Wall clock time and date at job start Mon Mar 30 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47124 * 2 1 4 4 N 1.46902 * 109.47145 * 180.02562 * 3 2 1 5 5 C 1.46901 * 110.99831 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.54406 * 34.82114 * 5 4 3 7 7 C 1.53207 * 109.61211 * 274.59957 * 5 4 3 8 8 C 1.53092 * 109.14859 * 183.11398 * 7 5 4 9 9 O 1.42905 * 109.42428 * 57.60656 * 8 7 5 10 10 C 1.42898 * 114.09851 * 298.83405 * 9 8 7 11 11 C 1.53097 * 109.41490 * 61.15689 * 10 9 8 12 12 H 1.08997 * 109.52106 * 182.48365 * 11 10 9 13 13 O 1.42901 * 109.52174 * 62.30119 * 11 10 9 14 14 C 1.42899 * 114.00319 * 89.99820 * 13 11 10 15 15 C 1.52994 * 109.47006 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.46949 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46808 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00676 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99946 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99687 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00373 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46788 * 59.99878 * 21 19 17 23 23 H 1.48501 * 109.47260 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47082 * 300.00154 * 21 19 17 25 25 H 1.09002 * 109.47562 * 300.00231 * 1 2 3 26 26 H 1.08998 * 109.47267 * 60.00651 * 1 2 3 27 27 H 1.09002 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47698 * 239.99266 * 2 1 3 29 29 H 1.09007 * 109.47158 * 119.99400 * 2 1 3 30 30 H 1.08991 * 109.47787 * 59.99670 * 3 2 1 31 31 H 1.09005 * 109.47089 * 299.99529 * 3 2 1 32 32 H 1.00893 * 111.00341 * 56.03851 * 4 3 2 33 33 H 1.08999 * 109.53319 * 63.20916 * 7 5 4 34 34 H 1.08992 * 109.51748 * 303.01133 * 7 5 4 35 35 H 1.09002 * 109.48343 * 297.61643 * 8 7 5 36 36 H 1.08999 * 109.47546 * 177.59237 * 8 7 5 37 37 H 1.08995 * 109.48500 * 181.13987 * 10 9 8 38 38 H 1.09000 * 109.47974 * 301.16817 * 10 9 8 39 39 H 1.09000 * 109.47162 * 299.99893 * 14 13 11 40 40 H 1.09000 * 109.47054 * 59.99861 * 14 13 11 41 41 H 1.09003 * 109.47747 * 300.00027 * 15 14 13 42 42 H 1.09000 * 109.47155 * 60.00134 * 15 14 13 43 43 H 1.08991 * 109.47288 * 300.00334 * 16 15 14 44 44 H 1.09001 * 109.46805 * 60.00993 * 16 15 14 45 45 H 0.97003 * 119.99662 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 -0.0006 5 6 4.0353 2.8140 -0.0013 6 1 3.3790 3.4567 0.5854 7 6 4.1109 3.3351 -1.4400 8 6 4.7328 4.7340 -1.4353 9 8 6.0249 4.6778 -0.8275 10 6 6.0110 4.2425 0.5335 11 6 5.4406 2.8237 0.6083 12 1 5.3881 2.5067 1.6498 13 8 6.2841 1.9308 -0.1220 14 6 7.3254 1.3439 0.6611 15 6 8.1607 0.4111 -0.2182 16 6 9.2760 -0.2168 0.6201 17 6 10.0991 -1.1351 -0.2461 18 1 9.8518 -1.2582 -1.2902 19 6 11.1680 -1.8182 0.2943 20 7 11.4688 -1.6687 1.5658 21 14 12.1887 -2.9559 -0.7796 22 1 12.7863 -2.1792 -1.8953 23 1 13.2712 -3.5654 0.0341 24 1 11.3205 -4.0269 -1.3313 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8898 31 1 1.6766 1.9563 -0.8901 32 1 3.8702 0.9165 -0.7821 33 1 3.1076 3.3839 -1.8631 34 1 4.7275 2.6644 -2.0383 35 1 4.0946 5.4137 -0.8705 36 1 4.8285 5.0926 -2.4602 37 1 7.0274 4.2468 0.9270 38 1 5.3897 4.9157 1.1241 39 1 7.9630 2.1300 1.0656 40 1 6.8868 0.7742 1.4804 41 1 7.5230 -0.3751 -0.6224 42 1 8.5993 0.9804 -1.0377 43 1 9.9136 0.5695 1.0239 44 1 8.8377 -0.7862 1.4398 45 1 12.2206 -2.1495 1.9461 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686584997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:30 Heat of formation + Delta-G solvation = -119.506498 kcal Electronic energy + Delta-G solvation = -21483.139128 eV Core-core repulsion = 18306.630300 eV Total energy + Delta-G solvation = -3176.508827 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92916 -36.92679 -36.78661 -34.01669 -33.49804 -31.53594 -30.71099 -29.88419 -26.52237 -25.85602 -23.53731 -23.30247 -22.73560 -21.59304 -20.28477 -19.89405 -16.73934 -16.57671 -16.10299 -16.03365 -15.66138 -15.46546 -15.02180 -14.58771 -14.39271 -14.19334 -14.00073 -13.44736 -13.10474 -12.75703 -12.54108 -12.31698 -12.08842 -11.91106 -11.85592 -11.43105 -11.39902 -11.29332 -11.03085 -10.86798 -10.78576 -10.59577 -10.51503 -10.28996 -10.02243 -9.61152 -9.37123 -9.05690 -8.85639 -8.44419 -8.30304 -5.95971 -3.97834 3.37407 3.40981 3.44119 3.73587 3.93272 4.13652 4.50952 4.62378 4.66289 4.76961 4.82778 4.88671 5.01301 5.11256 5.18207 5.26402 5.33192 5.39448 5.39883 5.44332 5.52276 5.54263 5.57998 5.71260 5.79725 5.80259 5.90221 5.97359 6.01581 6.07731 6.10410 6.32665 6.78225 6.79544 6.92519 7.14229 7.18102 7.31314 7.68955 7.75385 7.86097 8.04228 8.47615 9.08703 9.65781 11.15599 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.003737 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.587552 B = 7491.530901 C = 8641.958281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.058 3.942 4 N -0.679 5.679 5 C 0.094 3.906 6 H 0.082 0.918 7 C -0.182 4.182 8 C 0.066 3.934 9 O -0.369 6.369 10 C 0.039 3.961 11 C 0.067 3.933 12 H 0.072 0.928 13 O -0.367 6.367 14 C 0.065 3.935 15 C -0.105 4.105 16 C 0.024 3.976 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.352 0.648 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.050 11.207 -2.322 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.071 4.071 4 N -0.309 5.309 5 C -0.016 4.016 6 H 0.101 0.899 7 C -0.221 4.221 8 C -0.012 4.012 9 O -0.287 6.287 10 C -0.039 4.039 11 C 0.007 3.993 12 H 0.090 0.910 13 O -0.286 6.286 14 C -0.011 4.011 15 C -0.143 4.143 16 C -0.013 4.013 17 C -0.557 4.557 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.172 0.828 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.731 11.061 -1.788 23.565 hybrid contribution 0.210 -0.395 -0.958 1.057 sum -20.521 10.666 -2.746 23.290 Atomic orbital electron populations 1.21723 0.95711 1.01772 1.01572 1.21509 0.95359 0.96418 1.02972 1.22034 0.87987 0.97048 1.00026 1.60460 1.06589 1.12686 1.51186 1.21651 0.94564 0.90212 0.95219 0.89947 1.22866 1.01304 0.99140 0.98802 1.22468 0.85026 0.95151 0.98536 1.87997 1.27945 1.87033 1.25699 1.23173 1.02721 0.94283 0.83710 1.22667 0.89865 0.90196 0.96565 0.91002 1.87932 1.43532 1.60347 1.36779 1.22783 0.88242 0.95444 0.94647 1.21607 0.97119 0.96798 0.98736 1.19032 0.91878 0.95351 0.95013 1.21199 1.12711 1.25542 0.96220 0.92633 1.25026 0.97469 0.96996 0.95014 1.69962 1.28852 1.42833 1.12004 0.86636 0.79819 0.81033 0.80388 1.20224 1.21319 1.20225 0.92757 0.92994 0.92521 0.91997 0.90927 0.91378 0.95599 0.82828 0.91602 0.89628 0.93713 0.89060 0.88317 0.92838 0.94285 0.93828 0.92733 0.92752 0.96588 0.96539 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.15 0.37 -0.71 16 2 C -0.12 -1.10 6.19 -26.74 -0.17 -1.26 16 3 C 0.06 0.53 5.49 -3.82 -0.02 0.51 16 4 N -0.68 -7.76 6.08 -106.51 -0.65 -8.41 16 5 C 0.09 1.04 2.33 -67.51 -0.16 0.88 16 6 H 0.08 0.80 7.80 -51.93 -0.41 0.39 16 7 C -0.18 -1.91 5.25 -26.58 -0.14 -2.05 16 8 C 0.07 0.69 6.84 37.20 0.25 0.94 16 9 O -0.37 -5.12 10.70 -42.72 -0.46 -5.57 16 10 C 0.04 0.48 6.48 37.21 0.24 0.72 16 11 C 0.07 0.88 2.64 -26.59 -0.07 0.81 16 12 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 13 O -0.37 -6.17 9.19 -42.72 -0.39 -6.57 16 14 C 0.06 1.20 5.75 37.15 0.21 1.42 16 15 C -0.10 -2.31 5.52 -26.73 -0.15 -2.46 16 16 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 17 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 18 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 21 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 31 H 0.03 0.22 7.54 -51.93 -0.39 -0.17 16 32 H 0.35 4.35 8.42 -39.30 -0.33 4.02 16 33 H 0.07 0.58 7.58 -51.93 -0.39 0.19 16 34 H 0.09 1.10 7.77 -51.93 -0.40 0.69 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.25 7.83 -51.93 -0.41 0.85 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.04 0.71 7.83 -51.93 -0.41 0.30 16 40 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 358.53 15.07 5.40 5.40 Total: -1.00 -31.33 358.53 -9.15 -40.48 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -8.60 Total: -1.14 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -0.17 Total: -14.58 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.09 Total: -35.09 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.85 Total: -12.14 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.33 -9.15 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686584997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.026 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds