Wall clock time and date at job start Mon Mar 30 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46644 * 2 1 4 4 N 1.46898 * 109.47388 * 240.00314 * 2 1 3 5 5 C 1.46895 * 111.00132 * 193.80495 * 4 2 1 6 6 C 1.50710 * 109.46690 * 66.04870 * 5 4 2 7 7 H 1.07997 * 120.00220 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99700 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00060 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99872 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47163 * 89.99217 * 10 8 6 12 12 H 1.48496 * 109.46971 * 209.99555 * 10 8 6 13 13 H 1.48504 * 109.47046 * 329.99331 * 10 8 6 14 14 C 1.46901 * 110.99890 * 69.84896 * 4 2 1 15 15 C 1.53003 * 109.47059 * 195.99708 * 14 4 2 16 16 O 1.42900 * 109.47037 * 65.34232 * 15 14 4 17 17 C 1.42894 * 114.00558 * 184.93038 * 16 15 14 18 18 C 1.52997 * 109.47743 * 179.97438 * 17 16 15 19 19 H 1.08999 * 109.82190 * 305.57248 * 18 17 16 20 20 C 1.54380 * 109.83381 * 184.58549 * 18 17 16 21 21 C 1.55302 * 102.25524 * 219.13051 * 20 18 17 22 22 C 1.54947 * 100.93925 * 34.13410 * 21 20 18 23 23 O 1.43237 * 109.82754 * 66.45129 * 18 17 16 24 24 H 1.09001 * 109.47281 * 183.41526 * 1 2 3 25 25 H 1.09005 * 109.47387 * 303.41801 * 1 2 3 26 26 H 1.08997 * 109.47359 * 63.41494 * 1 2 3 27 27 H 1.08997 * 109.47294 * 119.99721 * 2 1 3 28 28 H 1.08997 * 109.47047 * 299.99873 * 3 2 1 29 29 H 1.08996 * 109.47107 * 60.00618 * 3 2 1 30 30 H 1.09000 * 109.46552 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47041 * 186.03990 * 5 4 2 32 32 H 1.08992 * 109.47476 * 306.04934 * 5 4 2 33 33 H 0.96998 * 120.00391 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.47838 * 316.00329 * 14 4 2 35 35 H 1.09000 * 109.46901 * 76.00603 * 14 4 2 36 36 H 1.09000 * 109.47127 * 185.34077 * 15 14 4 37 37 H 1.09000 * 109.47460 * 305.34094 * 15 14 4 38 38 H 1.09007 * 109.47140 * 300.00238 * 17 16 15 39 39 H 1.09001 * 109.46981 * 59.99541 * 17 16 15 40 40 H 1.09004 * 110.84689 * 337.32558 * 20 18 17 41 41 H 1.09003 * 110.84576 * 100.93873 * 20 18 17 42 42 H 1.08997 * 111.12539 * 276.21389 * 21 20 18 43 43 H 1.08999 * 111.16424 * 152.06610 * 21 20 18 44 44 H 1.09004 * 110.30927 * 204.63847 * 22 21 20 45 45 H 1.09004 * 110.39539 * 82.51485 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 3.4508 -1.0020 -1.0812 6 6 3.6577 -2.0071 0.0226 7 1 2.8109 -2.3783 0.5806 8 6 4.9283 -2.4518 0.3206 9 7 5.9596 -1.9994 -0.3586 10 14 5.1849 -3.6970 1.6892 11 1 5.1036 -5.0705 1.1304 12 1 6.5215 -3.4903 2.3023 13 1 4.1335 -3.5202 2.7229 14 6 1.7498 0.0958 -2.4094 15 6 1.8972 -0.7971 -3.6431 16 8 0.8857 -1.8064 -3.6242 17 6 1.0012 -2.7649 -4.6776 18 6 -0.1267 -3.7918 -4.5589 19 1 -0.1222 -4.2323 -3.5619 20 6 0.0560 -4.8959 -5.6223 21 6 -1.4050 -5.1602 -6.0776 22 6 -2.0108 -3.7388 -5.9617 23 8 -1.3879 -3.1587 -4.8046 24 1 -0.3634 -1.0258 0.0612 25 1 -0.3634 0.5660 0.8578 26 1 -0.3634 0.4599 -0.9190 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 3.8118 -1.4166 -2.0224 32 1 4.0019 -0.0904 -0.8505 33 1 6.8534 -2.3125 -0.1492 34 1 0.7351 0.4916 -2.3664 35 1 2.4593 0.9209 -2.4713 36 1 1.7906 -0.1927 -4.5439 37 1 2.8803 -1.2678 -3.6356 38 1 0.9314 -2.2576 -5.6399 39 1 1.9632 -3.2722 -4.6034 40 1 0.6626 -4.5370 -6.4539 41 1 0.4928 -5.7916 -5.1805 42 1 -1.9060 -5.8568 -5.4054 43 1 -1.4379 -5.5186 -7.1065 44 1 -3.0901 -3.7979 -5.8208 45 1 -1.7776 -3.1528 -6.8508 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685995337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:32 Heat of formation + Delta-G solvation = -116.291622 kcal Electronic energy + Delta-G solvation = -21979.379084 eV Core-core repulsion = 18803.009664 eV Total energy + Delta-G solvation = -3176.369420 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51652 -39.63339 -38.03363 -34.87503 -33.24254 -32.94745 -31.60676 -30.25279 -27.96373 -27.71252 -26.15038 -24.43173 -23.25470 -22.56792 -22.02676 -20.18371 -18.39938 -18.07025 -17.44848 -17.15809 -16.83586 -16.66871 -16.12974 -15.74907 -15.46546 -15.02761 -14.59814 -14.52586 -14.16992 -14.01866 -13.86028 -13.35762 -13.28984 -13.01349 -12.73141 -12.63857 -12.61193 -12.50086 -12.44751 -12.16599 -12.11237 -12.03133 -11.97753 -11.69390 -11.64068 -11.28254 -11.11018 -10.58784 -10.44343 -10.39758 -8.80067 -8.17558 -6.25589 1.39821 1.40933 1.52207 2.41354 2.71013 3.01322 3.14331 3.34119 3.58820 3.88527 3.97035 4.10547 4.18505 4.18971 4.30281 4.37522 4.40101 4.43131 4.49158 4.54201 4.59689 4.70911 4.74667 4.79258 4.82951 4.85452 4.90631 4.93545 4.97530 5.03047 5.06272 5.14357 5.26763 5.27308 5.29404 5.47796 5.58792 5.70471 6.11656 6.14321 6.41461 6.50990 6.78430 6.91525 7.43186 8.93204 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.015329 B = 0.004947 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.146011 B = 5658.735389 C = 6681.305974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.074 3.926 3 C -0.170 4.170 4 N -0.530 5.530 5 C 0.209 3.791 6 C -0.516 4.516 7 H 0.056 0.944 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.056 3.944 15 C 0.073 3.927 16 O -0.383 6.383 17 C 0.049 3.951 18 C 0.082 3.918 19 H 0.068 0.932 20 C -0.144 4.144 21 C -0.146 4.146 22 C 0.036 3.964 23 O -0.399 6.399 24 H 0.044 0.956 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.003 0.997 32 H -0.033 1.033 33 H 0.263 0.737 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 -1.810 -11.399 17.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.034 4.034 3 C -0.229 4.229 4 N -0.255 5.255 5 C 0.083 3.917 6 C -0.554 4.554 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.191 1.191 14 C -0.073 4.073 15 C -0.004 4.004 16 O -0.303 6.303 17 C -0.028 4.028 18 C 0.024 3.976 19 H 0.086 0.914 20 C -0.182 4.182 21 C -0.183 4.183 22 C -0.040 4.040 23 O -0.319 6.319 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.021 0.979 32 H -0.015 1.015 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.112 0.888 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.828 -2.110 -11.191 17.914 hybrid contribution 1.591 0.093 0.458 1.658 sum -12.237 -2.017 -10.733 16.402 Atomic orbital electron populations 1.21707 0.93350 1.01429 1.01777 1.21648 0.95933 0.92323 0.93528 1.22332 1.00096 0.97822 1.02635 1.62173 1.17905 1.43815 1.01563 1.19376 0.83471 0.93477 0.95425 1.21444 0.92529 1.24191 1.17282 0.92620 1.25817 0.95643 0.98720 0.99193 1.70074 0.99269 1.45536 1.42633 0.85480 0.77446 0.79092 0.79201 1.19999 1.20659 1.19105 1.22123 1.01325 0.93770 0.90038 1.22529 0.90410 0.89897 0.97586 1.87987 1.50867 1.40412 1.50997 1.23005 0.98023 0.91018 0.90713 1.22760 0.83071 0.91823 0.99919 0.91448 1.23124 0.98918 0.98017 0.98098 1.23256 0.94027 0.96980 1.04049 1.23650 0.98559 0.93379 0.88395 1.88521 1.33211 1.62034 1.48108 0.93681 0.90894 0.92440 0.92111 0.91753 0.90871 0.95160 0.97920 1.01534 0.92832 0.89415 0.94010 0.91510 0.95307 0.92345 0.92948 0.89151 0.88726 0.89986 0.87327 0.88760 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.28 71.98 0.67 -3.46 16 2 C 0.07 2.99 2.76 44.92 0.12 3.12 16 3 C -0.17 -6.01 8.44 71.98 0.61 -5.40 16 4 N -0.53 -24.09 4.33 -875.53 -3.79 -27.88 16 5 C 0.21 11.40 4.48 85.56 0.38 11.78 16 6 C -0.52 -30.19 8.32 25.60 0.21 -29.98 16 7 H 0.06 3.27 7.23 -2.91 -0.02 3.24 16 8 C 0.00 0.23 5.46 84.66 0.46 0.69 16 9 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 10 Si 0.96 45.43 29.54 68.60 2.03 47.45 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 C 0.06 2.11 3.95 86.30 0.34 2.45 16 15 C 0.07 2.68 6.10 71.98 0.44 3.12 16 16 O -0.38 -14.89 10.28 -146.52 -1.51 -16.40 16 17 C 0.05 1.53 5.47 71.98 0.39 1.92 16 18 C 0.08 2.29 3.81 31.06 0.12 2.41 16 19 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 20 C -0.14 -2.67 6.54 31.85 0.21 -2.46 16 21 C -0.15 -2.14 7.16 32.05 0.23 -1.91 16 22 C 0.04 0.68 7.78 72.65 0.56 1.25 16 23 O -0.40 -11.74 11.00 -146.52 -1.61 -13.35 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 26 H 0.06 1.78 6.34 -2.39 -0.02 1.77 16 27 H 0.06 2.79 6.60 -2.39 -0.02 2.78 16 28 H 0.06 2.02 6.64 -2.39 -0.02 2.01 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.03 1.22 6.74 -2.39 -0.02 1.21 16 31 H 0.00 0.16 6.33 -2.39 -0.02 0.15 16 32 H -0.03 -1.92 6.60 -2.39 -0.02 -1.94 16 33 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.09 3.03 6.08 -2.39 -0.01 3.01 16 35 H 0.04 1.55 7.16 -2.39 -0.02 1.54 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.03 1.19 6.44 -2.39 -0.02 1.18 16 38 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.09 1.45 7.85 -2.39 -0.02 1.44 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -69.90 349.30 1.09 -68.81 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.94 Total: 14.52 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 4.75 Total: -16.48 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -3.50 Total: -84.55 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -3.12 Total: -29.75 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.90 1.09 -68.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.486 kcal (2) G-P(sol) polarization free energy of solvation -69.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds