Wall clock time and date at job start Mon Mar 30 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 109.47124 * 2 1 4 4 N 1.46902 * 109.47145 * 180.02562 * 3 2 1 5 5 C 1.46901 * 110.99831 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.54406 * 34.82114 * 5 4 3 7 7 C 1.53207 * 109.61211 * 274.59957 * 5 4 3 8 8 C 1.53092 * 109.14859 * 183.11398 * 7 5 4 9 9 O 1.42905 * 109.42428 * 57.60656 * 8 7 5 10 10 C 1.42898 * 114.09851 * 298.83405 * 9 8 7 11 11 C 1.53097 * 109.41490 * 61.15689 * 10 9 8 12 12 H 1.08997 * 109.52106 * 182.48365 * 11 10 9 13 13 O 1.42901 * 109.52174 * 62.30119 * 11 10 9 14 14 C 1.42899 * 114.00319 * 89.99820 * 13 11 10 15 15 C 1.52994 * 109.47006 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.46949 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46808 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00676 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99946 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99687 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00373 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46788 * 59.99878 * 21 19 17 23 23 H 1.48501 * 109.47260 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47082 * 300.00154 * 21 19 17 25 25 H 1.09002 * 109.47562 * 300.00231 * 1 2 3 26 26 H 1.08998 * 109.47267 * 60.00651 * 1 2 3 27 27 H 1.09002 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47698 * 239.99266 * 2 1 3 29 29 H 1.09007 * 109.47158 * 119.99400 * 2 1 3 30 30 H 1.08991 * 109.47787 * 59.99670 * 3 2 1 31 31 H 1.09005 * 109.47089 * 299.99529 * 3 2 1 32 32 H 1.00893 * 111.00341 * 56.03851 * 4 3 2 33 33 H 1.08999 * 109.53319 * 63.20916 * 7 5 4 34 34 H 1.08992 * 109.51748 * 303.01133 * 7 5 4 35 35 H 1.09002 * 109.48343 * 297.61643 * 8 7 5 36 36 H 1.08999 * 109.47546 * 177.59237 * 8 7 5 37 37 H 1.08995 * 109.48500 * 181.13987 * 10 9 8 38 38 H 1.09000 * 109.47974 * 301.16817 * 10 9 8 39 39 H 1.09000 * 109.47162 * 299.99893 * 14 13 11 40 40 H 1.09000 * 109.47054 * 59.99861 * 14 13 11 41 41 H 1.09003 * 109.47747 * 300.00027 * 15 14 13 42 42 H 1.09000 * 109.47155 * 60.00134 * 15 14 13 43 43 H 1.08991 * 109.47288 * 300.00334 * 16 15 14 44 44 H 1.09001 * 109.46805 * 60.00993 * 16 15 14 45 45 H 0.97003 * 119.99662 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 -0.0006 5 6 4.0353 2.8140 -0.0013 6 1 3.3790 3.4567 0.5854 7 6 4.1109 3.3351 -1.4400 8 6 4.7328 4.7340 -1.4353 9 8 6.0249 4.6778 -0.8275 10 6 6.0110 4.2425 0.5335 11 6 5.4406 2.8237 0.6083 12 1 5.3881 2.5067 1.6498 13 8 6.2841 1.9308 -0.1220 14 6 7.3254 1.3439 0.6611 15 6 8.1607 0.4111 -0.2182 16 6 9.2760 -0.2168 0.6201 17 6 10.0991 -1.1351 -0.2461 18 1 9.8518 -1.2582 -1.2902 19 6 11.1680 -1.8182 0.2943 20 7 11.4688 -1.6687 1.5658 21 14 12.1887 -2.9559 -0.7796 22 1 12.7863 -2.1792 -1.8953 23 1 13.2712 -3.5654 0.0341 24 1 11.3205 -4.0269 -1.3313 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8898 31 1 1.6766 1.9563 -0.8901 32 1 3.8702 0.9165 -0.7821 33 1 3.1076 3.3839 -1.8631 34 1 4.7275 2.6644 -2.0383 35 1 4.0946 5.4137 -0.8705 36 1 4.8285 5.0926 -2.4602 37 1 7.0274 4.2468 0.9270 38 1 5.3897 4.9157 1.1241 39 1 7.9630 2.1300 1.0656 40 1 6.8868 0.7742 1.4804 41 1 7.5230 -0.3751 -0.6224 42 1 8.5993 0.9804 -1.0377 43 1 9.9136 0.5695 1.0239 44 1 8.8377 -0.7862 1.4398 45 1 12.2206 -2.1495 1.9461 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686584997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:30 Heat of formation + Delta-G solvation = -139.941679 kcal Electronic energy + Delta-G solvation = -21484.025264 eV Core-core repulsion = 18306.630300 eV Total energy + Delta-G solvation = -3177.394963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90988 -38.19427 -37.63857 -35.83261 -34.53975 -33.43305 -31.54244 -30.98346 -28.46361 -26.61196 -24.99945 -24.28023 -23.98670 -22.31299 -22.03957 -20.99135 -18.57280 -17.58565 -17.50970 -17.08367 -16.72719 -16.48837 -16.33628 -15.96242 -15.71601 -15.23572 -15.09173 -14.48253 -14.26250 -14.07573 -13.78060 -13.65530 -13.33111 -13.15159 -12.95500 -12.75740 -12.55648 -12.51499 -12.28498 -12.11736 -11.98540 -11.90047 -11.69630 -11.62838 -11.42062 -11.38938 -11.18324 -10.94099 -10.55419 -10.01954 -9.28824 -8.20718 -6.31896 1.40173 1.43862 1.51795 2.40453 2.70710 3.00447 3.12319 3.17574 3.76395 3.78383 3.93054 4.06672 4.14180 4.20232 4.23401 4.29419 4.37739 4.42965 4.46117 4.53875 4.57684 4.65496 4.66882 4.74599 4.83563 4.84751 4.91083 4.96316 4.98154 5.02503 5.17742 5.20729 5.25382 5.30929 5.41311 5.49444 5.71315 5.82947 6.08488 6.19632 6.25316 6.40164 6.48893 6.83549 7.37020 8.91232 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.003737 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.587552 B = 7491.530901 C = 8641.958281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.062 3.938 4 N -0.694 5.694 5 C 0.098 3.902 6 H 0.105 0.895 7 C -0.174 4.174 8 C 0.060 3.940 9 O -0.398 6.398 10 C 0.039 3.961 11 C 0.058 3.942 12 H 0.072 0.928 13 O -0.379 6.379 14 C 0.079 3.921 15 C -0.092 4.092 16 C 0.030 3.970 17 C -0.547 4.547 18 H 0.058 0.942 19 C 0.000 4.000 20 N -0.932 5.932 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.266 1.266 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.344 0.656 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.052 0.948 42 H 0.048 0.952 43 H -0.005 1.005 44 H -0.004 1.004 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.449 11.798 -3.066 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.067 4.067 4 N -0.324 5.324 5 C -0.013 4.013 6 H 0.123 0.877 7 C -0.213 4.213 8 C -0.017 4.017 9 O -0.317 6.317 10 C -0.039 4.039 11 C -0.001 4.001 12 H 0.090 0.910 13 O -0.298 6.298 14 C 0.003 3.997 15 C -0.129 4.129 16 C -0.007 4.007 17 C -0.584 4.584 18 H 0.076 0.924 19 C -0.198 4.198 20 N -0.572 5.572 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.191 1.191 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.013 0.987 44 H 0.014 0.986 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.158 11.666 -2.535 25.169 hybrid contribution 0.588 -0.540 -0.702 1.064 sum -21.569 11.126 -3.237 24.485 Atomic orbital electron populations 1.21690 0.94274 1.02172 1.02228 1.21491 0.96582 0.96172 1.01926 1.22057 0.86551 0.97274 1.00797 1.60468 1.08062 1.12897 1.50926 1.21673 0.93366 0.90501 0.95738 0.87663 1.22779 1.01921 0.98575 0.98036 1.22685 0.84147 0.95505 0.99319 1.87956 1.30170 1.87151 1.26436 1.23195 1.02746 0.94162 0.83758 1.22978 0.90581 0.90008 0.96518 0.90958 1.87893 1.43423 1.61242 1.37219 1.22402 0.88624 0.94961 0.93712 1.21330 0.96179 0.97192 0.98238 1.18898 0.92705 0.94397 0.94733 1.21630 1.13641 1.26434 0.96733 0.92359 1.25990 0.98694 0.98608 0.96467 1.70089 1.29507 1.43804 1.13842 0.85474 0.78060 0.78829 0.78534 1.19222 1.20548 1.19121 0.92155 0.92233 0.92318 0.92668 0.92389 0.90667 0.94496 0.83795 0.89430 0.92447 0.91140 0.88217 0.89477 0.89696 0.94051 0.93785 0.92935 0.93319 0.98712 0.98596 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.12 -2.05 6.19 30.59 0.19 -1.86 16 3 C 0.06 1.01 5.49 86.30 0.47 1.49 16 4 N -0.69 -15.06 6.08 -490.90 -2.98 -18.04 16 5 C 0.10 1.97 2.33 45.04 0.11 2.07 16 6 H 0.11 1.68 7.80 -2.39 -0.02 1.66 16 7 C -0.17 -3.34 5.25 30.69 0.16 -3.18 16 8 C 0.06 1.13 6.84 72.01 0.49 1.62 16 9 O -0.40 -10.55 10.70 -141.82 -1.52 -12.07 16 10 C 0.04 0.90 6.48 72.01 0.47 1.37 16 11 C 0.06 1.48 2.64 30.69 0.08 1.56 16 12 H 0.07 1.83 7.79 -2.39 -0.02 1.81 16 13 O -0.38 -12.75 9.19 -141.82 -1.30 -14.05 16 14 C 0.08 3.00 5.75 71.98 0.41 3.41 16 15 C -0.09 -4.15 5.52 30.59 0.17 -3.98 16 16 C 0.03 1.64 4.97 29.85 0.15 1.79 16 17 C -0.55 -32.40 9.11 25.60 0.23 -32.16 16 18 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 19 C 0.00 0.01 5.46 84.65 0.46 0.48 16 20 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 21 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.07 1.14 8.06 -2.39 -0.02 1.12 16 31 H 0.04 0.54 7.54 -2.38 -0.02 0.52 16 32 H 0.34 8.38 8.42 -89.70 -0.75 7.63 16 33 H 0.09 1.29 7.58 -2.39 -0.02 1.27 16 34 H 0.06 1.44 7.77 -2.39 -0.02 1.42 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.09 2.18 7.83 -2.39 -0.02 2.17 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.53 7.83 -2.39 -0.02 1.51 16 40 H 0.04 1.64 8.09 -2.39 -0.02 1.62 16 41 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.05 2.22 8.14 -2.39 -0.02 2.21 16 43 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -67.66 358.53 0.79 -66.88 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.17 Total: 16.01 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 4.11 Total: -28.52 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -2.70 Total: -75.56 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -2.82 Total: -26.12 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.66 0.79 -66.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686584997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.065 kcal (2) G-P(sol) polarization free energy of solvation -67.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds