Wall clock time and date at job start Mon Mar 30 2020 05:15:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86806 * 119.99407 * 2 1
4 4 H 1.48495 * 109.47076 * 269.99920 * 3 2 1
5 5 H 1.48497 * 109.46805 * 30.00205 * 3 2 1
6 6 H 1.48498 * 109.46781 * 150.00048 * 3 2 1
7 7 C 1.37873 * 120.00216 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99789 * 179.97438 * 7 2 1
9 9 C 1.50695 * 120.00057 * 359.97438 * 7 2 1
10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2
11 11 C 1.42899 * 114.00314 * 180.02562 * 10 9 7
12 12 C 1.52997 * 109.47457 * 179.97438 * 11 10 9
13 13 O 1.42905 * 109.47264 * 64.99865 * 12 11 10
14 14 C 1.42901 * 114.00134 * 179.97438 * 13 12 11
15 15 C 1.52996 * 109.47091 * 179.97438 * 14 13 12
16 16 C 1.52994 * 109.47129 * 180.02562 * 15 14 13
17 17 N 1.46901 * 109.47178 * 60.00456 * 16 15 14
18 18 C 1.52994 * 109.47188 * 299.99983 * 16 15 14
19 19 C 1.53006 * 109.47165 * 179.97438 * 18 16 15
20 20 C 1.53006 * 109.46953 * 60.00158 * 19 18 16
21 21 C 1.53003 * 109.46971 * 300.00111 * 20 19 18
22 22 C 1.52998 * 109.47147 * 60.00123 * 21 20 19
23 23 H 0.96998 * 120.00659 * 359.97438 * 1 2 3
24 24 H 1.08999 * 109.47551 * 60.00178 * 9 7 2
25 25 H 1.09004 * 109.47507 * 299.99841 * 9 7 2
26 26 H 1.09004 * 109.47487 * 59.99783 * 11 10 9
27 27 H 1.09002 * 109.46902 * 300.00077 * 11 10 9
28 28 H 1.09001 * 109.47289 * 304.99698 * 12 11 10
29 29 H 1.09004 * 109.47261 * 184.99954 * 12 11 10
30 30 H 1.08994 * 109.47036 * 300.00109 * 14 13 12
31 31 H 1.09002 * 109.46796 * 60.00253 * 14 13 12
32 32 H 1.09002 * 109.47184 * 300.00269 * 15 14 13
33 33 H 1.09003 * 109.47090 * 59.99900 * 15 14 13
34 34 H 1.00900 * 110.99466 * 300.00040 * 17 16 15
35 35 H 1.00898 * 111.00537 * 63.95051 * 17 16 15
36 36 H 1.08993 * 109.47370 * 299.99737 * 18 16 15
37 37 H 1.09004 * 109.47150 * 60.00210 * 18 16 15
38 38 H 1.09002 * 109.47050 * 300.00392 * 19 18 16
39 39 H 1.08994 * 109.46944 * 180.02562 * 19 18 16
40 40 H 1.08996 * 109.47333 * 180.02562 * 20 19 18
41 41 H 1.09003 * 109.47081 * 59.99678 * 20 19 18
42 42 H 1.08993 * 109.46779 * 299.99846 * 21 20 19
43 43 H 1.09003 * 109.46613 * 180.02562 * 21 20 19
44 44 H 1.09002 * 109.47009 * 179.97438 * 22 21 20
45 45 H 1.09003 * 109.47584 * 60.00016 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6179 0.0000
4 1 2.4965 2.0466 -1.4000
5 1 1.4464 2.6526 0.7001
6 1 3.5466 1.4404 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0010
9 6 1.2512 -2.4991 -0.0005
10 8 2.1798 -3.5852 -0.0005
11 6 1.5654 -4.8753 -0.0011
12 6 2.6484 -5.9561 -0.0017
13 8 3.3879 -5.8901 1.2193
14 6 4.4296 -6.8630 1.3213
15 6 5.1507 -6.6996 2.6608
16 6 6.2663 -7.7409 2.7697
17 7 7.2235 -7.5496 1.6718
18 6 5.6641 -9.1446 2.6826
19 6 6.7799 -10.1859 2.7909
20 6 7.5016 -10.0227 4.1301
21 6 8.1038 -8.6189 4.2172
22 6 6.9879 -7.5777 4.1090
23 1 -0.4851 0.8400 0.0004
24 1 0.6242 -2.5567 -0.8903
25 1 0.6249 -2.5571 0.8897
26 1 0.9455 -4.9822 -0.8913
27 1 0.9450 -4.9827 0.8886
28 1 3.3219 -5.7951 -0.8435
29 1 2.1824 -6.9374 -0.0917
30 1 4.0002 -7.8629 1.2590
31 1 5.1401 -6.7212 0.5069
32 1 5.5801 -5.6997 2.7227
33 1 4.4404 -6.8410 3.4754
34 1 6.7712 -7.6525 0.7758
35 1 7.6827 -6.6541 1.7443
36 1 4.9540 -9.2865 3.4972
37 1 5.1504 -9.2610 1.7283
38 1 7.4898 -10.0438 1.9760
39 1 6.3509 -11.1859 2.7283
40 1 8.2968 -10.7642 4.2072
41 1 6.7917 -10.1647 4.9450
42 1 8.8136 -8.4769 3.4024
43 1 8.6182 -8.5028 5.1712
44 1 7.4169 -6.5776 4.1715
45 1 6.2780 -7.7197 4.9238
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000686911524.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:15:52
Heat of formation + Delta-G solvation = -125.363257 kcal
Electronic energy + Delta-G solvation = -21066.576145 eV
Core-core repulsion = 17889.813349 eV
Total energy + Delta-G solvation = -3176.762795 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 271.193 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-39.79561 -37.86207 -36.33626 -34.29773 -32.72187 -31.08933 -30.52185 -29.26139
-27.81728 -26.70474 -23.79305 -22.60627 -22.39713 -21.90996 -20.71043 -19.13707
-16.89870 -16.41468 -16.27438 -15.90951 -15.47909 -15.23963 -14.91075 -14.39148
-14.36893 -14.29320 -13.94860 -13.67269 -13.21577 -12.90192 -12.46131 -12.35761
-12.22445 -12.07585 -11.68709 -11.50585 -11.21460 -11.19278 -11.08541 -10.81863
-10.76609 -10.76028 -10.51470 -10.34418 -10.07664 -9.99541 -9.42471 -9.08630
-8.83534 -8.80427 -8.15932 -6.09555 -4.11003 3.31225 3.35921 3.41919
3.71720 4.32038 4.35734 4.43861 4.58138 4.73434 4.84472 4.92937
4.99412 5.11702 5.15781 5.22915 5.26780 5.29517 5.32940 5.39879
5.48518 5.51161 5.57058 5.64017 5.74670 5.81003 5.87016 5.96680
6.00901 6.03376 6.05514 6.07099 6.10379 6.16017 6.22809 6.34212
6.99409 7.10653 7.26034 7.40646 7.44867 7.81135 8.16753 8.59461
9.02424 9.53658 11.02118
Molecular weight = 271.19amu
Principal moments of inertia in cm(-1)
A = 0.028830 B = 0.002880 C = 0.002700
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 970.978426 B = 9720.770682 C =10368.203711
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.055 3.945
3 Si 0.908 3.092
4 H -0.279 1.279
5 H -0.285 1.285
6 H -0.271 1.271
7 C -0.513 4.513
8 H 0.066 0.934
9 C 0.194 3.806
10 O -0.389 6.389
11 C 0.063 3.937
12 C 0.069 3.931
13 O -0.373 6.373
14 C 0.060 3.940
15 C -0.149 4.149
16 C 0.125 3.875
17 N -0.836 5.836
18 C -0.109 4.109
19 C -0.111 4.111
20 C -0.116 4.116
21 C -0.111 4.111
22 C -0.105 4.105
23 H 0.264 0.736
24 H 0.005 0.995
25 H 0.006 0.994
26 H 0.052 0.948
27 H 0.045 0.955
28 H 0.053 0.947
29 H 0.053 0.947
30 H 0.047 0.953
31 H 0.042 0.958
32 H 0.073 0.927
33 H 0.075 0.925
34 H 0.339 0.661
35 H 0.342 0.658
36 H 0.064 0.936
37 H 0.061 0.939
38 H 0.074 0.926
39 H 0.052 0.948
40 H 0.056 0.944
41 H 0.054 0.946
42 H 0.074 0.926
43 H 0.052 0.948
44 H 0.061 0.939
45 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.774 -20.750 5.643 25.011
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.146 4.146
3 Si 0.736 3.264
4 H -0.205 1.205
5 H -0.211 1.211
6 H -0.196 1.196
7 C -0.551 4.551
8 H 0.084 0.916
9 C 0.120 3.880
10 O -0.309 6.309
11 C -0.014 4.014
12 C -0.008 4.008
13 O -0.292 6.292
14 C -0.017 4.017
15 C -0.189 4.189
16 C 0.032 3.968
17 N -0.366 5.366
18 C -0.147 4.147
19 C -0.149 4.149
20 C -0.154 4.154
21 C -0.148 4.148
22 C -0.143 4.143
23 H 0.073 0.927
24 H 0.022 0.978
25 H 0.023 0.977
26 H 0.070 0.930
27 H 0.063 0.937
28 H 0.071 0.929
29 H 0.071 0.929
30 H 0.065 0.935
31 H 0.060 0.940
32 H 0.092 0.908
33 H 0.093 0.907
34 H 0.153 0.847
35 H 0.154 0.846
36 H 0.083 0.917
37 H 0.080 0.920
38 H 0.093 0.907
39 H 0.070 0.930
40 H 0.075 0.925
41 H 0.073 0.927
42 H 0.093 0.907
43 H 0.071 0.929
44 H 0.080 0.920
45 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 13.157 -21.098 6.094 25.600
hybrid contribution -0.705 1.546 -0.525 1.778
sum 12.452 -19.552 5.569 23.840
Atomic orbital electron populations
1.69965 1.06100 1.27139 1.50686 1.24957 0.94991 0.99442 0.95178
0.86327 0.79690 0.82223 0.78208 1.20467 1.21056 1.19609 1.21057
0.94072 0.89360 1.50646 0.91569 1.20211 0.88801 0.83670 0.95344
1.87910 1.35189 1.12646 1.95159 1.22256 0.93708 0.85667 0.99806
1.22565 0.94021 0.97168 0.87018 1.88038 1.47211 1.55576 1.38404
1.22487 0.90035 0.91815 0.97368 1.22337 0.98556 1.00561 0.97398
1.20723 0.89937 0.93963 0.92158 1.58975 1.33363 1.39216 1.05082
1.21627 0.97623 0.93639 1.01771 1.21420 0.97884 0.97355 0.98216
1.21496 0.99397 0.96992 0.97515 1.21411 0.97869 0.94167 1.01397
1.21543 0.97883 0.99346 0.95567 0.92667 0.97768 0.97655 0.92989
0.93689 0.92868 0.92921 0.93540 0.94014 0.90837 0.90678 0.84726
0.84554 0.91709 0.92021 0.90703 0.92969 0.92526 0.92687 0.90719
0.92886 0.91999 0.91673
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
3 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16
4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
7 C -0.51 -15.56 9.43 -34.44 -0.32 -15.88 16
8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16
9 C 0.19 5.51 5.69 36.00 0.20 5.72 16
10 O -0.39 -9.91 10.29 -40.08 -0.41 -10.32 16
11 C 0.06 1.23 6.32 37.16 0.23 1.47 16
12 C 0.07 1.09 6.32 37.16 0.23 1.33 16
13 O -0.37 -6.40 10.31 -40.08 -0.41 -6.82 16
14 C 0.06 0.74 5.25 37.16 0.20 0.93 16
15 C -0.15 -1.67 4.82 -26.74 -0.13 -1.80 16
16 C 0.13 1.11 0.58 -131.60 -0.08 1.03 16
17 N -0.84 -6.97 7.28 0.74 0.01 -6.97 16
18 C -0.11 -0.92 4.53 -26.73 -0.12 -1.04 16
19 C -0.11 -0.89 5.77 -26.72 -0.15 -1.04 16
20 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16
21 C -0.11 -0.89 5.77 -26.73 -0.15 -1.04 16
22 C -0.11 -0.91 4.85 -26.73 -0.13 -1.04 16
23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
24 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16
25 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16
26 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16
27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16
28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
30 H 0.05 0.50 6.43 -51.93 -0.33 0.17 16
31 H 0.04 0.48 6.66 -51.93 -0.35 0.13 16
32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
34 H 0.34 2.76 7.16 -39.29 -0.28 2.48 16
35 H 0.34 2.79 8.98 -39.29 -0.35 2.43 16
36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16
38 H 0.07 0.65 7.60 -51.93 -0.39 0.25 16
39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16
42 H 0.07 0.65 7.60 -51.93 -0.39 0.25 16
43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
LS Contribution 351.87 15.07 5.30 5.30
Total: -1.00 -32.39 351.87 -8.60 -41.00
By element:
Atomic # 1 Polarization: 6.46 SS G_CDS: -8.32 Total: -1.86 kcal
Atomic # 6 Polarization: -10.41 SS G_CDS: -0.48 Total: -10.88 kcal
Atomic # 7 Polarization: -34.35 SS G_CDS: 0.74 Total: -33.60 kcal
Atomic # 8 Polarization: -16.31 SS G_CDS: -0.83 Total: -17.14 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -32.39 -8.60 -41.00 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000686911524.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -84.366 kcal
(2) G-P(sol) polarization free energy of solvation -32.395 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.761 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.363 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds