Wall clock time and date at job start Mon Mar 30 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46759 * 2 1 4 4 N 1.46900 * 109.46949 * 180.02562 * 3 2 1 5 5 C 1.46899 * 110.99997 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.61575 * 34.77844 * 5 4 3 7 7 C 1.53207 * 109.53909 * 274.55770 * 5 4 3 8 8 C 1.53092 * 109.14859 * 183.15688 * 7 5 4 9 9 O 1.42905 * 109.42428 * 57.60656 * 8 7 5 10 10 C 1.42898 * 114.09851 * 298.83405 * 9 8 7 11 11 C 1.53097 * 109.41490 * 61.15689 * 10 9 8 12 12 H 1.08996 * 109.52104 * 62.36474 * 11 10 9 13 13 O 1.42903 * 109.52052 * 182.48499 * 11 10 9 14 14 C 1.42892 * 114.00128 * 269.99790 * 13 11 10 15 15 H 1.09003 * 109.47532 * 330.00530 * 14 13 11 16 16 C 1.53004 * 109.46955 * 90.00373 * 14 13 11 17 17 C 1.52999 * 109.47515 * 210.00291 * 14 13 11 18 18 C 1.50696 * 109.47095 * 65.00003 * 17 14 13 19 19 H 1.08000 * 120.00269 * 0.02562 * 18 17 14 20 20 C 1.37882 * 120.00176 * 180.02562 * 18 17 14 21 21 N 1.31515 * 119.99676 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00095 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46789 * 60.00352 * 22 20 18 24 24 H 1.48502 * 109.47030 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47327 * 300.00229 * 22 20 18 26 26 H 1.08996 * 109.47595 * 299.99762 * 1 2 3 27 27 H 1.08993 * 109.47381 * 60.00429 * 1 2 3 28 28 H 1.09001 * 109.47024 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47112 * 240.00047 * 2 1 3 30 30 H 1.09001 * 109.46867 * 119.99956 * 2 1 3 31 31 H 1.08998 * 109.47271 * 60.00144 * 3 2 1 32 32 H 1.09001 * 109.47395 * 299.99633 * 3 2 1 33 33 H 1.00898 * 111.00156 * 56.04594 * 4 3 2 34 34 H 1.08999 * 109.53319 * 63.25207 * 7 5 4 35 35 H 1.08992 * 109.51748 * 303.05423 * 7 5 4 36 36 H 1.09002 * 109.48343 * 297.61643 * 8 7 5 37 37 H 1.08999 * 109.47546 * 177.59237 * 8 7 5 38 38 H 1.08995 * 109.48500 * 181.13987 * 10 9 8 39 39 H 1.09000 * 109.47974 * 301.16817 * 10 9 8 40 40 H 1.08995 * 109.47435 * 59.99958 * 16 14 13 41 41 H 1.09005 * 109.47086 * 180.02562 * 16 14 13 42 42 H 1.09000 * 109.46884 * 300.00140 * 16 14 13 43 43 H 1.08998 * 109.47234 * 185.00564 * 17 14 13 44 44 H 1.09004 * 109.47194 * 305.00317 * 17 14 13 45 45 H 0.96998 * 119.99662 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0353 2.8140 0.0000 6 1 3.3794 3.4574 0.5863 7 6 4.1112 3.3343 -1.4390 8 6 4.7339 4.7329 -1.4351 9 8 6.0260 4.6762 -0.8273 10 6 6.0118 4.2416 0.5339 11 6 5.4406 2.8232 0.6094 12 1 6.0842 2.1413 0.0538 13 8 5.3716 2.4083 1.9752 14 6 6.5499 1.7489 2.4426 15 1 7.0289 1.2291 1.6128 16 6 7.5169 2.7831 3.0228 17 6 6.1727 0.7384 3.5277 18 6 5.3193 -0.3486 2.9269 19 1 5.0712 -0.3218 1.8761 20 6 4.8552 -1.3776 3.7187 21 7 5.1569 -1.4101 4.9984 22 14 3.7968 -2.7248 2.9741 23 1 4.5558 -3.4134 1.8994 24 1 3.4307 -3.7056 4.0273 25 1 2.5631 -2.1266 2.4036 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.8702 0.9166 -0.7822 34 1 3.1079 3.3835 -1.8622 35 1 4.7273 2.6630 -2.0370 36 1 4.0962 5.4132 -0.8706 37 1 4.8298 5.0909 -2.4602 38 1 7.0283 4.2455 0.9274 39 1 5.3910 4.9155 1.1242 40 1 7.0381 3.3029 3.8525 41 1 8.4160 2.2801 3.3789 42 1 7.7857 3.5029 2.2497 43 1 7.0784 0.2998 3.9464 44 1 5.6153 1.2436 4.3166 45 1 4.8307 -2.1342 5.5553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686577658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:54 Heat of formation + Delta-G solvation = -109.686688 kcal Electronic energy + Delta-G solvation = -22678.657858 eV Core-core repulsion = 19502.574850 eV Total energy + Delta-G solvation = -3176.083008 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71493 -37.10749 -36.49783 -33.65476 -32.91098 -31.20736 -30.49649 -29.29628 -27.25312 -25.50441 -23.35077 -22.99056 -22.78834 -21.28299 -20.30709 -19.77734 -16.74095 -16.16817 -16.03510 -15.79947 -15.58827 -15.05684 -14.60246 -14.28604 -14.14785 -13.69962 -13.60464 -13.10543 -12.72347 -12.58926 -12.34658 -12.14936 -11.79058 -11.67709 -11.53016 -11.48530 -11.19434 -11.11561 -10.98127 -10.86241 -10.64171 -10.52740 -10.39596 -10.18952 -9.91937 -9.69504 -9.22431 -8.95148 -8.45969 -8.18306 -7.95327 -5.81156 -3.78063 3.44580 3.47937 3.51486 3.78782 4.25414 4.38963 4.62665 4.82744 4.91034 5.07161 5.16423 5.20915 5.28008 5.33917 5.44892 5.48741 5.56702 5.58414 5.61037 5.69814 5.74697 5.83502 5.87634 5.92181 5.94230 6.05188 6.13434 6.17731 6.17967 6.24750 6.40910 6.44672 6.60514 6.81474 7.04302 7.13345 7.34509 7.64354 7.71792 7.82495 8.19195 8.31548 8.64081 9.28056 9.82883 11.31350 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.007891 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.966667 B = 3547.515247 C = 5454.574641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.068 3.932 4 N -0.661 5.661 5 C 0.094 3.906 6 H 0.082 0.918 7 C -0.185 4.185 8 C 0.064 3.936 9 O -0.382 6.382 10 C 0.034 3.966 11 C 0.072 3.928 12 H 0.062 0.938 13 O -0.339 6.339 14 C 0.092 3.908 15 H 0.046 0.954 16 C -0.177 4.177 17 C 0.025 3.975 18 C -0.490 4.490 19 H 0.066 0.934 20 C 0.051 3.949 21 N -0.906 5.906 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.293 1.293 25 H -0.274 1.274 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.018 0.982 33 H 0.336 0.664 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.042 0.958 43 H 0.026 0.974 44 H 0.022 0.978 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 9.991 -12.876 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.061 4.061 4 N -0.290 5.290 5 C -0.017 4.017 6 H 0.100 0.900 7 C -0.224 4.224 8 C -0.014 4.014 9 O -0.301 6.301 10 C -0.043 4.043 11 C 0.012 3.988 12 H 0.080 0.920 13 O -0.257 6.257 14 C 0.035 3.965 15 H 0.064 0.936 16 C -0.235 4.235 17 C -0.012 4.012 18 C -0.528 4.528 19 H 0.084 0.916 20 C -0.148 4.148 21 N -0.547 5.547 22 Si 0.718 3.282 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.200 1.200 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.154 0.846 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.041 0.959 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.596 9.869 -11.991 15.941 hybrid contribution -0.838 -0.663 -1.225 1.625 sum -4.433 9.206 -13.216 16.705 Atomic orbital electron populations 1.21701 0.96021 1.01483 1.01319 1.21568 0.95141 0.96748 1.03248 1.21937 0.87711 0.96842 0.99599 1.60294 1.06892 1.12185 1.49593 1.21652 0.96299 0.90495 0.93215 0.89992 1.23020 1.01690 0.98677 0.99030 1.22496 0.85054 0.95468 0.98349 1.87919 1.28333 1.87442 1.26405 1.23490 1.02733 0.95700 0.82415 1.22566 0.95513 0.94203 0.86506 0.91982 1.88072 1.38786 1.76116 1.22720 1.22469 0.84379 0.91850 0.97833 0.93612 1.22543 1.00110 0.99843 1.00988 1.19221 0.97030 0.92204 0.92697 1.21203 1.29663 1.05951 0.95994 0.91626 1.24969 0.96748 0.98254 0.94795 1.69962 1.46837 1.32916 1.05035 0.86715 0.81333 0.81698 0.78430 1.20717 1.21961 1.19956 0.92621 0.93356 0.92810 0.92605 0.89998 0.91027 0.96432 0.84611 0.90879 0.90799 0.93183 0.89108 0.88255 0.92642 0.92397 0.92252 0.93948 0.95600 0.95921 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.45 16 2 C -0.13 -1.90 6.19 -26.73 -0.17 -2.07 16 3 C 0.07 0.98 5.49 -3.82 -0.02 0.96 16 4 N -0.66 -10.60 6.18 -106.52 -0.66 -11.26 16 5 C 0.09 1.38 2.23 -67.51 -0.15 1.23 16 6 H 0.08 1.25 7.80 -51.93 -0.41 0.85 16 7 C -0.18 -2.10 5.40 -26.58 -0.14 -2.24 16 8 C 0.06 0.70 6.84 37.20 0.25 0.96 16 9 O -0.38 -5.29 10.77 -35.23 -0.38 -5.67 16 10 C 0.03 0.49 6.21 37.21 0.23 0.72 16 11 C 0.07 1.20 2.45 -26.59 -0.07 1.13 16 12 H 0.06 1.08 7.37 -51.93 -0.38 0.69 16 13 O -0.34 -7.01 9.34 -35.23 -0.33 -7.34 16 14 C 0.09 1.95 2.66 -26.73 -0.07 1.88 16 15 H 0.05 0.97 7.37 -51.93 -0.38 0.59 16 16 C -0.18 -3.11 9.32 37.16 0.35 -2.77 16 17 C 0.03 0.67 4.68 -27.89 -0.13 0.54 16 18 C -0.49 -13.98 8.88 -34.44 -0.31 -14.29 16 19 H 0.07 1.85 7.74 -52.49 -0.41 1.45 16 20 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 21 N -0.91 -27.89 13.29 55.43 0.74 -27.16 16 22 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 25 H -0.27 -6.67 6.77 56.52 0.38 -6.29 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.52 7.81 -51.93 -0.41 1.11 16 31 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 32 H 0.02 0.22 7.54 -51.93 -0.39 -0.18 16 33 H 0.34 4.97 8.44 -39.29 -0.33 4.64 16 34 H 0.07 0.73 7.58 -51.93 -0.39 0.34 16 35 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.41 5.59 -51.93 -0.29 1.12 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.04 0.64 5.53 -51.93 -0.29 0.35 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -31.30 352.61 -8.61 -39.91 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.32 Total: 2.89 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 0.05 Total: -13.99 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.08 Total: -38.41 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.71 Total: -13.01 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.30 -8.61 -39.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686577658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.782 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds