Wall clock time and date at job start Mon Mar 30 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46889 * 2 1 4 4 N 1.46907 * 109.47111 * 179.97438 * 3 2 1 5 5 C 1.46897 * 111.00032 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.54368 * 34.82809 * 5 4 3 7 7 C 1.53181 * 109.61904 * 274.59993 * 5 4 3 8 8 C 1.53085 * 109.16284 * 183.11201 * 7 5 4 9 9 O 1.42899 * 109.41977 * 57.60527 * 8 7 5 10 10 C 1.42899 * 114.10223 * 298.84691 * 9 8 7 11 11 C 1.53097 * 109.41483 * 61.15124 * 10 9 8 12 12 H 1.09003 * 109.52052 * 182.42992 * 11 10 9 13 13 O 1.42901 * 109.52233 * 62.30109 * 11 10 9 14 14 C 1.42902 * 113.99910 * 97.08757 * 13 11 10 15 15 H 1.08997 * 109.47167 * 30.71797 * 14 13 11 16 16 C 1.52994 * 109.47264 * 270.71958 * 14 13 11 17 17 C 1.52997 * 109.46972 * 150.71577 * 14 13 11 18 18 C 1.50699 * 109.47238 * 295.00473 * 17 14 13 19 19 H 1.07997 * 119.99995 * 359.97438 * 18 17 14 20 20 C 1.37875 * 120.00080 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99883 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00301 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46827 * 89.99606 * 22 20 18 24 24 H 1.48499 * 109.47313 * 209.99712 * 22 20 18 25 25 H 1.48504 * 109.47114 * 330.00171 * 22 20 18 26 26 H 1.09004 * 109.47574 * 300.00181 * 1 2 3 27 27 H 1.09006 * 109.47138 * 60.00507 * 1 2 3 28 28 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47288 * 239.99175 * 2 1 3 30 30 H 1.09006 * 109.47138 * 119.99493 * 2 1 3 31 31 H 1.08994 * 109.47387 * 60.00116 * 3 2 1 32 32 H 1.08998 * 109.47016 * 299.99409 * 3 2 1 33 33 H 1.00902 * 110.99541 * 303.95598 * 4 3 2 34 34 H 1.09000 * 109.51768 * 63.20134 * 7 5 4 35 35 H 1.09000 * 109.52278 * 303.01606 * 7 5 4 36 36 H 1.09004 * 109.47756 * 297.62265 * 8 7 5 37 37 H 1.08995 * 109.48014 * 177.59797 * 8 7 5 38 38 H 1.09000 * 109.48428 * 181.13554 * 10 9 8 39 39 H 1.09006 * 109.47893 * 301.15892 * 10 9 8 40 40 H 1.09008 * 109.47268 * 305.75695 * 16 14 13 41 41 H 1.09000 * 109.47559 * 65.75504 * 16 14 13 42 42 H 1.09004 * 109.47243 * 185.76018 * 16 14 13 43 43 H 1.09005 * 109.47112 * 55.00303 * 17 14 13 44 44 H 1.08996 * 109.47310 * 174.99765 * 17 14 13 45 45 H 0.97007 * 120.00516 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.8140 0.0000 6 1 3.3786 3.4569 0.5860 7 6 4.1122 3.3347 -1.4385 8 6 4.7340 4.7336 -1.4339 9 8 6.0255 4.6776 -0.8250 10 6 6.0106 4.2426 0.5361 11 6 5.4402 2.8238 0.6107 12 1 5.3878 2.5066 1.6522 13 8 6.2842 1.9307 -0.1188 14 6 7.2222 1.2230 0.6945 15 1 6.7980 1.0669 1.6863 16 6 8.5112 2.0384 0.8138 17 6 7.5328 -0.1312 0.0538 18 6 6.2885 -0.9815 0.0481 19 1 5.3684 -0.5948 0.4606 20 6 6.3251 -2.2534 -0.4827 21 7 7.4458 -2.7244 -0.9846 22 14 4.7831 -3.3076 -0.4892 23 1 4.0283 -3.0728 -1.7463 24 1 5.1626 -4.7405 -0.3999 25 1 3.9323 -2.9474 0.6735 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.8702 0.9165 0.7822 34 1 3.1092 3.3832 -1.8623 35 1 4.7293 2.6639 -2.0363 36 1 4.0953 5.4134 -0.8698 37 1 4.8304 5.0919 -2.4588 38 1 7.0268 4.2469 0.9303 39 1 5.3889 4.9160 1.1261 40 1 8.8806 2.2819 -0.1825 41 1 8.3094 2.9590 1.3614 42 1 9.2620 1.4554 1.3472 43 1 7.8735 0.0210 -0.9704 44 1 8.3133 -0.6332 0.6255 45 1 7.4715 -3.6192 -1.3585 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686577656.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:46 Heat of formation + Delta-G solvation = -129.055312 kcal Electronic energy + Delta-G solvation = -22874.512825 eV Core-core repulsion = 19697.589930 eV Total energy + Delta-G solvation = -3176.922895 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86368 -38.32653 -37.55716 -35.22607 -34.43607 -32.83623 -31.64077 -30.62838 -29.20643 -26.58475 -25.11560 -24.43023 -23.94418 -22.17133 -21.89227 -20.82192 -18.38547 -17.57804 -17.51493 -17.00599 -16.59234 -16.34476 -16.14404 -15.87181 -15.24193 -14.97872 -14.89989 -14.42026 -14.07288 -13.97731 -13.78535 -13.39660 -13.22973 -13.17907 -12.95666 -12.72918 -12.62929 -12.59804 -12.45861 -12.27814 -12.07402 -11.89401 -11.63744 -11.49942 -11.33401 -11.15435 -10.92135 -10.74852 -10.47695 -9.82996 -9.17304 -8.08357 -6.12454 1.39377 1.43533 1.51216 2.47831 2.82165 3.04690 3.27084 3.33876 3.73278 3.97044 3.98382 4.07380 4.16019 4.23936 4.26196 4.38021 4.41112 4.46780 4.51654 4.55408 4.61267 4.65444 4.67357 4.74574 4.84040 4.86244 4.92321 4.97718 5.11768 5.18049 5.26473 5.28213 5.32372 5.38370 5.45727 5.56822 5.64463 5.91607 6.25725 6.34287 6.35920 6.50616 6.79849 7.01510 7.53054 9.04636 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.008710 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.513794 B = 3213.845832 C = 5133.249575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.067 3.933 4 N -0.693 5.693 5 C 0.095 3.905 6 H 0.071 0.929 7 C -0.134 4.134 8 C 0.063 3.937 9 O -0.396 6.396 10 C 0.046 3.954 11 C 0.044 3.956 12 H 0.070 0.930 13 O -0.356 6.356 14 C 0.100 3.900 15 H 0.051 0.949 16 C -0.164 4.164 17 C 0.028 3.972 18 C -0.494 4.494 19 H 0.071 0.929 20 C -0.005 4.005 21 N -0.943 5.943 22 Si 0.954 3.046 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.257 1.257 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.338 0.662 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.062 0.938 43 H -0.017 1.017 44 H 0.006 0.994 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 15.049 5.526 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C -0.062 4.062 4 N -0.326 5.326 5 C -0.015 4.015 6 H 0.089 0.911 7 C -0.173 4.173 8 C -0.014 4.014 9 O -0.314 6.314 10 C -0.031 4.031 11 C -0.015 4.015 12 H 0.088 0.912 13 O -0.274 6.274 14 C 0.042 3.958 15 H 0.069 0.931 16 C -0.221 4.221 17 C -0.009 4.009 18 C -0.533 4.533 19 H 0.089 0.911 20 C -0.201 4.201 21 N -0.586 5.586 22 Si 0.780 3.220 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.181 1.181 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.158 0.842 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.002 0.998 44 H 0.024 0.976 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.259 14.853 4.485 19.170 hybrid contribution -0.545 -1.065 0.817 1.449 sum -11.804 13.789 5.302 18.910 Atomic orbital electron populations 1.21670 0.93541 1.02123 1.02551 1.21531 0.97140 0.96735 1.01268 1.22022 0.86942 0.96528 1.00665 1.60271 1.07546 1.13513 1.51240 1.21670 0.93162 0.89824 0.96837 0.91095 1.22059 1.01312 0.97121 0.96786 1.22703 0.84192 0.95199 0.99280 1.87923 1.30017 1.86983 1.26509 1.23245 1.02942 0.93217 0.83739 1.23161 0.91111 0.91666 0.95583 0.91207 1.88144 1.49036 1.56521 1.33726 1.22185 0.88961 0.91653 0.93005 0.93062 1.22332 0.97950 1.00254 1.01560 1.19101 0.96119 0.91268 0.94430 1.21536 0.96847 0.98059 1.36811 0.91106 1.25822 0.98609 0.99764 0.95861 1.70109 1.28005 1.17688 1.42774 0.85607 0.80254 0.77388 0.78723 1.21027 1.21662 1.18128 0.91555 0.91907 0.92547 0.93667 0.93232 0.94187 0.90840 0.84246 0.90344 0.93476 0.91078 0.88156 0.88440 0.90049 0.93610 0.90985 0.91907 0.99846 0.97557 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.91 71.98 0.71 -2.14 16 2 C -0.13 -3.52 6.19 30.59 0.19 -3.33 16 3 C 0.07 1.71 5.49 86.30 0.47 2.19 16 4 N -0.69 -22.31 6.13 -490.95 -3.01 -25.32 16 5 C 0.09 2.62 2.36 45.04 0.11 2.73 16 6 H 0.07 1.56 7.80 -2.39 -0.02 1.54 16 7 C -0.13 -3.78 5.48 30.68 0.17 -3.61 16 8 C 0.06 1.49 6.84 72.01 0.49 1.98 16 9 O -0.40 -11.66 10.69 -141.82 -1.52 -13.18 16 10 C 0.05 1.16 6.42 72.01 0.46 1.62 16 11 C 0.04 1.32 2.31 30.69 0.07 1.39 16 12 H 0.07 1.93 7.28 -2.39 -0.02 1.92 16 13 O -0.36 -14.52 8.61 -141.82 -1.22 -15.74 16 14 C 0.10 4.14 2.65 30.59 0.08 4.22 16 15 H 0.05 2.01 7.34 -2.39 -0.02 1.99 16 16 C -0.16 -5.68 9.24 71.98 0.66 -5.01 16 17 C 0.03 1.51 4.68 29.85 0.14 1.65 16 18 C -0.49 -28.18 8.88 25.60 0.23 -27.96 16 19 H 0.07 3.82 6.81 -2.91 -0.02 3.80 16 20 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 21 N -0.94 -59.63 13.29 21.45 0.28 -59.34 16 22 Si 0.95 46.47 29.54 68.60 2.03 48.50 16 23 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 25 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.04 0.86 8.06 -2.39 -0.02 0.84 16 32 H 0.07 1.77 7.54 -2.39 -0.02 1.75 16 33 H 0.34 11.82 7.43 -89.69 -0.67 11.15 16 34 H 0.08 1.90 7.58 -2.39 -0.02 1.89 16 35 H 0.05 1.77 7.83 -2.39 -0.02 1.75 16 36 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.10 2.40 6.03 -2.39 -0.01 2.39 16 39 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.07 2.00 6.26 -2.39 -0.01 1.99 16 42 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 43 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -69.88 351.46 1.09 -68.79 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.27 Total: 22.41 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 4.25 Total: -26.11 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.72 Total: -84.66 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -2.74 Total: -28.92 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -69.88 1.09 -68.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686577656.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.269 kcal (2) G-P(sol) polarization free energy of solvation -69.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds