Wall clock time and date at job start Mon Mar 30 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99407 * 2 1 4 4 H 1.48495 * 109.47076 * 269.99920 * 3 2 1 5 5 H 1.48497 * 109.46805 * 30.00205 * 3 2 1 6 6 H 1.48498 * 109.46781 * 150.00048 * 3 2 1 7 7 C 1.37873 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00057 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00314 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47457 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47264 * 64.99865 * 12 11 10 14 14 C 1.42901 * 114.00134 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47091 * 179.97438 * 14 13 12 16 16 C 1.52994 * 109.47129 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.47178 * 60.00456 * 16 15 14 18 18 C 1.52994 * 109.47188 * 299.99983 * 16 15 14 19 19 C 1.53006 * 109.47165 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.46953 * 60.00158 * 19 18 16 21 21 C 1.53003 * 109.46971 * 300.00111 * 20 19 18 22 22 C 1.52998 * 109.47147 * 60.00123 * 21 20 19 23 23 H 0.96998 * 120.00659 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47551 * 60.00178 * 9 7 2 25 25 H 1.09004 * 109.47507 * 299.99841 * 9 7 2 26 26 H 1.09004 * 109.47487 * 59.99783 * 11 10 9 27 27 H 1.09002 * 109.46902 * 300.00077 * 11 10 9 28 28 H 1.09001 * 109.47289 * 304.99698 * 12 11 10 29 29 H 1.09004 * 109.47261 * 184.99954 * 12 11 10 30 30 H 1.08994 * 109.47036 * 300.00109 * 14 13 12 31 31 H 1.09002 * 109.46796 * 60.00253 * 14 13 12 32 32 H 1.09002 * 109.47184 * 300.00269 * 15 14 13 33 33 H 1.09003 * 109.47090 * 59.99900 * 15 14 13 34 34 H 1.00900 * 110.99466 * 300.00040 * 17 16 15 35 35 H 1.00898 * 111.00537 * 63.95051 * 17 16 15 36 36 H 1.08993 * 109.47370 * 299.99737 * 18 16 15 37 37 H 1.09004 * 109.47150 * 60.00210 * 18 16 15 38 38 H 1.09002 * 109.47050 * 300.00392 * 19 18 16 39 39 H 1.08994 * 109.46944 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.47333 * 180.02562 * 20 19 18 41 41 H 1.09003 * 109.47081 * 59.99678 * 20 19 18 42 42 H 1.08993 * 109.46779 * 299.99846 * 21 20 19 43 43 H 1.09003 * 109.46613 * 180.02562 * 21 20 19 44 44 H 1.09002 * 109.47009 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47584 * 60.00016 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5654 -4.8753 -0.0011 12 6 2.6484 -5.9561 -0.0017 13 8 3.3879 -5.8901 1.2193 14 6 4.4296 -6.8630 1.3213 15 6 5.1507 -6.6996 2.6608 16 6 6.2663 -7.7409 2.7697 17 7 7.2235 -7.5496 1.6718 18 6 5.6641 -9.1446 2.6826 19 6 6.7799 -10.1859 2.7909 20 6 7.5016 -10.0227 4.1301 21 6 8.1038 -8.6189 4.2172 22 6 6.9879 -7.5777 4.1090 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6249 -2.5571 0.8897 26 1 0.9455 -4.9822 -0.8913 27 1 0.9450 -4.9827 0.8886 28 1 3.3219 -5.7951 -0.8435 29 1 2.1824 -6.9374 -0.0917 30 1 4.0002 -7.8629 1.2590 31 1 5.1401 -6.7212 0.5069 32 1 5.5801 -5.6997 2.7227 33 1 4.4404 -6.8410 3.4754 34 1 6.7712 -7.6525 0.7758 35 1 7.6827 -6.6541 1.7443 36 1 4.9540 -9.2865 3.4972 37 1 5.1504 -9.2610 1.7283 38 1 7.4898 -10.0438 1.9760 39 1 6.3509 -11.1859 2.7283 40 1 8.2968 -10.7642 4.2072 41 1 6.7917 -10.1647 4.9450 42 1 8.8136 -8.4769 3.4024 43 1 8.6182 -8.5028 5.1712 44 1 7.4169 -6.5776 4.1715 45 1 6.2780 -7.7197 4.9238 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686911524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:52 Heat of formation + Delta-G solvation = -125.363257 kcal Electronic energy + Delta-G solvation = -21066.576145 eV Core-core repulsion = 17889.813349 eV Total energy + Delta-G solvation = -3176.762795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.79561 -37.86207 -36.33626 -34.29773 -32.72187 -31.08933 -30.52185 -29.26139 -27.81728 -26.70474 -23.79305 -22.60627 -22.39713 -21.90996 -20.71043 -19.13707 -16.89870 -16.41468 -16.27438 -15.90951 -15.47909 -15.23963 -14.91075 -14.39148 -14.36893 -14.29320 -13.94860 -13.67269 -13.21577 -12.90192 -12.46131 -12.35761 -12.22445 -12.07585 -11.68709 -11.50585 -11.21460 -11.19278 -11.08541 -10.81863 -10.76609 -10.76028 -10.51470 -10.34418 -10.07664 -9.99541 -9.42471 -9.08630 -8.83534 -8.80427 -8.15932 -6.09555 -4.11003 3.31225 3.35921 3.41919 3.71720 4.32038 4.35734 4.43861 4.58138 4.73434 4.84472 4.92937 4.99412 5.11702 5.15781 5.22915 5.26780 5.29517 5.32940 5.39879 5.48518 5.51161 5.57058 5.64017 5.74670 5.81003 5.87016 5.96680 6.00901 6.03376 6.05514 6.07099 6.10379 6.16017 6.22809 6.34212 6.99409 7.10653 7.26034 7.40646 7.44867 7.81135 8.16753 8.59461 9.02424 9.53658 11.02118 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.028830 B = 0.002880 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.978426 B = 9720.770682 C =10368.203711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.063 3.937 12 C 0.069 3.931 13 O -0.373 6.373 14 C 0.060 3.940 15 C -0.149 4.149 16 C 0.125 3.875 17 N -0.836 5.836 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.105 4.105 23 H 0.264 0.736 24 H 0.005 0.995 25 H 0.006 0.994 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.339 0.661 35 H 0.342 0.658 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.774 -20.750 5.643 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.014 4.014 12 C -0.008 4.008 13 O -0.292 6.292 14 C -0.017 4.017 15 C -0.189 4.189 16 C 0.032 3.968 17 N -0.366 5.366 18 C -0.147 4.147 19 C -0.149 4.149 20 C -0.154 4.154 21 C -0.148 4.148 22 C -0.143 4.143 23 H 0.073 0.927 24 H 0.022 0.978 25 H 0.023 0.977 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.157 -21.098 6.094 25.600 hybrid contribution -0.705 1.546 -0.525 1.778 sum 12.452 -19.552 5.569 23.840 Atomic orbital electron populations 1.69965 1.06100 1.27139 1.50686 1.24957 0.94991 0.99442 0.95178 0.86327 0.79690 0.82223 0.78208 1.20467 1.21056 1.19609 1.21057 0.94072 0.89360 1.50646 0.91569 1.20211 0.88801 0.83670 0.95344 1.87910 1.35189 1.12646 1.95159 1.22256 0.93708 0.85667 0.99806 1.22565 0.94021 0.97168 0.87018 1.88038 1.47211 1.55576 1.38404 1.22487 0.90035 0.91815 0.97368 1.22337 0.98556 1.00561 0.97398 1.20723 0.89937 0.93963 0.92158 1.58975 1.33363 1.39216 1.05082 1.21627 0.97623 0.93639 1.01771 1.21420 0.97884 0.97355 0.98216 1.21496 0.99397 0.96992 0.97515 1.21411 0.97869 0.94167 1.01397 1.21543 0.97883 0.99346 0.95567 0.92667 0.97768 0.97655 0.92989 0.93689 0.92868 0.92921 0.93540 0.94014 0.90837 0.90678 0.84726 0.84554 0.91709 0.92021 0.90703 0.92969 0.92526 0.92687 0.90719 0.92886 0.91999 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -15.56 9.43 -34.44 -0.32 -15.88 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.51 5.69 36.00 0.20 5.72 16 10 O -0.39 -9.91 10.29 -40.08 -0.41 -10.32 16 11 C 0.06 1.23 6.32 37.16 0.23 1.47 16 12 C 0.07 1.09 6.32 37.16 0.23 1.33 16 13 O -0.37 -6.40 10.31 -40.08 -0.41 -6.82 16 14 C 0.06 0.74 5.25 37.16 0.20 0.93 16 15 C -0.15 -1.67 4.82 -26.74 -0.13 -1.80 16 16 C 0.13 1.11 0.58 -131.60 -0.08 1.03 16 17 N -0.84 -6.97 7.28 0.74 0.01 -6.97 16 18 C -0.11 -0.92 4.53 -26.73 -0.12 -1.04 16 19 C -0.11 -0.89 5.77 -26.72 -0.15 -1.04 16 20 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 21 C -0.11 -0.89 5.77 -26.73 -0.15 -1.04 16 22 C -0.11 -0.91 4.85 -26.73 -0.13 -1.04 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.50 6.43 -51.93 -0.33 0.17 16 31 H 0.04 0.48 6.66 -51.93 -0.35 0.13 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.34 2.76 7.16 -39.29 -0.28 2.48 16 35 H 0.34 2.79 8.98 -39.29 -0.35 2.43 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 38 H 0.07 0.65 7.60 -51.93 -0.39 0.25 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.65 7.60 -51.93 -0.39 0.25 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -32.39 351.87 -8.60 -41.00 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -8.32 Total: -1.86 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.48 Total: -10.88 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.74 Total: -33.60 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.83 Total: -17.14 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.39 -8.60 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686911524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.366 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds