Wall clock time and date at job start Mon Mar 30 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46905 * 2 1 4 4 C 1.53005 * 109.47273 * 179.97438 * 3 2 1 5 5 H 1.08997 * 110.56185 * 52.32264 * 4 3 2 6 6 C 1.54479 * 110.50902 * 289.64529 * 4 3 2 7 7 O 1.44432 * 104.80308 * 217.37298 * 6 4 3 8 8 C 1.44426 * 105.26956 * 40.51054 * 7 6 4 9 9 C 1.54478 * 104.80637 * 319.48945 * 8 7 6 10 10 H 1.09005 * 110.50785 * 142.76153 * 9 8 7 11 11 N 1.46897 * 110.50786 * 265.33210 * 9 8 7 12 12 C 1.46901 * 110.99985 * 57.50785 * 11 9 8 13 13 C 1.46903 * 111.00544 * 293.54572 * 11 9 8 14 14 C 1.52996 * 109.47380 * 190.00296 * 13 11 9 15 15 O 1.42903 * 109.46972 * 64.99939 * 14 13 11 16 16 C 1.42905 * 113.99594 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46835 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99770 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00083 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 300.00001 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00094 * 21 19 17 25 25 H 1.08991 * 109.47083 * 59.99828 * 1 2 3 26 26 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47243 * 299.99441 * 1 2 3 28 28 H 1.08998 * 109.46808 * 239.99921 * 2 1 3 29 29 H 1.09000 * 109.47080 * 119.99880 * 2 1 3 30 30 H 1.09010 * 109.47045 * 60.00380 * 3 2 1 31 31 H 1.08997 * 109.47776 * 300.00225 * 3 2 1 32 32 H 1.09001 * 110.37248 * 98.54182 * 6 4 3 33 33 H 1.08997 * 110.37542 * 336.20242 * 6 4 3 34 34 H 1.09003 * 110.36632 * 200.65322 * 8 7 6 35 35 H 1.09004 * 110.37123 * 78.32204 * 8 7 6 36 36 H 1.09001 * 109.46740 * 296.03812 * 12 11 9 37 37 H 1.08994 * 109.47286 * 56.03855 * 12 11 9 38 38 H 1.09001 * 109.47317 * 176.04397 * 12 11 9 39 39 H 1.09000 * 109.46683 * 70.00177 * 13 11 9 40 40 H 1.08994 * 109.46833 * 310.00770 * 13 11 9 41 41 H 1.09005 * 109.47032 * 305.00418 * 14 13 11 42 42 H 1.08995 * 109.47071 * 184.99975 * 14 13 11 43 43 H 1.08994 * 109.47298 * 60.00506 * 16 15 14 44 44 H 1.08998 * 109.47434 * 300.00112 * 16 15 14 45 45 H 0.97005 * 119.99661 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9532 0.8187 -0.8068 6 6 4.1107 0.9564 1.3636 7 8 5.2792 1.7693 1.6083 8 6 4.9152 3.0984 1.1762 9 6 4.1114 2.8841 -0.1254 10 1 3.2905 3.5984 -0.1893 11 7 4.9886 3.0039 -1.2976 12 6 6.0984 2.0442 -1.2249 13 6 5.4890 4.3775 -1.4427 14 6 6.1876 4.5255 -2.7958 15 8 5.2326 4.3582 -3.8457 16 6 5.7849 4.4788 -5.1582 17 6 4.6952 4.2863 -6.1812 18 1 3.6822 4.0918 -5.8610 19 6 4.9913 4.3585 -7.5258 20 7 6.2249 4.5949 -7.9157 21 14 3.6405 4.1206 -8.7939 22 1 4.2143 4.2458 -10.1578 23 1 3.0403 2.7721 -8.6307 24 1 2.5929 5.1553 -8.6013 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 4.3859 -0.0969 1.3088 33 1 3.3677 1.1151 2.1451 34 1 5.8084 3.6907 0.9776 35 1 4.2955 3.5857 1.9290 36 1 6.7267 2.2798 -0.3659 37 1 5.6999 1.0354 -1.1177 38 1 6.6921 2.1054 -2.1369 39 1 6.1974 4.5924 -0.6426 40 1 4.6543 5.0760 -1.3863 41 1 6.9655 3.7675 -2.8880 42 1 6.6357 5.5166 -2.8668 43 1 6.5546 3.7202 -5.2997 44 1 6.2243 5.4690 -5.2780 45 1 6.9263 4.7188 -7.2572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688240321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:05 Heat of formation + Delta-G solvation = -125.670973 kcal Electronic energy + Delta-G solvation = -21802.302480 eV Core-core repulsion = 18625.526341 eV Total energy + Delta-G solvation = -3176.776139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35336 -38.95129 -37.14460 -36.29164 -35.16704 -32.41999 -30.69376 -29.67651 -28.47733 -26.90036 -26.35138 -24.74926 -24.15401 -22.56317 -21.46981 -20.73404 -19.18925 -17.91355 -17.58124 -17.11244 -16.89077 -16.63507 -15.86655 -15.74243 -15.52831 -15.37891 -15.25631 -14.50095 -14.31984 -13.99438 -13.90345 -13.53414 -13.50743 -13.21634 -13.12502 -12.76277 -12.68198 -12.51975 -12.49442 -12.23632 -12.03837 -11.90787 -11.83782 -11.60960 -11.40880 -11.33916 -10.86037 -10.84306 -10.80207 -10.31748 -9.14764 -8.83243 -6.53665 1.52534 1.61815 1.83051 2.50023 2.79967 2.98086 3.03852 3.08622 3.51476 3.78597 3.88492 4.05330 4.09877 4.13037 4.20350 4.25927 4.28353 4.36064 4.39252 4.43377 4.46350 4.54276 4.57732 4.67709 4.70759 4.78066 4.81275 4.82524 4.91571 4.95578 4.96943 4.99591 5.09263 5.20039 5.30310 5.41674 5.48485 5.68624 5.72827 5.92148 6.07302 6.15548 6.33987 6.70875 7.27441 8.57861 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017139 B = 0.004192 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.293621 B = 6677.660281 C = 7954.219240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.103 4.103 4 C -0.113 4.113 5 H 0.077 0.923 6 C 0.051 3.949 7 O -0.392 6.392 8 C 0.016 3.984 9 C 0.055 3.945 10 H 0.099 0.901 11 N -0.540 5.540 12 C 0.030 3.970 13 C 0.068 3.932 14 C 0.054 3.946 15 O -0.388 6.388 16 C 0.197 3.803 17 C -0.620 4.620 18 H 0.052 0.948 19 C -0.029 4.029 20 N -0.929 5.929 21 Si 1.128 2.872 22 H -0.275 1.275 23 H -0.268 1.268 24 H -0.266 1.266 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.049 0.951 43 H -0.023 1.023 44 H -0.020 1.020 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 -6.707 21.669 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.140 4.140 4 C -0.132 4.132 5 H 0.095 0.905 6 C -0.025 4.025 7 O -0.311 6.311 8 C -0.062 4.062 9 C -0.054 4.054 10 H 0.117 0.883 11 N -0.263 5.263 12 C -0.118 4.118 13 C -0.060 4.060 14 C -0.023 4.023 15 O -0.307 6.307 16 C 0.121 3.879 17 C -0.658 4.658 18 H 0.070 0.930 19 C -0.226 4.226 20 N -0.566 5.566 21 Si 0.946 3.054 22 H -0.200 1.200 23 H -0.193 1.193 24 H -0.191 1.191 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.067 0.933 43 H -0.006 1.006 44 H -0.002 1.002 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.605 -6.955 19.767 22.292 hybrid contribution 1.485 0.512 1.966 2.516 sum -6.120 -6.443 21.733 23.480 Atomic orbital electron populations 1.21768 0.95358 1.01986 1.01860 1.21529 0.96323 0.96086 1.02113 1.21575 0.92384 0.97758 1.02322 1.22635 0.96993 0.95093 0.98510 0.90451 1.23650 0.87580 0.96185 0.95100 1.89103 1.36584 1.20177 1.85280 1.24131 1.00314 0.85740 0.96044 1.23283 0.95767 0.98494 0.87868 0.88253 1.62036 1.20046 1.04833 1.39425 1.22329 0.92898 0.96721 0.99843 1.22086 0.99670 0.90391 0.93835 1.22660 0.92040 0.99030 0.88557 1.87927 1.35457 1.92940 1.14366 1.19921 0.94278 0.92435 0.81236 1.22248 0.96281 1.54031 0.93216 0.92967 1.27612 1.02392 0.92282 1.00302 1.70930 1.01537 1.46556 1.37571 0.82832 0.71630 0.78054 0.72849 1.20024 1.19313 1.19096 0.93498 0.92189 0.91967 0.92955 0.90833 0.90486 0.92799 0.88431 0.90453 0.89486 0.90166 0.94263 0.91040 0.93370 0.91029 0.89893 0.94418 0.93320 1.00577 1.00228 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.49 16 2 C -0.12 -1.93 5.81 30.59 0.18 -1.76 16 3 C -0.10 -1.82 4.43 30.59 0.14 -1.68 16 4 C -0.11 -2.30 2.22 -9.78 -0.02 -2.32 16 5 H 0.08 1.90 6.28 -2.39 -0.02 1.88 16 6 C 0.05 0.89 6.51 72.48 0.47 1.36 16 7 O -0.39 -8.70 10.68 -148.98 -1.59 -10.29 16 8 C 0.02 0.32 6.24 72.48 0.45 0.77 16 9 C 0.05 1.25 2.90 45.93 0.13 1.38 16 10 H 0.10 2.21 7.69 -2.38 -0.02 2.20 16 11 N -0.54 -16.04 4.72 -891.10 -4.21 -20.25 16 12 C 0.03 0.85 8.20 127.69 1.05 1.90 16 13 C 0.07 1.98 4.95 86.30 0.43 2.41 16 14 C 0.05 2.07 5.99 71.98 0.43 2.50 16 15 O -0.39 -19.72 10.27 -148.98 -1.53 -21.25 16 16 C 0.20 11.36 5.00 71.24 0.36 11.72 16 17 C -0.62 -38.41 9.43 25.60 0.24 -38.17 16 18 H 0.05 3.24 7.81 -2.91 -0.02 3.22 16 19 C -0.03 -1.72 5.46 84.65 0.46 -1.25 16 20 N -0.93 -58.59 13.65 21.45 0.29 -58.30 16 21 Si 1.13 51.33 29.90 68.60 2.05 53.38 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.95 7.63 -2.39 -0.02 0.93 16 30 H 0.08 1.12 7.96 -2.38 -0.02 1.10 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.07 7.74 -2.39 -0.02 1.06 16 34 H 0.09 1.74 5.82 -2.39 -0.01 1.73 16 35 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.04 1.01 6.60 -2.39 -0.02 1.00 16 37 H 0.07 1.94 6.08 -2.39 -0.01 1.93 16 38 H 0.05 1.55 6.37 -2.39 -0.02 1.53 16 39 H 0.07 1.67 6.64 -2.39 -0.02 1.65 16 40 H 0.08 2.39 8.04 -2.39 -0.02 2.37 16 41 H 0.04 1.43 6.34 -2.38 -0.02 1.41 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H -0.02 -1.40 8.01 -2.39 -0.02 -1.41 16 44 H -0.02 -1.17 8.01 -2.39 -0.02 -1.19 16 45 H 0.25 16.23 7.22 -92.70 -0.67 15.56 16 Total: -1.00 -71.31 346.99 1.08 -70.23 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 1.04 Total: 11.12 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 5.03 Total: -24.65 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -3.92 Total: -78.54 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -3.12 Total: -31.54 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Total: -71.31 1.08 -70.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688240321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.437 kcal (2) G-P(sol) polarization free energy of solvation -71.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds