Wall clock time and date at job start Mon Mar 30 2020 04:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00170 * 2 1 4 4 H 1.09002 * 110.62688 * 328.33954 * 3 2 1 5 5 C 1.54319 * 110.70875 * 91.45085 * 3 2 1 6 6 N 1.47445 * 107.23272 * 140.84130 * 5 3 2 7 7 C 1.46896 * 110.99888 * 123.25751 * 6 5 3 8 8 C 1.52997 * 109.47114 * 69.87222 * 7 6 5 9 9 C 1.53006 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47127 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47055 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00290 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00258 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00465 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99610 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46964 * 90.00693 * 15 13 11 17 17 H 1.48502 * 109.47035 * 210.00526 * 15 13 11 18 18 H 1.48499 * 109.47257 * 330.00601 * 15 13 11 19 19 C 1.47849 * 108.56754 * 0.98847 * 6 5 3 20 20 C 1.54908 * 104.79586 * 335.90604 * 19 6 5 21 21 H 1.09003 * 110.99080 * 278.97909 * 20 19 6 22 22 C 1.50703 * 111.02333 * 155.17541 * 20 19 6 23 23 O 1.20826 * 120.00055 * 247.71467 * 22 20 19 24 24 O 1.34228 * 119.99677 * 67.71338 * 22 20 19 25 25 H 1.09003 * 109.47284 * 300.00612 * 1 2 3 26 26 H 1.09001 * 109.46928 * 60.00138 * 1 2 3 27 27 H 1.08997 * 109.47508 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.88582 * 21.43273 * 5 3 2 29 29 H 1.09000 * 109.88363 * 260.24424 * 5 3 2 30 30 H 1.09001 * 109.47267 * 309.86934 * 7 6 5 31 31 H 1.09004 * 109.47041 * 189.87338 * 7 6 5 32 32 H 1.09001 * 109.46832 * 59.99999 * 8 7 6 33 33 H 1.08993 * 109.47194 * 299.99521 * 8 7 6 34 34 H 1.09001 * 109.46801 * 300.00272 * 9 8 7 35 35 H 1.09001 * 109.46998 * 59.99868 * 9 8 7 36 36 H 1.08996 * 109.46952 * 300.00302 * 10 9 8 37 37 H 1.09001 * 109.46832 * 60.00321 * 10 9 8 38 38 H 0.96999 * 120.00061 * 179.97438 * 14 13 11 39 39 H 1.09007 * 110.37144 * 94.73254 * 19 6 5 40 40 H 1.08997 * 110.37301 * 217.07670 * 19 6 5 41 41 H 0.96704 * 116.99944 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3732 2.0094 -0.5355 5 6 2.2656 1.7890 1.4430 6 7 3.5565 2.5014 1.4429 7 6 3.4010 3.8728 1.9458 8 6 3.1013 3.8352 3.4456 9 6 2.9400 5.2637 3.9695 10 6 2.6409 5.2261 5.4695 11 6 2.4814 6.6330 5.9853 12 1 2.5835 7.4703 5.3109 13 6 2.2060 6.8515 7.3185 14 7 2.0663 8.0792 7.7687 15 14 2.0301 5.4032 8.4853 16 1 3.3552 5.0740 9.0690 17 1 1.0838 5.7567 9.5738 18 1 1.5113 4.2278 7.7407 19 6 4.0951 2.4998 0.0660 20 6 3.4339 1.2761 -0.6159 21 1 3.9538 0.3546 -0.3536 22 6 3.3789 1.4547 -2.1113 23 8 2.3138 1.5951 -2.6642 24 8 4.5133 1.4578 -2.8289 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.3138 0.9342 2.1175 29 1 1.4690 2.4651 1.7539 30 1 2.5782 4.3604 1.4229 31 1 4.3220 4.4298 1.7731 32 1 3.9242 3.3476 3.9684 33 1 2.1804 3.2784 3.6183 34 1 3.8612 5.8202 3.7968 35 1 2.1173 5.7516 3.4467 36 1 1.7199 4.6694 5.6425 37 1 3.4639 4.7383 5.9919 38 1 1.8722 8.2328 8.7065 39 1 3.8175 3.4183 -0.4511 40 1 5.1789 2.3853 0.0826 41 1 4.4277 1.5752 -3.7849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690159637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:00 Heat of formation + Delta-G solvation = -144.383447 kcal Electronic energy + Delta-G solvation = -20917.192381 eV Core-core repulsion = 17603.771714 eV Total energy + Delta-G solvation = -3313.420667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03545 -39.31199 -37.35425 -36.47678 -34.96147 -32.81554 -31.42684 -29.25418 -28.55387 -26.69827 -25.03385 -23.58658 -22.14955 -21.12642 -20.27731 -19.94965 -18.53307 -17.65849 -17.04809 -16.63587 -15.98897 -15.70184 -15.44769 -15.02519 -14.75082 -14.23682 -14.14481 -13.64372 -13.42804 -13.22433 -12.65528 -12.53986 -12.33137 -12.15637 -11.95553 -11.74949 -11.74003 -11.56986 -11.17011 -11.01878 -10.93395 -10.76864 -10.51695 -10.00359 -9.87753 -9.66927 -9.49500 -9.14239 -8.51757 -8.50271 -6.02221 -3.99921 1.78338 2.52530 3.28651 3.32872 3.39961 3.44311 3.86173 3.92232 4.27144 4.47600 4.62357 4.83523 4.88366 4.99297 5.11151 5.16350 5.17153 5.24958 5.32022 5.36176 5.43348 5.48311 5.57838 5.75519 5.76767 5.98503 6.04673 6.08051 6.34634 6.62029 6.73905 6.75547 6.81835 6.84617 7.01969 7.35053 7.47978 7.48326 7.82876 8.56802 9.02980 9.60802 11.11397 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.003214 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.119768 B = 8710.664640 C = 9264.955027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.083 3.917 4 H 0.083 0.917 5 C 0.020 3.980 6 N -0.520 5.520 7 C 0.048 3.952 8 C -0.115 4.115 9 C -0.102 4.102 10 C -0.013 4.013 11 C -0.520 4.520 12 H 0.070 0.930 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.265 1.265 19 C 0.058 3.942 20 C -0.092 4.092 21 H 0.133 0.867 22 C 0.493 3.507 23 O -0.512 6.512 24 O -0.512 6.512 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.014 0.986 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 -16.470 -20.371 26.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.024 3.976 4 H 0.101 0.899 5 C -0.109 4.109 6 N -0.245 5.245 7 C -0.079 4.079 8 C -0.153 4.153 9 C -0.140 4.140 10 C -0.051 4.051 11 C -0.558 4.558 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.070 4.070 20 C -0.112 4.112 21 H 0.151 0.849 22 C 0.335 3.665 23 O -0.400 6.400 24 O -0.323 6.323 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 2.209 -16.794 -19.602 25.907 hybrid contribution -0.977 0.084 -0.474 1.089 sum 1.233 -16.710 -20.076 26.149 Atomic orbital electron populations 1.22826 0.80303 1.02983 1.00453 1.87870 1.20352 1.26185 1.94880 1.23263 0.92469 0.86184 0.95682 0.89892 1.23444 0.91397 0.99976 0.96035 1.63689 1.24095 1.17147 1.19569 1.22488 1.00939 0.87282 0.97191 1.21687 1.01632 0.99137 0.92873 1.21433 1.00780 0.93472 0.98326 1.19560 0.96010 0.97668 0.91850 1.21190 1.48162 0.91797 0.94674 0.91150 1.25054 0.94742 0.95546 0.98299 1.69921 1.49632 1.19781 1.15179 0.86758 0.78239 0.83514 0.80654 1.20281 1.21472 1.18997 1.22956 1.01157 0.94468 0.88369 1.22217 0.98682 1.03551 0.86741 0.84920 1.23062 0.81208 0.71664 0.90579 1.90726 1.31215 1.45333 1.72731 1.84544 1.36823 1.84587 1.26372 0.93583 0.93665 0.89394 0.88805 0.91261 0.94534 0.90398 0.91442 0.92597 0.92782 0.93090 0.96794 0.97027 0.92794 0.92777 0.88104 0.72986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.88 101.05 1.10 1.37 16 2 O -0.38 -4.17 10.44 -35.23 -0.37 -4.54 16 3 C 0.08 0.88 2.52 -24.91 -0.06 0.82 16 4 H 0.08 0.93 7.13 -51.93 -0.37 0.56 16 5 C 0.02 0.22 5.98 -2.83 -0.02 0.20 16 6 N -0.52 -6.02 5.16 -231.25 -1.19 -7.22 16 7 C 0.05 0.62 4.54 -3.83 -0.02 0.60 16 8 C -0.12 -1.80 5.24 -26.73 -0.14 -1.94 16 9 C -0.10 -1.97 5.15 -26.73 -0.14 -2.11 16 10 C -0.01 -0.32 4.04 -27.89 -0.11 -0.44 16 11 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 12 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.91 -28.28 13.96 55.43 0.77 -27.50 16 15 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 18 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 19 C 0.06 0.55 6.14 -2.30 -0.01 0.54 16 20 C -0.09 -0.87 3.27 -89.63 -0.29 -1.17 16 21 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 22 C 0.49 4.78 7.65 36.01 0.28 5.05 16 23 O -0.51 -6.43 16.47 -18.75 -0.31 -6.74 16 24 O -0.51 -3.55 13.42 -39.25 -0.53 -4.08 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.39 8.11 -51.93 -0.42 -0.03 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 29 H 0.07 0.79 6.91 -51.93 -0.36 0.43 16 30 H 0.04 0.46 7.96 -51.93 -0.41 0.05 16 31 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.86 7.14 -51.93 -0.37 0.49 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 37 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.05 0.50 7.70 -51.93 -0.40 0.11 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.41 1.13 9.10 45.56 0.41 1.54 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -33.87 336.45 -7.14 -41.01 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -6.07 Total: -2.71 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 0.15 Total: -10.62 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.42 Total: -34.72 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.20 Total: -15.35 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.87 -7.14 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690159637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.376 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds