001 * 109.46981 * 59.99541 * 17 16 15 40 40 H 1.09004 * 110.84689 * 337.32558 * 20 18 17 41 41 H 1.09003 * 110.84576 * 100.93873 * 20 18 17 42 42 H 1.08997 * 111.12539 * 276.21389 * 21 20 18 43 43 H 1.08999 * 111.16424 * 152.06610 * 21 20 18 44 44 H 1.09004 * 110.30927 * 204.63847 * 22 21 20 45 45 H 1.09004 * 110.39539 * 82.51485 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 3.4508 -1.0020 -1.0812 6 6 3.6577 -2.0071 0.0226 7 1 2.8109 -2.3783 0.5806 8 6 4.9283 -2.4518 0.3206 9 7 5.9596 -1.9994 -0.3586 10 14 5.1849 -3.6970 1.6892 11 1 5.1036 -5.0705 1.1304 12 1 6.5215 -3.4903 2.3023 13 1 4.1335 -3.5202 2.7229 14 6 1.7498 0.0958 -2.4094 15 6 1.8972 -0.7971 -3.6431 16 8 0.8857 -1.8064 -3.6242 17 6 1.0012 -2.7649 -4.6776 18 6 -0.1267 -3.7918 -4.5589 19 1 -0.1222 -4.2323 -3.5619 20 6 0.0560 -4.8959 -5.6223 21 6 -1.4050 -5.1602 -6.0776 22 6 -2.0108 -3.7388 -5.9617 23 8 -1.3879 -3.1587 -4.8046 24 1 -0.3634 -1.0258 0.0612 25 1 -0.3634 0.5660 0.8578 26 1 -0.3634 0.4599 -0.9190 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 3.8118 -1.4166 -2.0224 32 1 4.0019 -0.0904 -0.8505 33 1 6.8534 -2.3125 -0.1492 34 1 0.7351 0.4916 -2.3664 35 1 2.4593 0.9209 -2.4713 36 1 1.7906 -0.1927 -4.5439 37 1 2.8803 -1.2678 -3.6356 38 1 0.9314 -2.2576 -5.6399 39 1 1.9632 -3.2722 -4.6034 40 1 0.6626 -4.5370 -6.4539 41 1 0.4928 -5.7916 -5.1805 42 1 -1.9060 -5.8568 -5.4054 43 1 -1.4379 -5.5186 -7.1065 44 1 -3.0901 -3.7979 -5.8208 45 1 -1.7776 -3.1528 -6.8508 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685995337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:32 Heat of formation + Delta-G solvation = -94.993559 kcal Electronic energy + Delta-G solvation = -21978.455531 eV Core-core repulsion = 18803.009664 eV Total energy + Delta-G solvation = -3175.445867 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.51001 -38.03802 -36.58260 -32.72637 -32.23998 -31.57262 -30.32436 -28.58095 -26.50182 -25.89960 -25.00851 -22.50232 -21.86853 -21.53880 -20.97208 -18.49360 -17.07803 -16.33250 -16.06789 -15.91274 -15.46741 -15.04909 -14.54680 -14.36495 -13.93670 -13.59139 -13.38764 -13.24761 -12.75285 -12.44758 -12.18291 -11.98458 -11.83330 -11.75204 -11.39494 -11.33045 -11.17006 -11.08336 -10.95789 -10.88309 -10.65409 -10.61709 -10.48071 -10.23178 -9.87235 -9.57139 -9.40374 -9.06887 -8.99261 -8.36621 -7.00988 -5.97238 -3.96701 3.35213 3.40951 3.45390 3.76911 4.12588 4.38420 4.47706 4.72285 4.89339 4.98909 5.12777 5.20356 5.38349 5.40639 5.51960 5.55623 5.59408 5.64207 5.67760 5.79372 5.80309 5.82837 5.87288 5.89842 6.02019 6.11966 6.19443 6.22695 6.28764 6.32531 6.42337 6.53684 6.67318 6.94246 7.00885 7.09375 7.40778 7.49148 7.76341 7.91015 8.21408 8.37214 8.68288 9.11731 9.66799 11.13746 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.004947 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.146011 B = 5658.735389 C = 6681.305974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.081 3.919 3 C -0.180 4.180 4 N -0.519 5.519 5 C 0.189 3.811 6 C -0.499 4.499 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.055 3.945 15 C 0.070 3.930 16 O -0.357 6.357 17 C 0.054 3.946 18 C 0.085 3.915 19 H 0.092 0.908 20 C -0.149 4.149 21 C -0.156 4.156 22 C 0.046 3.954 23 O -0.367 6.367 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.028 0.972 32 H -0.008 1.008 33 H 0.259 0.741 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.059 -1.444 -10.840 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.239 4.239 4 N -0.243 5.243 5 C 0.064 3.936 6 C -0.538 4.538 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.542 5.542 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.073 4.073 15 C -0.007 4.007 16 O -0.276 6.276 17 C -0.024 4.024 18 C 0.027 3.973 19 H 0.110 0.890 20 C -0.187 4.187 21 C -0.193 4.193 22 C -0.030 4.030 23 O -0.286 6.286 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.010 0.990 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.343 -1.748 -10.623 16.378 hybrid contribution 1.190 -0.056 0.329 1.236 sum -11.153 -1.804 -10.294 15.284 Atomic orbital electron populations 1.21818 0.96046 1.01622 1.00003 1.21583 0.93923 0.91659 0.95630 1.22456 1.02084 0.98879 1.00520 1.62236 1.20791 1.41824 0.99493 1.19776 0.81181 0.95188 0.97428 1.21185 0.92431 1.23552 1.16626 0.91907 1.24965 0.96035 0.96849 0.96791 1.69956 0.98794 1.44295 1.41124 0.86547 0.77254 0.81669 0.82234 1.20755 1.21448 1.19857 1.22037 1.00429 0.93779 0.91078 1.22572 0.91705 0.89769 0.96683 1.88031 1.50787 1.39560 1.49172 1.22796 0.97427 0.91204 0.90941 1.22774 0.83532 0.91337 0.99654 0.89004 1.23114 0.97418 0.99196 0.98950 1.23259 0.95653 0.98034 1.02385 1.23374 0.97962 0.92271 0.89436 1.88566 1.32847 1.61020 1.46146 0.92326 0.93736 0.93409 0.89092 0.93534 0.93385 0.92253 0.95392 0.99020 0.93103 0.91157 0.94433 0.94624 0.92780 0.94064 0.92522 0.90383 0.89541 0.90273 0.90071 0.89991 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.28 37.16 0.34 -2.03 16 2 C 0.08 1.63 2.76 -67.71 -0.19 1.44 16 3 C -0.18 -3.26 8.44 37.16 0.31 -2.94 16 4 N -0.52 -11.54 4.33 -228.08 -0.99 -12.52 16 5 C 0.19 4.95 4.48 -4.97 -0.02 4.93 16 6 C -0.50 -14.15 8.32 -34.43 -0.29 -14.43 16 7 H 0.06 1.79 7.23 -52.49 -0.38 1.41 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 10 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.06 1.06 3.95 -3.82 -0.02 1.04 16 15 C 0.07 1.28 6.10 37.16 0.23 1.50 16 16 O -0.36 -6.86 10.28 -37.80 -0.39 -7.25 16 17 C 0.05 0.83 5.47 37.16 0.20 1.04 16 18 C 0.08 1.18 3.81 -26.01 -0.10 1.08 16 19 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 20 C -0.15 -1.50 6.54 -24.79 -0.16 -1.66 16 21 C -0.16 -1.34 7.16 -24.48 -0.18 -1.52 16 22 C 0.05 0.48 7.78 38.19 0.30 0.78 16 23 O -0.37 -5.50 11.00 -37.80 -0.42 -5.91 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.79 6.34 -51.93 -0.33 0.47 16 27 H 0.09 2.04 6.60 -51.93 -0.34 1.70 16 28 H 0.05 0.77 6.64 -51.93 -0.34 0.42 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.19 6.74 -51.93 -0.35 0.84 16 31 H 0.03 0.78 6.33 -51.93 -0.33 0.45 16 32 H -0.01 -0.22 6.60 -51.93 -0.34 -0.56 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.07 1.27 6.08 -51.93 -0.32 0.95 16 35 H 0.04 0.70 7.16 -51.93 -0.37 0.33 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 1.07 6.44 -51.93 -0.33 0.74 16 38 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.71 7.85 -51.93 -0.41 0.31 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -31.54 349.30 -8.53 -40.06 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -8.05 Total: -1.09 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 0.34 Total: -9.32 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: -0.25 Total: -38.64 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.80 Total: -13.16 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.54 -8.53 -40.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.929 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds