Wall clock time and date at job start Mon Mar 30 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99407 * 2 1 4 4 H 1.48495 * 109.47076 * 269.99920 * 3 2 1 5 5 H 1.48497 * 109.46805 * 30.00205 * 3 2 1 6 6 H 1.48498 * 109.46781 * 150.00048 * 3 2 1 7 7 C 1.37873 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00057 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00314 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47457 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.47264 * 64.99865 * 12 11 10 14 14 C 1.42901 * 114.00134 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47091 * 179.97438 * 14 13 12 16 16 C 1.52994 * 109.47129 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.47178 * 60.00456 * 16 15 14 18 18 C 1.52994 * 109.47188 * 299.99983 * 16 15 14 19 19 C 1.53006 * 109.47165 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.46953 * 60.00158 * 19 18 16 21 21 C 1.53003 * 109.46971 * 300.00111 * 20 19 18 22 22 C 1.52998 * 109.47147 * 60.00123 * 21 20 19 23 23 H 0.96998 * 120.00659 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47551 * 60.00178 * 9 7 2 25 25 H 1.09004 * 109.47507 * 299.99841 * 9 7 2 26 26 H 1.09004 * 109.47487 * 59.99783 * 11 10 9 27 27 H 1.09002 * 109.46902 * 300.00077 * 11 10 9 28 28 H 1.09001 * 109.47289 * 304.99698 * 12 11 10 29 29 H 1.09004 * 109.47261 * 184.99954 * 12 11 10 30 30 H 1.08994 * 109.47036 * 300.00109 * 14 13 12 31 31 H 1.09002 * 109.46796 * 60.00253 * 14 13 12 32 32 H 1.09002 * 109.47184 * 300.00269 * 15 14 13 33 33 H 1.09003 * 109.47090 * 59.99900 * 15 14 13 34 34 H 1.00900 * 110.99466 * 300.00040 * 17 16 15 35 35 H 1.00898 * 111.00537 * 63.95051 * 17 16 15 36 36 H 1.08993 * 109.47370 * 299.99737 * 18 16 15 37 37 H 1.09004 * 109.47150 * 60.00210 * 18 16 15 38 38 H 1.09002 * 109.47050 * 300.00392 * 19 18 16 39 39 H 1.08994 * 109.46944 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.47333 * 180.02562 * 20 19 18 41 41 H 1.09003 * 109.47081 * 59.99678 * 20 19 18 42 42 H 1.08993 * 109.46779 * 299.99846 * 21 20 19 43 43 H 1.09003 * 109.46613 * 180.02562 * 21 20 19 44 44 H 1.09002 * 109.47009 * 179.97438 * 22 21 20 45 45 H 1.09003 * 109.47584 * 60.00016 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5654 -4.8753 -0.0011 12 6 2.6484 -5.9561 -0.0017 13 8 3.3879 -5.8901 1.2193 14 6 4.4296 -6.8630 1.3213 15 6 5.1507 -6.6996 2.6608 16 6 6.2663 -7.7409 2.7697 17 7 7.2235 -7.5496 1.6718 18 6 5.6641 -9.1446 2.6826 19 6 6.7799 -10.1859 2.7909 20 6 7.5016 -10.0227 4.1301 21 6 8.1038 -8.6189 4.2172 22 6 6.9879 -7.5777 4.1090 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6249 -2.5571 0.8897 26 1 0.9455 -4.9822 -0.8913 27 1 0.9450 -4.9827 0.8886 28 1 3.3219 -5.7951 -0.8435 29 1 2.1824 -6.9374 -0.0917 30 1 4.0002 -7.8629 1.2590 31 1 5.1401 -6.7212 0.5069 32 1 5.5801 -5.6997 2.7227 33 1 4.4404 -6.8410 3.4754 34 1 6.7712 -7.6525 0.7758 35 1 7.6827 -6.6541 1.7443 36 1 4.9540 -9.2865 3.4972 37 1 5.1504 -9.2610 1.7283 38 1 7.4898 -10.0438 1.9760 39 1 6.3509 -11.1859 2.7283 40 1 8.2968 -10.7642 4.2072 41 1 6.7917 -10.1647 4.9450 42 1 8.8136 -8.4769 3.4024 43 1 8.6182 -8.5028 5.1712 44 1 7.4169 -6.5776 4.1715 45 1 6.2780 -7.7197 4.9238 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686911524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:52 Heat of formation + Delta-G solvation = -147.044706 kcal Electronic energy + Delta-G solvation = -21067.516323 eV Core-core repulsion = 17889.813349 eV Total energy + Delta-G solvation = -3177.702974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56252 -39.21115 -38.04498 -35.14875 -34.87646 -31.91907 -31.55733 -30.42646 -29.08596 -28.39254 -24.62172 -24.58175 -23.48393 -23.23176 -21.46232 -19.83403 -18.68843 -18.05271 -17.72906 -16.87415 -16.68852 -16.36123 -16.31625 -15.88229 -15.80179 -15.34862 -14.92884 -14.66406 -14.36256 -14.22648 -13.70329 -13.52996 -13.08466 -13.04676 -12.97417 -12.88957 -12.74934 -12.66808 -12.35039 -12.11120 -12.07937 -11.86184 -11.79627 -11.40109 -11.32594 -11.02836 -10.91512 -10.78901 -10.52564 -10.28281 -9.54256 -8.34977 -6.47858 1.37939 1.41331 1.53496 2.32831 2.63657 2.98449 3.14647 3.59803 3.68860 3.86789 3.98620 4.05993 4.09984 4.20250 4.27218 4.34947 4.38424 4.44433 4.53022 4.55319 4.61048 4.66208 4.71272 4.73996 4.81909 4.84152 4.91390 5.03273 5.06589 5.13628 5.15347 5.18015 5.39722 5.42275 5.44740 5.46366 5.51382 5.70341 5.92409 6.26760 6.28972 6.50308 6.59537 6.78212 7.24120 8.77514 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.028830 B = 0.002880 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.978426 B = 9720.770682 C =10368.203711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.050 3.950 12 C 0.074 3.926 13 O -0.411 6.411 14 C 0.057 3.943 15 C -0.145 4.145 16 C 0.134 3.866 17 N -0.833 5.833 18 C -0.109 4.109 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.107 4.107 22 C -0.107 4.107 23 H 0.272 0.728 24 H -0.009 1.009 25 H -0.017 1.017 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.341 0.659 35 H 0.342 0.658 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.799 -21.295 5.476 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.328 6.328 11 C -0.027 4.027 12 C -0.002 4.002 13 O -0.331 6.331 14 C -0.019 4.019 15 C -0.185 4.185 16 C 0.041 3.959 17 N -0.363 5.363 18 C -0.147 4.147 19 C -0.145 4.145 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.145 4.145 23 H 0.081 0.919 24 H 0.009 0.991 25 H 0.001 0.999 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.186 -21.676 5.921 26.573 hybrid contribution -1.057 1.623 -0.457 1.990 sum 13.128 -20.053 5.464 24.583 Atomic orbital electron populations 1.70066 1.07750 1.28763 1.50349 1.25995 0.96028 1.03458 0.93780 0.85155 0.78288 0.76815 0.78984 1.18990 1.19708 1.19033 1.21379 0.94029 0.90940 1.52520 0.92254 1.19847 0.88633 0.84719 0.93515 1.87859 1.35421 1.14312 1.95221 1.22670 0.95558 0.83963 1.00522 1.22568 0.93328 0.97415 0.86870 1.87985 1.48605 1.57549 1.38944 1.22693 0.89331 0.91757 0.98083 1.22353 0.98960 1.00394 0.96778 1.20645 0.89194 0.93570 0.92531 1.58988 1.33004 1.39267 1.05048 1.21633 0.97850 0.93268 1.01906 1.21388 0.97506 0.97535 0.98109 1.21505 0.99641 0.96820 0.97428 1.21374 0.97423 0.94202 1.01469 1.21557 0.98118 0.99434 0.95385 0.91925 0.99135 0.99918 0.91151 0.94051 0.92425 0.88764 0.91482 0.93023 0.92711 0.91498 0.84458 0.84453 0.91714 0.91773 0.91324 0.92161 0.91799 0.92489 0.91338 0.92302 0.92465 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.99 45.23 29.54 68.60 2.03 47.25 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -34.06 9.43 25.60 0.24 -33.82 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 9 C 0.21 12.19 5.69 71.23 0.41 12.60 16 10 O -0.41 -21.23 10.29 -144.35 -1.49 -22.72 16 11 C 0.05 1.93 6.32 71.98 0.45 2.39 16 12 C 0.07 2.25 6.32 71.98 0.45 2.71 16 13 O -0.41 -13.85 10.31 -144.35 -1.49 -15.33 16 14 C 0.06 1.35 5.25 71.98 0.38 1.73 16 15 C -0.15 -3.21 4.82 30.59 0.15 -3.06 16 16 C 0.13 2.25 0.58 3.53 0.00 2.25 16 17 N -0.83 -13.00 7.28 -151.57 -1.10 -14.11 16 18 C -0.11 -1.67 4.53 30.59 0.14 -1.53 16 19 C -0.11 -1.52 5.77 30.60 0.18 -1.34 16 20 C -0.12 -1.58 5.92 30.60 0.18 -1.40 16 21 C -0.11 -1.58 5.77 30.59 0.18 -1.40 16 22 C -0.11 -1.76 4.85 30.60 0.15 -1.61 16 23 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 26 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.07 1.30 6.43 -2.39 -0.02 1.28 16 31 H 0.05 1.10 6.66 -2.39 -0.02 1.09 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.34 5.08 7.16 -89.69 -0.64 4.44 16 35 H 0.34 5.35 8.98 -89.70 -0.81 4.55 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.95 6.43 -2.39 -0.02 0.93 16 38 H 0.07 1.07 7.60 -2.39 -0.02 1.05 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 1.11 7.60 -2.39 -0.02 1.09 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -69.85 351.87 1.11 -68.74 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -0.50 Total: 14.50 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 3.37 Total: -21.70 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -0.82 Total: -70.74 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -2.97 Total: -38.05 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.85 1.11 -68.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686911524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.304 kcal (2) G-P(sol) polarization free energy of solvation -69.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds