Wall clock time and date at job start Mon Mar 30 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46905 * 2 1 4 4 C 1.53005 * 109.47273 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.56185 * 52.32264 * 4 3 2 6 6 C 1.54479 * 110.50902 * 289.64529 * 4 3 2 7 7 O 1.44432 * 104.80308 * 217.37298 * 6 4 3 8 8 C 1.44426 * 105.26956 * 40.51054 * 7 6 4 9 9 C 1.54478 * 104.80637 * 319.48945 * 8 7 6 10 10 H 1.09005 * 110.50785 * 142.76153 * 9 8 7 11 11 N 1.46897 * 110.50786 * 265.33210 * 9 8 7 12 12 C 1.46901 * 110.99985 * 57.50785 * 11 9 8 13 13 C 1.46903 * 111.00544 * 293.54572 * 11 9 8 14 14 C 1.52996 * 109.47380 * 190.00296 * 13 11 9 15 15 O 1.42903 * 109.46972 * 64.99939 * 14 13 11 16 16 C 1.42905 * 113.99594 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46835 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99770 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00083 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 300.00001 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00094 * 21 19 17 25 25 H 1.08991 * 109.47083 * 59.99828 * 1 2 3 26 26 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47243 * 299.99441 * 1 2 3 28 28 H 1.08998 * 109.46808 * 239.99921 * 2 1 3 29 29 H 1.09000 * 109.47080 * 119.99880 * 2 1 3 30 30 H 1.09010 * 109.47045 * 60.00380 * 3 2 1 31 31 H 1.08997 * 109.47776 * 300.00225 * 3 2 1 32 32 H 1.09001 * 110.37248 * 98.54182 * 6 4 3 33 33 H 1.08997 * 110.37542 * 336.20242 * 6 4 3 34 34 H 1.09003 * 110.36632 * 200.65322 * 8 7 6 35 35 H 1.09004 * 110.37123 * 78.32204 * 8 7 6 36 36 H 1.09001 * 109.46740 * 296.03812 * 12 11 9 37 37 H 1.08994 * 109.47286 * 56.03855 * 12 11 9 38 38 H 1.09001 * 109.47317 * 176.04397 * 12 11 9 39 39 H 1.09000 * 109.46683 * 70.00177 * 13 11 9 40 40 H 1.08994 * 109.46833 * 310.00770 * 13 11 9 41 41 H 1.09005 * 109.47032 * 305.00418 * 14 13 11 42 42 H 1.08995 * 109.47071 * 184.99975 * 14 13 11 43 43 H 1.08994 * 109.47298 * 60.00506 * 16 15 14 44 44 H 1.08998 * 109.47434 * 300.00112 * 16 15 14 45 45 H 0.97005 * 119.99661 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9532 0.8187 -0.8068 6 6 4.1107 0.9564 1.3636 7 8 5.2792 1.7693 1.6083 8 6 4.9152 3.0984 1.1762 9 6 4.1114 2.8841 -0.1254 10 1 3.2905 3.5984 -0.1893 11 7 4.9886 3.0039 -1.2976 12 6 6.0984 2.0442 -1.2249 13 6 5.4890 4.3775 -1.4427 14 6 6.1876 4.5255 -2.7958 15 8 5.2326 4.3582 -3.8457 16 6 5.7849 4.4788 -5.1582 17 6 4.6952 4.2863 -6.1812 18 1 3.6822 4.0918 -5.8610 19 6 4.9913 4.3585 -7.5258 20 7 6.2249 4.5949 -7.9157 21 14 3.6405 4.1206 -8.7939 22 1 4.2143 4.2458 -10.1578 23 1 3.0403 2.7721 -8.6307 24 1 2.5929 5.1553 -8.6013 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 4.3859 -0.0969 1.3088 33 1 3.3677 1.1151 2.1451 34 1 5.8084 3.6907 0.9776 35 1 4.2955 3.5857 1.9290 36 1 6.7267 2.2798 -0.3659 37 1 5.6999 1.0354 -1.1177 38 1 6.6921 2.1054 -2.1369 39 1 6.1974 4.5924 -0.6426 40 1 4.6543 5.0760 -1.3863 41 1 6.9655 3.7675 -2.8880 42 1 6.6357 5.5166 -2.8668 43 1 6.5546 3.7202 -5.2997 44 1 6.2243 5.4690 -5.2780 45 1 6.9263 4.7188 -7.2572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688240321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:06 Heat of formation + Delta-G solvation = -102.997403 kcal Electronic energy + Delta-G solvation = -21801.319280 eV Core-core repulsion = 18625.526341 eV Total energy + Delta-G solvation = -3175.792939 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42046 -37.32548 -35.73865 -35.52393 -32.93647 -31.47949 -29.43540 -28.60065 -26.41542 -26.08004 -25.17812 -23.23943 -22.43989 -21.57802 -20.51113 -19.73509 -17.04021 -16.79928 -16.26781 -15.90296 -15.63492 -15.58232 -14.78524 -14.36781 -14.08087 -13.96967 -13.68466 -13.42666 -13.06530 -12.90917 -12.73718 -12.29774 -12.17976 -11.85550 -11.69661 -11.66405 -11.50746 -11.25087 -11.23737 -10.98895 -10.74963 -10.68501 -10.63796 -10.60044 -10.09147 -10.03421 -9.97566 -8.77915 -8.58428 -8.18463 -8.03975 -6.42054 -4.09750 3.45603 3.48661 3.67356 3.78019 3.92078 4.38484 4.47159 4.64567 4.67642 4.76400 4.90059 4.94731 5.03795 5.11429 5.12478 5.33079 5.35871 5.39691 5.43282 5.46882 5.51533 5.55169 5.60725 5.67200 5.72139 5.74779 5.84085 5.88201 5.93187 5.99138 6.04129 6.13920 6.16342 6.19425 6.29973 6.57331 6.81169 7.18006 7.18559 7.23092 7.96679 8.24541 8.70536 8.87315 9.60809 10.98254 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.004192 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.293621 B = 6677.660281 C = 7954.219240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.108 4.108 4 C -0.117 4.117 5 H 0.098 0.902 6 C 0.048 3.952 7 O -0.374 6.374 8 C 0.011 3.989 9 C 0.057 3.943 10 H 0.097 0.903 11 N -0.513 5.513 12 C 0.021 3.979 13 C 0.059 3.941 14 C 0.064 3.936 15 O -0.371 6.371 16 C 0.185 3.815 17 C -0.592 4.592 18 H 0.060 0.940 19 C 0.016 3.984 20 N -0.913 5.913 21 Si 1.079 2.921 22 H -0.282 1.282 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.039 0.961 43 H -0.007 1.007 44 H -0.008 1.008 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.742 -6.404 20.285 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.146 4.146 4 C -0.136 4.136 5 H 0.116 0.884 6 C -0.029 4.029 7 O -0.292 6.292 8 C -0.068 4.068 9 C -0.052 4.052 10 H 0.115 0.885 11 N -0.236 5.236 12 C -0.127 4.127 13 C -0.069 4.069 14 C -0.014 4.014 15 O -0.290 6.290 16 C 0.111 3.889 17 C -0.630 4.630 18 H 0.078 0.922 19 C -0.187 4.187 20 N -0.550 5.550 21 Si 0.906 3.094 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.213 1.213 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.010 0.990 44 H 0.009 0.991 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.308 -6.652 18.337 20.501 hybrid contribution 1.031 0.424 2.306 2.561 sum -5.277 -6.229 20.643 22.198 Atomic orbital electron populations 1.21771 0.95876 1.01496 1.01873 1.21545 0.95889 0.96793 1.02011 1.21629 0.93321 0.97117 1.02551 1.22689 0.96264 0.96223 0.98405 0.88417 1.23560 0.87828 0.96014 0.95483 1.89120 1.35377 1.19538 1.85212 1.24151 1.00362 0.85929 0.96369 1.23216 0.96146 0.97584 0.88301 0.88452 1.62098 1.19455 1.04937 1.37103 1.22453 0.93081 0.96509 1.00631 1.22171 0.99137 0.89966 0.95596 1.22297 0.92247 0.98447 0.88410 1.87979 1.33567 1.92811 1.14630 1.20258 0.95309 0.93780 0.79588 1.21897 0.96082 1.53161 0.91852 0.92153 1.25920 1.00958 0.93916 0.97897 1.70802 1.00928 1.45373 1.37865 0.83413 0.73995 0.76657 0.75363 1.20689 1.21217 1.21252 0.92482 0.92894 0.92954 0.91686 0.92297 0.92103 0.90793 0.89302 0.92333 0.89265 0.92207 0.95263 0.91397 0.91203 0.94164 0.90097 0.94442 0.94339 0.98960 0.99079 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.07 5.81 -26.73 -0.16 -1.22 16 3 C -0.11 -1.03 4.43 -26.73 -0.12 -1.15 16 4 C -0.12 -1.26 2.22 -89.05 -0.20 -1.46 16 5 H 0.10 1.21 6.28 -51.93 -0.33 0.88 16 6 C 0.05 0.47 6.51 37.93 0.25 0.72 16 7 O -0.37 -4.57 10.68 -35.23 -0.38 -4.95 16 8 C 0.01 0.12 6.24 37.93 0.24 0.35 16 9 C 0.06 0.69 2.90 -66.15 -0.19 0.50 16 10 H 0.10 1.16 7.69 -51.93 -0.40 0.76 16 11 N -0.51 -7.76 4.72 -233.01 -1.10 -8.86 16 12 C 0.02 0.30 8.20 60.06 0.49 0.79 16 13 C 0.06 0.89 4.95 -3.82 -0.02 0.87 16 14 C 0.06 1.21 5.99 37.16 0.22 1.43 16 15 O -0.37 -9.24 10.27 -35.23 -0.36 -9.61 16 16 C 0.19 5.20 5.00 36.01 0.18 5.38 16 17 C -0.59 -18.02 9.43 -34.44 -0.32 -18.35 16 18 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 19 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 20 N -0.91 -28.49 13.65 55.43 0.76 -27.73 16 21 Si 1.08 25.91 29.90 -169.99 -5.08 20.82 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.45 7.63 -51.93 -0.40 0.05 16 30 H 0.06 0.52 7.96 -51.92 -0.41 0.10 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.51 7.74 -51.93 -0.40 0.10 16 34 H 0.09 1.00 5.82 -51.93 -0.30 0.70 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.03 0.39 6.60 -51.93 -0.34 0.05 16 37 H 0.07 0.92 6.08 -51.93 -0.32 0.61 16 38 H 0.07 1.10 6.37 -51.93 -0.33 0.76 16 39 H 0.04 0.51 6.64 -51.93 -0.34 0.17 16 40 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 41 H 0.04 0.70 6.34 -51.93 -0.33 0.37 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H -0.01 -0.21 8.01 -51.93 -0.42 -0.62 16 44 H -0.01 -0.24 8.01 -51.93 -0.42 -0.66 16 45 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -33.11 346.99 -8.33 -41.44 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -8.03 Total: -3.73 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 0.64 Total: -12.61 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.34 Total: -36.60 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.74 Total: -14.55 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.11 -8.33 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688240321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.556 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds