Wall clock time and date at job start Mon Mar 30 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46889 * 2 1 4 4 N 1.46907 * 109.47111 * 179.97438 * 3 2 1 5 5 C 1.46897 * 111.00032 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.54368 * 34.82809 * 5 4 3 7 7 C 1.53181 * 109.61904 * 274.59993 * 5 4 3 8 8 C 1.53085 * 109.16284 * 183.11201 * 7 5 4 9 9 O 1.42899 * 109.41977 * 57.60527 * 8 7 5 10 10 C 1.42899 * 114.10223 * 298.84691 * 9 8 7 11 11 C 1.53097 * 109.41483 * 61.15124 * 10 9 8 12 12 H 1.09003 * 109.52052 * 182.42992 * 11 10 9 13 13 O 1.42901 * 109.52233 * 62.30109 * 11 10 9 14 14 C 1.42902 * 113.99910 * 97.08757 * 13 11 10 15 15 H 1.08997 * 109.47167 * 30.71797 * 14 13 11 16 16 C 1.52994 * 109.47264 * 270.71958 * 14 13 11 17 17 C 1.52997 * 109.46972 * 150.71577 * 14 13 11 18 18 C 1.50699 * 109.47238 * 295.00473 * 17 14 13 19 19 H 1.07997 * 119.99995 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00080 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99883 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00301 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46827 * 89.99606 * 22 20 18 24 24 H 1.48499 * 109.47313 * 209.99712 * 22 20 18 25 25 H 1.48504 * 109.47114 * 330.00171 * 22 20 18 26 26 H 1.09004 * 109.47574 * 300.00181 * 1 2 3 27 27 H 1.09006 * 109.47138 * 60.00507 * 1 2 3 28 28 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47288 * 239.99175 * 2 1 3 30 30 H 1.09006 * 109.47138 * 119.99493 * 2 1 3 31 31 H 1.08994 * 109.47387 * 60.00116 * 3 2 1 32 32 H 1.08998 * 109.47016 * 299.99409 * 3 2 1 33 33 H 1.00902 * 110.99541 * 303.95598 * 4 3 2 34 34 H 1.09000 * 109.51768 * 63.20134 * 7 5 4 35 35 H 1.09000 * 109.52278 * 303.01606 * 7 5 4 36 36 H 1.09004 * 109.47756 * 297.62265 * 8 7 5 37 37 H 1.08995 * 109.48014 * 177.59797 * 8 7 5 38 38 H 1.09000 * 109.48428 * 181.13554 * 10 9 8 39 39 H 1.09006 * 109.47893 * 301.15892 * 10 9 8 40 40 H 1.09008 * 109.47268 * 305.75695 * 16 14 13 41 41 H 1.09000 * 109.47559 * 65.75504 * 16 14 13 42 42 H 1.09004 * 109.47243 * 185.76018 * 16 14 13 43 43 H 1.09005 * 109.47112 * 55.00303 * 17 14 13 44 44 H 1.08996 * 109.47310 * 174.99765 * 17 14 13 45 45 H 0.97007 * 120.00516 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.8140 0.0000 6 1 3.3786 3.4569 0.5860 7 6 4.1122 3.3347 -1.4385 8 6 4.7340 4.7336 -1.4339 9 8 6.0255 4.6776 -0.8250 10 6 6.0106 4.2426 0.5361 11 6 5.4402 2.8238 0.6107 12 1 5.3878 2.5066 1.6522 13 8 6.2842 1.9307 -0.1188 14 6 7.2222 1.2230 0.6945 15 1 6.7980 1.0669 1.6863 16 6 8.5112 2.0384 0.8138 17 6 7.5328 -0.1312 0.0538 18 6 6.2885 -0.9815 0.0481 19 1 5.3684 -0.5948 0.4606 20 6 6.3251 -2.2534 -0.4827 21 7 7.4458 -2.7244 -0.9846 22 14 4.7831 -3.3076 -0.4892 23 1 4.0283 -3.0728 -1.7463 24 1 5.1626 -4.7405 -0.3999 25 1 3.9323 -2.9474 0.6735 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.8702 0.9165 0.7822 34 1 3.1092 3.3832 -1.8623 35 1 4.7293 2.6639 -2.0363 36 1 4.0953 5.4134 -0.8698 37 1 4.8304 5.0919 -2.4588 38 1 7.0268 4.2469 0.9303 39 1 5.3889 4.9160 1.1261 40 1 8.8806 2.2819 -0.1825 41 1 8.3094 2.9590 1.3614 42 1 9.2620 1.4554 1.3472 43 1 7.8735 0.0210 -0.9704 44 1 8.3133 -0.6332 0.6255 45 1 7.4715 -3.6192 -1.3585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686577656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:46 Heat of formation + Delta-G solvation = -108.207017 kcal Electronic energy + Delta-G solvation = -22873.608775 eV Core-core repulsion = 19697.589930 eV Total energy + Delta-G solvation = -3176.018845 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.65306 -36.88623 -36.39749 -33.61546 -32.84802 -31.14494 -30.52825 -29.38456 -27.26381 -25.53649 -23.40507 -23.01239 -22.82697 -21.07482 -20.18068 -19.58470 -16.39448 -16.27860 -16.16318 -15.77372 -15.27129 -14.99048 -14.76817 -14.41715 -13.94146 -13.68742 -13.47590 -13.26092 -12.80817 -12.44776 -12.31251 -12.06852 -11.80274 -11.59307 -11.52529 -11.40785 -11.20117 -11.12725 -10.84009 -10.69983 -10.63725 -10.53611 -10.27932 -10.20746 -9.96645 -9.62319 -9.18362 -8.96008 -8.41330 -8.21554 -8.00108 -5.84450 -3.82394 3.42140 3.48004 3.49419 3.98461 4.25377 4.50154 4.59673 4.87587 5.08534 5.12774 5.14198 5.21233 5.33109 5.43788 5.45416 5.52225 5.57115 5.58880 5.62359 5.69792 5.72406 5.83153 5.89594 5.93005 6.01650 6.07759 6.10139 6.17835 6.22324 6.34226 6.38388 6.48358 6.71697 6.82943 7.02115 7.33433 7.42523 7.65349 7.72183 7.83296 8.15028 8.29097 8.58583 9.21572 9.78844 11.27782 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.008710 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.513794 B = 3213.845832 C = 5133.249575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.063 3.937 4 N -0.666 5.666 5 C 0.095 3.905 6 H 0.041 0.959 7 C -0.139 4.139 8 C 0.063 3.937 9 O -0.369 6.369 10 C 0.044 3.956 11 C 0.053 3.947 12 H 0.059 0.941 13 O -0.327 6.327 14 C 0.089 3.911 15 H 0.042 0.958 16 C -0.173 4.173 17 C 0.025 3.975 18 C -0.491 4.491 19 H 0.061 0.939 20 C 0.053 3.947 21 N -0.903 5.903 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.276 1.276 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.067 0.933 33 H 0.349 0.651 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.057 0.943 43 H 0.025 0.975 44 H 0.026 0.974 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 13.039 4.056 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.067 4.067 4 N -0.298 5.298 5 C -0.016 4.016 6 H 0.058 0.942 7 C -0.177 4.177 8 C -0.015 4.015 9 O -0.288 6.288 10 C -0.034 4.034 11 C -0.007 4.007 12 H 0.077 0.923 13 O -0.245 6.245 14 C 0.032 3.968 15 H 0.060 0.940 16 C -0.231 4.231 17 C -0.012 4.012 18 C -0.529 4.529 19 H 0.079 0.921 20 C -0.146 4.146 21 N -0.543 5.543 22 Si 0.718 3.282 23 H -0.208 1.208 24 H -0.219 1.219 25 H -0.201 1.201 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.922 12.819 3.005 15.905 hybrid contribution -1.252 -0.475 1.303 1.869 sum -10.174 12.344 4.308 16.566 Atomic orbital electron populations 1.21718 0.96002 1.01535 1.01290 1.21526 0.94957 0.96681 1.03363 1.22011 0.88474 0.96719 0.99464 1.60259 1.05775 1.12381 1.51415 1.21585 0.93350 0.90092 0.96537 0.94160 1.22124 1.01292 0.96923 0.97379 1.22569 0.84767 0.95941 0.98174 1.87952 1.28340 1.86978 1.25488 1.23197 1.02204 0.94097 0.83879 1.22851 0.91169 0.91311 0.95408 0.92267 1.88195 1.48379 1.55447 1.32519 1.22519 0.87089 0.93637 0.93566 0.94041 1.22450 0.99587 0.99225 1.01793 1.19222 0.97290 0.87961 0.96692 1.21128 0.95979 0.97930 1.37892 0.92099 1.24955 0.95626 0.98100 0.95916 1.69965 1.25732 1.17275 1.41377 0.86637 0.83895 0.79271 0.78367 1.20759 1.21907 1.20095 0.93191 0.92845 0.92718 0.90698 0.92034 0.96338 0.91494 0.83027 0.91904 0.88718 0.94248 0.89067 0.88520 0.93545 0.92154 0.94353 0.92379 0.95708 0.95581 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.13 -1.82 6.19 -26.73 -0.17 -1.98 16 3 C 0.06 0.87 5.49 -3.82 -0.02 0.85 16 4 N -0.67 -11.10 6.13 -106.53 -0.65 -11.75 16 5 C 0.09 1.42 2.36 -67.53 -0.16 1.26 16 6 H 0.04 0.53 7.80 -51.93 -0.41 0.13 16 7 C -0.14 -2.06 5.48 -26.59 -0.15 -2.20 16 8 C 0.06 0.83 6.84 37.20 0.25 1.08 16 9 O -0.37 -5.85 10.69 -42.72 -0.46 -6.31 16 10 C 0.04 0.62 6.42 37.21 0.24 0.86 16 11 C 0.05 0.84 2.31 -26.59 -0.06 0.78 16 12 H 0.06 0.90 7.28 -51.93 -0.38 0.52 16 13 O -0.33 -6.68 8.61 -42.72 -0.37 -7.05 16 14 C 0.09 1.85 2.65 -26.74 -0.07 1.78 16 15 H 0.04 0.83 7.34 -51.93 -0.38 0.45 16 16 C -0.17 -3.06 9.24 37.15 0.34 -2.71 16 17 C 0.03 0.65 4.68 -27.89 -0.13 0.52 16 18 C -0.49 -13.66 8.88 -34.44 -0.31 -13.96 16 19 H 0.06 1.62 6.81 -52.49 -0.36 1.27 16 20 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 22 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.02 0.23 8.06 -51.93 -0.42 -0.19 16 32 H 0.07 0.89 7.54 -51.93 -0.39 0.50 16 33 H 0.35 6.23 7.43 -39.29 -0.29 5.94 16 34 H 0.06 0.83 7.58 -51.93 -0.39 0.43 16 35 H 0.09 1.75 7.83 -51.93 -0.41 1.34 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.10 1.34 6.03 -51.93 -0.31 1.02 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 41 H 0.04 0.57 6.26 -51.93 -0.33 0.25 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -31.03 351.46 -8.69 -39.71 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.27 Total: 3.36 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 0.05 Total: -13.59 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.08 Total: -38.59 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.82 Total: -13.36 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.03 -8.69 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686577656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.494 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds