Wall clock time and date at job start Mon Mar 30 2020 04:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00170 * 2 1 4 4 H 1.09002 * 110.62688 * 328.33954 * 3 2 1 5 5 C 1.54319 * 110.70875 * 91.45085 * 3 2 1 6 6 N 1.47445 * 107.23272 * 140.84130 * 5 3 2 7 7 C 1.46896 * 110.99888 * 123.25751 * 6 5 3 8 8 C 1.52997 * 109.47114 * 69.87222 * 7 6 5 9 9 C 1.53006 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47127 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47055 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00290 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00258 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00465 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99610 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46964 * 90.00693 * 15 13 11 17 17 H 1.48502 * 109.47035 * 210.00526 * 15 13 11 18 18 H 1.48499 * 109.47257 * 330.00601 * 15 13 11 19 19 C 1.47849 * 108.56754 * 0.98847 * 6 5 3 20 20 C 1.54908 * 104.79586 * 335.90604 * 19 6 5 21 21 H 1.09003 * 110.99080 * 278.97909 * 20 19 6 22 22 C 1.50703 * 111.02333 * 155.17541 * 20 19 6 23 23 O 1.20826 * 120.00055 * 247.71467 * 22 20 19 24 24 O 1.34228 * 119.99677 * 67.71338 * 22 20 19 25 25 H 1.09003 * 109.47284 * 300.00612 * 1 2 3 26 26 H 1.09001 * 109.46928 * 60.00138 * 1 2 3 27 27 H 1.08997 * 109.47508 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.88582 * 21.43273 * 5 3 2 29 29 H 1.09000 * 109.88363 * 260.24424 * 5 3 2 30 30 H 1.09001 * 109.47267 * 309.86934 * 7 6 5 31 31 H 1.09004 * 109.47041 * 189.87338 * 7 6 5 32 32 H 1.09001 * 109.46832 * 59.99999 * 8 7 6 33 33 H 1.08993 * 109.47194 * 299.99521 * 8 7 6 34 34 H 1.09001 * 109.46801 * 300.00272 * 9 8 7 35 35 H 1.09001 * 109.46998 * 59.99868 * 9 8 7 36 36 H 1.08996 * 109.46952 * 300.00302 * 10 9 8 37 37 H 1.09001 * 109.46832 * 60.00321 * 10 9 8 38 38 H 0.96999 * 120.00061 * 179.97438 * 14 13 11 39 39 H 1.09007 * 110.37144 * 94.73254 * 19 6 5 40 40 H 1.08997 * 110.37301 * 217.07670 * 19 6 5 41 41 H 0.96704 * 116.99944 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3732 2.0094 -0.5355 5 6 2.2656 1.7890 1.4430 6 7 3.5565 2.5014 1.4429 7 6 3.4010 3.8728 1.9458 8 6 3.1013 3.8352 3.4456 9 6 2.9400 5.2637 3.9695 10 6 2.6409 5.2261 5.4695 11 6 2.4814 6.6330 5.9853 12 1 2.5835 7.4703 5.3109 13 6 2.2060 6.8515 7.3185 14 7 2.0663 8.0792 7.7687 15 14 2.0301 5.4032 8.4853 16 1 3.3552 5.0740 9.0690 17 1 1.0838 5.7567 9.5738 18 1 1.5113 4.2278 7.7407 19 6 4.0951 2.4998 0.0660 20 6 3.4339 1.2761 -0.6159 21 1 3.9538 0.3546 -0.3536 22 6 3.3789 1.4547 -2.1113 23 8 2.3138 1.5951 -2.6642 24 8 4.5133 1.4578 -2.8289 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.3138 0.9342 2.1175 29 1 1.4690 2.4651 1.7539 30 1 2.5782 4.3604 1.4229 31 1 4.3220 4.4298 1.7731 32 1 3.9242 3.3476 3.9684 33 1 2.1804 3.2784 3.6183 34 1 3.8612 5.8202 3.7968 35 1 2.1173 5.7516 3.4467 36 1 1.7199 4.6694 5.6425 37 1 3.4639 4.7383 5.9919 38 1 1.8722 8.2328 8.7065 39 1 3.8175 3.4183 -0.4511 40 1 5.1789 2.3853 0.0826 41 1 4.4277 1.5752 -3.7849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690159637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:00 Heat of formation + Delta-G solvation = -169.640184 kcal Electronic energy + Delta-G solvation = -20918.287596 eV Core-core repulsion = 17603.771714 eV Total energy + Delta-G solvation = -3314.515882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79350 -40.10925 -38.22452 -37.16348 -36.47036 -34.60885 -32.84256 -30.24880 -29.86682 -27.47706 -26.46778 -24.50174 -23.44426 -21.92793 -21.81899 -21.06257 -19.24608 -18.83548 -18.41465 -17.83358 -16.75801 -16.66534 -16.35152 -16.21884 -15.94585 -15.64104 -15.19061 -14.74915 -14.67593 -14.33397 -14.02446 -13.69705 -13.57750 -13.19123 -13.09719 -12.89982 -12.73870 -12.56897 -12.45430 -12.34637 -11.97376 -11.82391 -11.76171 -11.70152 -11.37422 -11.27949 -11.17471 -10.77439 -10.75188 -9.39166 -8.28828 -6.32807 1.05070 1.37108 1.38687 1.51193 1.88574 2.37430 2.51993 3.02471 3.06761 3.15053 3.48424 3.84946 4.06110 4.10044 4.12692 4.19406 4.35408 4.37105 4.47719 4.50280 4.53805 4.63529 4.72947 4.75535 4.80275 4.82980 4.90233 4.94524 5.15620 5.19246 5.28449 5.50624 5.59808 5.65866 5.69968 5.84973 5.95612 6.06544 6.30400 6.75850 6.89883 7.32180 8.88185 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.003214 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.119768 B = 8710.664640 C = 9264.955027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.389 6.389 3 C 0.085 3.915 4 H 0.074 0.926 5 C 0.022 3.978 6 N -0.525 5.525 7 C 0.055 3.945 8 C -0.104 4.104 9 C -0.095 4.095 10 C -0.012 4.012 11 C -0.534 4.534 12 H 0.030 0.970 13 C 0.000 4.000 14 N -0.954 5.954 15 Si 0.953 3.047 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.246 1.246 19 C 0.061 3.939 20 C -0.089 4.089 21 H 0.142 0.858 22 C 0.501 3.499 23 O -0.546 6.546 24 O -0.503 6.503 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.266 0.734 39 H 0.056 0.944 40 H 0.117 0.883 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 -18.761 -20.839 28.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.307 6.307 3 C 0.025 3.975 4 H 0.092 0.908 5 C -0.106 4.106 6 N -0.250 5.250 7 C -0.072 4.072 8 C -0.142 4.142 9 C -0.134 4.134 10 C -0.050 4.050 11 C -0.572 4.572 12 H 0.048 0.952 13 C -0.196 4.196 14 N -0.595 5.595 15 Si 0.776 3.224 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.169 1.169 19 C -0.066 4.066 20 C -0.109 4.109 21 H 0.160 0.840 22 C 0.343 3.657 23 O -0.436 6.436 24 O -0.317 6.317 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.135 0.865 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 2.863 -19.095 -20.110 27.879 hybrid contribution -1.147 0.874 -0.410 1.499 sum 1.716 -18.221 -20.521 27.496 Atomic orbital electron populations 1.22972 0.79292 1.04156 1.00583 1.87845 1.21560 1.26412 1.94920 1.23199 0.93026 0.85928 0.95299 0.90798 1.23397 0.91151 0.99712 0.96350 1.63649 1.24259 1.16121 1.21016 1.22319 1.01369 0.88294 0.95258 1.21500 1.01810 0.96097 0.94749 1.21301 1.00348 0.96205 0.95497 1.19537 0.96281 0.94397 0.94765 1.21584 1.47824 0.93319 0.94500 0.95157 1.26079 0.94328 0.98750 1.00434 1.70078 1.51074 1.22462 1.15900 0.85611 0.78796 0.79885 0.78069 1.19061 1.21028 1.16943 1.23005 1.01907 0.94574 0.87121 1.22199 0.97969 1.03943 0.86787 0.84029 1.23018 0.81156 0.70770 0.90707 1.90722 1.32495 1.47059 1.73359 1.84499 1.35344 1.83822 1.28009 0.93058 0.93924 0.87773 0.89082 0.91697 0.94449 0.89639 0.91397 0.92370 0.93123 0.93636 0.96448 0.96353 0.92531 0.92524 0.86507 0.70743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.88 113.37 1.23 1.66 16 2 O -0.39 -8.18 10.44 -148.98 -1.55 -9.74 16 3 C 0.08 1.69 2.52 31.78 0.08 1.77 16 4 H 0.07 1.61 7.13 -2.39 -0.02 1.59 16 5 C 0.02 0.46 5.98 86.65 0.52 0.98 16 6 N -0.53 -11.04 5.16 -885.53 -4.57 -15.60 16 7 C 0.06 1.31 4.54 86.30 0.39 1.70 16 8 C -0.10 -3.04 5.24 30.60 0.16 -2.88 16 9 C -0.10 -3.62 5.15 30.60 0.16 -3.46 16 10 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 11 C -0.53 -31.38 9.66 25.60 0.25 -31.13 16 12 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 13 C 0.00 0.02 5.47 84.66 0.46 0.48 16 14 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 15 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 19 C 0.06 1.02 6.14 86.77 0.53 1.55 16 20 C -0.09 -1.52 3.27 -10.15 -0.03 -1.55 16 21 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 22 C 0.50 8.82 7.65 71.24 0.54 9.37 16 23 O -0.55 -13.15 16.47 21.96 0.36 -12.79 16 24 O -0.50 -5.75 13.42 -51.40 -0.69 -6.44 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 0.71 8.11 -2.39 -0.02 0.69 16 27 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.09 1.94 8.06 -2.39 -0.02 1.92 16 29 H 0.06 1.39 6.91 -2.39 -0.02 1.37 16 30 H 0.04 0.88 7.96 -2.39 -0.02 0.87 16 31 H 0.09 1.91 8.07 -2.38 -0.02 1.89 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.68 7.14 -2.39 -0.02 1.66 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 37 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 38 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.06 0.93 7.70 -2.38 -0.02 0.91 16 40 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.43 1.32 9.10 -74.05 -0.67 0.64 16 Total: -1.00 -73.05 336.45 0.43 -72.63 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.28 Total: 7.75 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 4.42 Total: -21.97 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -4.27 Total: -76.13 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.88 Total: -28.97 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -73.05 0.43 -72.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690159637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.015 kcal (2) G-P(sol) polarization free energy of solvation -73.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds