Wall clock time and date at job start Mon Mar 30 2020 06:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46759 * 2 1 4 4 N 1.46900 * 109.46949 * 180.02562 * 3 2 1 5 5 C 1.46899 * 110.99997 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.61575 * 34.77844 * 5 4 3 7 7 C 1.53207 * 109.53909 * 274.55770 * 5 4 3 8 8 C 1.53092 * 109.14859 * 183.15688 * 7 5 4 9 9 O 1.42905 * 109.42428 * 57.60656 * 8 7 5 10 10 C 1.42898 * 114.09851 * 298.83405 * 9 8 7 11 11 C 1.53097 * 109.41490 * 61.15689 * 10 9 8 12 12 H 1.08996 * 109.52104 * 62.36474 * 11 10 9 13 13 O 1.42903 * 109.52052 * 182.48499 * 11 10 9 14 14 C 1.42892 * 114.00128 * 269.99790 * 13 11 10 15 15 H 1.09003 * 109.47532 * 330.00530 * 14 13 11 16 16 C 1.53004 * 109.46955 * 90.00373 * 14 13 11 17 17 C 1.52999 * 109.47515 * 210.00291 * 14 13 11 18 18 C 1.50696 * 109.47095 * 65.00003 * 17 14 13 19 19 H 1.08000 * 120.00269 * 0.02562 * 18 17 14 20 20 C 1.37882 * 120.00176 * 180.02562 * 18 17 14 21 21 N 1.31515 * 119.99676 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00095 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46789 * 60.00352 * 22 20 18 24 24 H 1.48502 * 109.47030 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47327 * 300.00229 * 22 20 18 26 26 H 1.08996 * 109.47595 * 299.99762 * 1 2 3 27 27 H 1.08993 * 109.47381 * 60.00429 * 1 2 3 28 28 H 1.09001 * 109.47024 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47112 * 240.00047 * 2 1 3 30 30 H 1.09001 * 109.46867 * 119.99956 * 2 1 3 31 31 H 1.08998 * 109.47271 * 60.00144 * 3 2 1 32 32 H 1.09001 * 109.47395 * 299.99633 * 3 2 1 33 33 H 1.00898 * 111.00156 * 56.04594 * 4 3 2 34 34 H 1.08999 * 109.53319 * 63.25207 * 7 5 4 35 35 H 1.08992 * 109.51748 * 303.05423 * 7 5 4 36 36 H 1.09002 * 109.48343 * 297.61643 * 8 7 5 37 37 H 1.08999 * 109.47546 * 177.59237 * 8 7 5 38 38 H 1.08995 * 109.48500 * 181.13987 * 10 9 8 39 39 H 1.09000 * 109.47974 * 301.16817 * 10 9 8 40 40 H 1.08995 * 109.47435 * 59.99958 * 16 14 13 41 41 H 1.09005 * 109.47086 * 180.02562 * 16 14 13 42 42 H 1.09000 * 109.46884 * 300.00140 * 16 14 13 43 43 H 1.08998 * 109.47234 * 185.00564 * 17 14 13 44 44 H 1.09004 * 109.47194 * 305.00317 * 17 14 13 45 45 H 0.96998 * 119.99662 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0353 2.8140 0.0000 6 1 3.3794 3.4574 0.5863 7 6 4.1112 3.3343 -1.4390 8 6 4.7339 4.7329 -1.4351 9 8 6.0260 4.6762 -0.8273 10 6 6.0118 4.2416 0.5339 11 6 5.4406 2.8232 0.6094 12 1 6.0842 2.1413 0.0538 13 8 5.3716 2.4083 1.9752 14 6 6.5499 1.7489 2.4426 15 1 7.0289 1.2291 1.6128 16 6 7.5169 2.7831 3.0228 17 6 6.1727 0.7384 3.5277 18 6 5.3193 -0.3486 2.9269 19 1 5.0712 -0.3218 1.8761 20 6 4.8552 -1.3776 3.7187 21 7 5.1569 -1.4101 4.9984 22 14 3.7968 -2.7248 2.9741 23 1 4.5558 -3.4134 1.8994 24 1 3.4307 -3.7056 4.0273 25 1 2.5631 -2.1266 2.4036 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.8702 0.9166 -0.7822 34 1 3.1079 3.3835 -1.8622 35 1 4.7273 2.6630 -2.0370 36 1 4.0962 5.4132 -0.8706 37 1 4.8298 5.0909 -2.4602 38 1 7.0283 4.2455 0.9274 39 1 5.3910 4.9155 1.1242 40 1 7.0381 3.3029 3.8525 41 1 8.4160 2.2801 3.3789 42 1 7.7857 3.5029 2.2497 43 1 7.0784 0.2998 3.9464 44 1 5.6153 1.2436 4.3166 45 1 4.8307 -2.1342 5.5553 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686577658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:53 Heat of formation + Delta-G solvation = -131.148454 kcal Electronic energy + Delta-G solvation = -22679.588510 eV Core-core repulsion = 19502.574850 eV Total energy + Delta-G solvation = -3177.013660 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87978 -38.57796 -37.65106 -35.26350 -34.51660 -32.95462 -31.52046 -30.56684 -29.22073 -26.59345 -25.11052 -24.23450 -24.01516 -22.45645 -21.84476 -21.14431 -18.39865 -17.95541 -17.19896 -17.10460 -16.76192 -16.52169 -16.11612 -15.66928 -15.30261 -15.06393 -14.92813 -14.35064 -14.12636 -14.05085 -13.73097 -13.32327 -13.27695 -13.22658 -13.12660 -12.84433 -12.66962 -12.50136 -12.44634 -12.26747 -12.10218 -11.97800 -11.89805 -11.59856 -11.28493 -11.14747 -11.04688 -10.83729 -10.46340 -9.96150 -9.10815 -8.08335 -6.12402 1.39838 1.44149 1.51445 2.48833 2.67525 3.07027 3.18913 3.28446 3.80325 3.87047 3.99137 4.07658 4.12672 4.16801 4.21037 4.24687 4.35763 4.45662 4.49416 4.55057 4.58850 4.64291 4.70063 4.79876 4.82583 4.85538 4.89587 4.91428 5.05778 5.11879 5.17026 5.26122 5.30663 5.31917 5.39816 5.52653 5.63307 5.91867 6.12862 6.20866 6.38395 6.55242 6.76701 7.01236 7.53059 9.04276 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012954 B = 0.007891 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.966667 B = 3547.515247 C = 5454.574641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.074 3.926 4 N -0.691 5.691 5 C 0.095 3.905 6 H 0.073 0.927 7 C -0.171 4.171 8 C 0.058 3.942 9 O -0.391 6.391 10 C 0.044 3.956 11 C 0.067 3.933 12 H 0.052 0.948 13 O -0.364 6.364 14 C 0.102 3.898 15 H 0.044 0.956 16 C -0.168 4.168 17 C 0.028 3.972 18 C -0.498 4.498 19 H 0.065 0.935 20 C -0.004 4.004 21 N -0.943 5.943 22 Si 0.954 3.046 23 H -0.270 1.270 24 H -0.291 1.291 25 H -0.265 1.265 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.340 0.660 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.007 0.993 44 H -0.012 1.012 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.416 10.927 -15.515 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.055 4.055 4 N -0.321 5.321 5 C -0.015 4.015 6 H 0.092 0.908 7 C -0.210 4.210 8 C -0.019 4.019 9 O -0.310 6.310 10 C -0.033 4.033 11 C 0.008 3.992 12 H 0.070 0.930 13 O -0.282 6.282 14 C 0.044 3.956 15 H 0.062 0.938 16 C -0.225 4.225 17 C -0.009 4.009 18 C -0.537 4.537 19 H 0.083 0.917 20 C -0.200 4.200 21 N -0.586 5.586 22 Si 0.780 3.220 23 H -0.195 1.195 24 H -0.217 1.217 25 H -0.190 1.190 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.159 0.841 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.025 0.975 44 H 0.007 0.993 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.404 10.821 -14.655 18.742 hybrid contribution -0.599 -0.930 -0.428 1.186 sum -5.003 9.891 -15.083 18.718 Atomic orbital electron populations 1.21675 0.94041 1.02086 1.02298 1.21540 0.96914 0.96643 1.01487 1.21873 0.86882 0.96646 1.00088 1.60239 1.08054 1.13323 1.50448 1.21641 0.94710 0.89951 0.95204 0.90846 1.22905 1.03070 0.98729 0.96342 1.22761 0.84021 0.95362 0.99769 1.87915 1.30144 1.87204 1.25766 1.23282 1.02674 0.94128 0.83249 1.22809 0.96989 0.95230 0.84187 0.93008 1.88009 1.38720 1.76205 1.25310 1.22138 0.85212 0.92041 0.96184 0.93765 1.22420 0.99181 0.99370 1.01541 1.19099 0.95351 0.93022 0.93402 1.21511 1.29630 1.06531 0.96002 0.91682 1.25822 0.98127 1.00825 0.95178 1.70100 1.48172 1.33849 1.06438 0.85680 0.79855 0.78683 0.77809 1.19520 1.21715 1.19012 0.93110 0.90889 0.92444 0.91474 0.94528 0.92823 0.93343 0.84073 0.88723 0.90750 0.92177 0.86411 0.88093 0.92288 0.92891 0.91582 0.90921 0.97518 0.99330 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.91 71.98 0.71 -2.54 16 2 C -0.13 -3.64 6.19 30.59 0.19 -3.46 16 3 C 0.07 2.03 5.49 86.30 0.47 2.50 16 4 N -0.69 -21.65 6.18 -490.91 -3.04 -24.69 16 5 C 0.10 2.68 2.23 45.04 0.10 2.78 16 6 H 0.07 2.17 7.80 -2.39 -0.02 2.15 16 7 C -0.17 -3.38 5.40 30.69 0.17 -3.21 16 8 C 0.06 1.07 6.84 72.01 0.49 1.56 16 9 O -0.39 -9.79 10.77 -148.98 -1.60 -11.39 16 10 C 0.04 1.20 6.21 72.01 0.45 1.64 16 11 C 0.07 2.18 2.45 30.69 0.08 2.25 16 12 H 0.05 1.77 7.37 -2.39 -0.02 1.75 16 13 O -0.36 -15.21 9.34 -148.98 -1.39 -16.60 16 14 C 0.10 4.38 2.66 30.60 0.08 4.46 16 15 H 0.04 1.89 7.37 -2.39 -0.02 1.87 16 16 C -0.17 -5.80 9.32 71.98 0.67 -5.13 16 17 C 0.03 1.55 4.68 29.85 0.14 1.69 16 18 C -0.50 -29.28 8.88 25.60 0.23 -29.05 16 19 H 0.06 3.75 7.74 -2.91 -0.02 3.73 16 20 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 21 N -0.94 -59.73 13.29 21.45 0.28 -59.44 16 22 Si 0.95 46.71 29.54 68.60 2.03 48.74 16 23 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -12.53 6.77 99.48 0.67 -11.85 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.04 1.36 7.81 -2.39 -0.02 1.34 16 31 H 0.05 1.65 8.06 -2.39 -0.02 1.63 16 32 H 0.05 1.04 7.54 -2.39 -0.02 1.02 16 33 H 0.34 9.75 8.44 -89.70 -0.76 8.99 16 34 H 0.09 1.50 7.58 -2.39 -0.02 1.48 16 35 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 2.66 5.59 -2.39 -0.01 2.65 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.07 2.06 5.53 -2.39 -0.01 2.05 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 45 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -69.51 352.61 0.67 -68.84 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.15 Total: 20.83 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 4.24 Total: -26.28 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.75 Total: -84.13 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -3.00 Total: -28.00 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -69.51 0.67 -68.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686577658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.312 kcal (2) G-P(sol) polarization free energy of solvation -69.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds