Wall clock time and date at job start Mon Mar 30 2020 05:15:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86806 * 119.99407 * 2 1
4 4 H 1.48495 * 109.47076 * 269.99920 * 3 2 1
5 5 H 1.48497 * 109.46805 * 30.00205 * 3 2 1
6 6 H 1.48498 * 109.46781 * 150.00048 * 3 2 1
7 7 C 1.37873 * 120.00216 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99789 * 179.97438 * 7 2 1
9 9 C 1.50695 * 120.00057 * 359.97438 * 7 2 1
10 10 O 1.42897 * 109.47146 * 180.02562 * 9 7 2
11 11 C 1.42899 * 114.00314 * 180.02562 * 10 9 7
12 12 C 1.52997 * 109.47457 * 179.97438 * 11 10 9
13 13 O 1.42905 * 109.47264 * 64.99865 * 12 11 10
14 14 C 1.42901 * 114.00134 * 179.97438 * 13 12 11
15 15 C 1.52996 * 109.47091 * 179.97438 * 14 13 12
16 16 C 1.52994 * 109.47129 * 180.02562 * 15 14 13
17 17 N 1.46901 * 109.47178 * 60.00456 * 16 15 14
18 18 C 1.52994 * 109.47188 * 299.99983 * 16 15 14
19 19 C 1.53006 * 109.47165 * 179.97438 * 18 16 15
20 20 C 1.53006 * 109.46953 * 60.00158 * 19 18 16
21 21 C 1.53003 * 109.46971 * 300.00111 * 20 19 18
22 22 C 1.52998 * 109.47147 * 60.00123 * 21 20 19
23 23 H 0.96998 * 120.00659 * 359.97438 * 1 2 3
24 24 H 1.08999 * 109.47551 * 60.00178 * 9 7 2
25 25 H 1.09004 * 109.47507 * 299.99841 * 9 7 2
26 26 H 1.09004 * 109.47487 * 59.99783 * 11 10 9
27 27 H 1.09002 * 109.46902 * 300.00077 * 11 10 9
28 28 H 1.09001 * 109.47289 * 304.99698 * 12 11 10
29 29 H 1.09004 * 109.47261 * 184.99954 * 12 11 10
30 30 H 1.08994 * 109.47036 * 300.00109 * 14 13 12
31 31 H 1.09002 * 109.46796 * 60.00253 * 14 13 12
32 32 H 1.09002 * 109.47184 * 300.00269 * 15 14 13
33 33 H 1.09003 * 109.47090 * 59.99900 * 15 14 13
34 34 H 1.00900 * 110.99466 * 300.00040 * 17 16 15
35 35 H 1.00898 * 111.00537 * 63.95051 * 17 16 15
36 36 H 1.08993 * 109.47370 * 299.99737 * 18 16 15
37 37 H 1.09004 * 109.47150 * 60.00210 * 18 16 15
38 38 H 1.09002 * 109.47050 * 300.00392 * 19 18 16
39 39 H 1.08994 * 109.46944 * 180.02562 * 19 18 16
40 40 H 1.08996 * 109.47333 * 180.02562 * 20 19 18
41 41 H 1.09003 * 109.47081 * 59.99678 * 20 19 18
42 42 H 1.08993 * 109.46779 * 299.99846 * 21 20 19
43 43 H 1.09003 * 109.46613 * 180.02562 * 21 20 19
44 44 H 1.09002 * 109.47009 * 179.97438 * 22 21 20
45 45 H 1.09003 * 109.47584 * 60.00016 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6179 0.0000
4 1 2.4965 2.0466 -1.4000
5 1 1.4464 2.6526 0.7001
6 1 3.5466 1.4404 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0010
9 6 1.2512 -2.4991 -0.0005
10 8 2.1798 -3.5852 -0.0005
11 6 1.5654 -4.8753 -0.0011
12 6 2.6484 -5.9561 -0.0017
13 8 3.3879 -5.8901 1.2193
14 6 4.4296 -6.8630 1.3213
15 6 5.1507 -6.6996 2.6608
16 6 6.2663 -7.7409 2.7697
17 7 7.2235 -7.5496 1.6718
18 6 5.6641 -9.1446 2.6826
19 6 6.7799 -10.1859 2.7909
20 6 7.5016 -10.0227 4.1301
21 6 8.1038 -8.6189 4.2172
22 6 6.9879 -7.5777 4.1090
23 1 -0.4851 0.8400 0.0004
24 1 0.6242 -2.5567 -0.8903
25 1 0.6249 -2.5571 0.8897
26 1 0.9455 -4.9822 -0.8913
27 1 0.9450 -4.9827 0.8886
28 1 3.3219 -5.7951 -0.8435
29 1 2.1824 -6.9374 -0.0917
30 1 4.0002 -7.8629 1.2590
31 1 5.1401 -6.7212 0.5069
32 1 5.5801 -5.6997 2.7227
33 1 4.4404 -6.8410 3.4754
34 1 6.7712 -7.6525 0.7758
35 1 7.6827 -6.6541 1.7443
36 1 4.9540 -9.2865 3.4972
37 1 5.1504 -9.2610 1.7283
38 1 7.4898 -10.0438 1.9760
39 1 6.3509 -11.1859 2.7283
40 1 8.2968 -10.7642 4.2072
41 1 6.7917 -10.1647 4.9450
42 1 8.8136 -8.4769 3.4024
43 1 8.6182 -8.5028 5.1712
44 1 7.4169 -6.5776 4.1715
45 1 6.2780 -7.7197 4.9238
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000686911524.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:15:52
Heat of formation + Delta-G solvation = -147.044706 kcal
Electronic energy + Delta-G solvation = -21067.516323 eV
Core-core repulsion = 17889.813349 eV
Total energy + Delta-G solvation = -3177.702974 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 271.193 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.56252 -39.21115 -38.04498 -35.14875 -34.87646 -31.91907 -31.55733 -30.42646
-29.08596 -28.39254 -24.62172 -24.58175 -23.48393 -23.23176 -21.46232 -19.83403
-18.68843 -18.05271 -17.72906 -16.87415 -16.68852 -16.36123 -16.31625 -15.88229
-15.80179 -15.34862 -14.92884 -14.66406 -14.36256 -14.22648 -13.70329 -13.52996
-13.08466 -13.04676 -12.97417 -12.88957 -12.74934 -12.66808 -12.35039 -12.11120
-12.07937 -11.86184 -11.79627 -11.40109 -11.32594 -11.02836 -10.91512 -10.78901
-10.52564 -10.28281 -9.54256 -8.34977 -6.47858 1.37939 1.41331 1.53496
2.32831 2.63657 2.98449 3.14647 3.59803 3.68860 3.86789 3.98620
4.05993 4.09984 4.20250 4.27218 4.34947 4.38424 4.44433 4.53022
4.55319 4.61048 4.66208 4.71272 4.73996 4.81909 4.84152 4.91390
5.03273 5.06589 5.13628 5.15347 5.18015 5.39722 5.42275 5.44740
5.46366 5.51382 5.70341 5.92409 6.26760 6.28972 6.50308 6.59537
6.78212 7.24120 8.77514
Molecular weight = 271.19amu
Principal moments of inertia in cm(-1)
A = 0.028830 B = 0.002880 C = 0.002700
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 970.978426 B = 9720.770682 C =10368.203711
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.006 3.994
3 Si 0.985 3.015
4 H -0.265 1.265
5 H -0.272 1.272
6 H -0.266 1.266
7 C -0.551 4.551
8 H 0.059 0.941
9 C 0.208 3.792
10 O -0.408 6.408
11 C 0.050 3.950
12 C 0.074 3.926
13 O -0.411 6.411
14 C 0.057 3.943
15 C -0.145 4.145
16 C 0.134 3.866
17 N -0.833 5.833
18 C -0.109 4.109
19 C -0.108 4.108
20 C -0.116 4.116
21 C -0.107 4.107
22 C -0.107 4.107
23 H 0.272 0.728
24 H -0.009 1.009
25 H -0.017 1.017
26 H 0.071 0.929
27 H 0.041 0.959
28 H 0.057 0.943
29 H 0.095 0.905
30 H 0.067 0.933
31 H 0.052 0.948
32 H 0.054 0.946
33 H 0.066 0.934
34 H 0.341 0.659
35 H 0.342 0.658
36 H 0.064 0.936
37 H 0.064 0.936
38 H 0.068 0.932
39 H 0.060 0.940
40 H 0.063 0.937
41 H 0.056 0.944
42 H 0.068 0.932
43 H 0.058 0.942
44 H 0.057 0.943
45 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.799 -21.295 5.476 25.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.193 4.193
3 Si 0.808 3.192
4 H -0.190 1.190
5 H -0.197 1.197
6 H -0.190 1.190
7 C -0.589 4.589
8 H 0.077 0.923
9 C 0.133 3.867
10 O -0.328 6.328
11 C -0.027 4.027
12 C -0.002 4.002
13 O -0.331 6.331
14 C -0.019 4.019
15 C -0.185 4.185
16 C 0.041 3.959
17 N -0.363 5.363
18 C -0.147 4.147
19 C -0.145 4.145
20 C -0.154 4.154
21 C -0.145 4.145
22 C -0.145 4.145
23 H 0.081 0.919
24 H 0.009 0.991
25 H 0.001 0.999
26 H 0.088 0.912
27 H 0.059 0.941
28 H 0.076 0.924
29 H 0.112 0.888
30 H 0.085 0.915
31 H 0.070 0.930
32 H 0.073 0.927
33 H 0.085 0.915
34 H 0.155 0.845
35 H 0.155 0.845
36 H 0.083 0.917
37 H 0.082 0.918
38 H 0.087 0.913
39 H 0.078 0.922
40 H 0.082 0.918
41 H 0.075 0.925
42 H 0.087 0.913
43 H 0.077 0.923
44 H 0.075 0.925
45 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 14.186 -21.676 5.921 26.573
hybrid contribution -1.057 1.623 -0.457 1.990
sum 13.128 -20.053 5.464 24.583
Atomic orbital electron populations
1.70066 1.07750 1.28763 1.50349 1.25995 0.96028 1.03458 0.93780
0.85155 0.78288 0.76815 0.78984 1.18990 1.19708 1.19033 1.21379
0.94029 0.90940 1.52520 0.92254 1.19847 0.88633 0.84719 0.93515
1.87859 1.35421 1.14312 1.95221 1.22670 0.95558 0.83963 1.00522
1.22568 0.93328 0.97415 0.86870 1.87985 1.48605 1.57549 1.38944
1.22693 0.89331 0.91757 0.98083 1.22353 0.98960 1.00394 0.96778
1.20645 0.89194 0.93570 0.92531 1.58988 1.33004 1.39267 1.05048
1.21633 0.97850 0.93268 1.01906 1.21388 0.97506 0.97535 0.98109
1.21505 0.99641 0.96820 0.97428 1.21374 0.97423 0.94202 1.01469
1.21557 0.98118 0.99434 0.95385 0.91925 0.99135 0.99918 0.91151
0.94051 0.92425 0.88764 0.91482 0.93023 0.92711 0.91498 0.84458
0.84453 0.91714 0.91773 0.91324 0.92161 0.91799 0.92489 0.91338
0.92302 0.92465 0.91707
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16
2 C 0.01 0.35 5.46 84.65 0.46 0.81 16
3 Si 0.99 45.23 29.54 68.60 2.03 47.25 16
4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16
5 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16
6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
7 C -0.55 -34.06 9.43 25.60 0.24 -33.82 16
8 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16
9 C 0.21 12.19 5.69 71.23 0.41 12.60 16
10 O -0.41 -21.23 10.29 -144.35 -1.49 -22.72 16
11 C 0.05 1.93 6.32 71.98 0.45 2.39 16
12 C 0.07 2.25 6.32 71.98 0.45 2.71 16
13 O -0.41 -13.85 10.31 -144.35 -1.49 -15.33 16
14 C 0.06 1.35 5.25 71.98 0.38 1.73 16
15 C -0.15 -3.21 4.82 30.59 0.15 -3.06 16
16 C 0.13 2.25 0.58 3.53 0.00 2.25 16
17 N -0.83 -13.00 7.28 -151.57 -1.10 -14.11 16
18 C -0.11 -1.67 4.53 30.59 0.14 -1.53 16
19 C -0.11 -1.52 5.77 30.60 0.18 -1.34 16
20 C -0.12 -1.58 5.92 30.60 0.18 -1.40 16
21 C -0.11 -1.58 5.77 30.59 0.18 -1.40 16
22 C -0.11 -1.76 4.85 30.60 0.15 -1.61 16
23 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16
24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16
25 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16
26 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16
27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16
28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
29 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16
30 H 0.07 1.30 6.43 -2.39 -0.02 1.28 16
31 H 0.05 1.10 6.66 -2.39 -0.02 1.09 16
32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16
33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
34 H 0.34 5.08 7.16 -89.69 -0.64 4.44 16
35 H 0.34 5.35 8.98 -89.70 -0.81 4.55 16
36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
37 H 0.06 0.95 6.43 -2.39 -0.02 0.93 16
38 H 0.07 1.07 7.60 -2.39 -0.02 1.05 16
39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
42 H 0.07 1.11 7.60 -2.39 -0.02 1.09 16
43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16
44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
45 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
Total: -1.00 -69.85 351.87 1.11 -68.74
By element:
Atomic # 1 Polarization: 14.99 SS G_CDS: -0.50 Total: 14.50 kcal
Atomic # 6 Polarization: -25.07 SS G_CDS: 3.37 Total: -21.70 kcal
Atomic # 7 Polarization: -69.92 SS G_CDS: -0.82 Total: -70.74 kcal
Atomic # 8 Polarization: -35.08 SS G_CDS: -2.97 Total: -38.05 kcal
Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal
Total: -69.85 1.11 -68.74 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000686911524.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -78.304 kcal
(2) G-P(sol) polarization free energy of solvation -69.847 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.151 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.741 kcal
(6) G-S(sol) free energy of system = (1) + (5) -147.045 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds