Wall clock time and date at job start Mon Mar 30 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99788 * 2 1 4 4 C 1.53002 * 109.46735 * 283.31130 * 3 2 1 5 5 O 1.42903 * 109.47416 * 65.71000 * 4 3 2 6 6 C 1.42900 * 114.00423 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47094 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00516 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99744 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00101 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00171 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47209 * 59.99929 * 11 9 7 13 13 H 1.48491 * 109.47470 * 180.02562 * 11 9 7 14 14 H 1.48509 * 109.47196 * 300.00152 * 11 9 7 15 15 C 1.46900 * 111.00123 * 123.94493 * 2 1 3 16 16 C 1.53003 * 109.46615 * 77.88799 * 15 2 1 17 17 H 1.09001 * 110.27583 * 55.51561 * 16 15 2 18 18 C 1.54948 * 110.31129 * 177.71084 * 16 15 2 19 19 C 1.55299 * 100.94369 * 155.36048 * 18 16 15 20 20 C 1.54385 * 102.25386 * 325.86549 * 19 18 16 21 21 C 1.52999 * 109.83151 * 261.84688 * 20 19 18 22 22 C 1.52997 * 109.82809 * 140.86797 * 20 19 18 23 23 O 1.43241 * 107.58677 * 21.35998 * 20 19 18 24 24 H 1.08996 * 109.47320 * 59.77982 * 1 2 3 25 25 H 1.09000 * 109.47306 * 299.77248 * 1 2 3 26 26 H 1.08999 * 109.46626 * 179.77649 * 1 2 3 27 27 H 1.08998 * 109.46969 * 43.30719 * 3 2 1 28 28 H 1.09000 * 109.47401 * 163.31055 * 3 2 1 29 29 H 1.09000 * 109.46902 * 185.70811 * 4 3 2 30 30 H 1.08997 * 109.47195 * 305.70804 * 4 3 2 31 31 H 1.09000 * 109.46680 * 300.00352 * 6 5 4 32 32 H 1.09003 * 109.46644 * 60.00128 * 6 5 4 33 33 H 0.97000 * 120.00540 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47449 * 197.88482 * 15 2 1 35 35 H 1.08998 * 109.47730 * 317.88822 * 15 2 1 36 36 H 1.09001 * 111.12731 * 273.28129 * 18 16 15 37 37 H 1.09000 * 111.11948 * 37.44040 * 18 16 15 38 38 H 1.09001 * 110.84765 * 207.68031 * 19 18 16 39 39 H 1.08993 * 110.85143 * 84.05629 * 19 18 16 40 40 H 1.09002 * 109.46972 * 179.58800 * 21 20 19 41 41 H 1.09003 * 109.46926 * 299.58199 * 21 20 19 42 42 H 1.08992 * 109.47323 * 59.58437 * 21 20 19 43 43 H 1.08996 * 109.47441 * 300.41717 * 22 20 19 44 44 H 1.09007 * 109.46994 * 60.41902 * 22 20 19 45 45 H 1.08999 * 109.47173 * 180.41270 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.8680 1.9666 -1.4038 5 8 0.4858 2.1075 -1.7379 6 6 0.2547 2.6583 -3.0361 7 6 -1.2286 2.7609 -3.2815 8 1 -1.9252 2.4381 -2.5220 9 6 -1.6963 3.2678 -4.4754 10 7 -0.8481 3.6613 -5.4001 11 14 -3.5350 3.3942 -4.7800 12 1 -4.1477 4.2737 -3.7522 13 1 -3.7750 3.9667 -6.1289 14 1 -4.1440 2.0420 -4.7012 15 6 1.9955 -0.7658 1.1377 16 6 1.8956 -2.2623 0.8350 17 1 2.4069 -2.4935 -0.0995 18 6 2.4989 -3.0879 1.9991 19 6 1.7480 -4.4360 1.8245 20 6 0.3636 -3.9768 1.3186 21 6 -0.6266 -3.9329 2.4841 22 6 -0.1412 -4.9399 0.2423 23 8 0.5188 -2.6657 0.7631 24 1 -0.3634 0.5172 -0.8880 25 1 -0.3634 0.5103 0.8920 26 1 -0.3632 -1.0277 -0.0040 27 1 1.4274 1.9786 0.7049 28 1 3.0446 1.3580 0.2951 29 1 2.3494 2.9442 -1.4290 30 1 2.3503 1.3055 -2.1238 31 1 0.7026 3.6503 -3.0947 32 1 0.7036 2.0118 -3.7902 33 1 -1.1771 4.0176 -6.2401 34 1 3.0387 -0.4977 1.3046 35 1 1.4140 -0.5362 2.0306 36 1 3.5738 -3.2177 1.8729 37 1 2.2705 -2.6329 2.9629 38 1 1.6593 -4.9569 2.7779 39 1 2.2435 -5.0629 1.0833 40 1 -1.5997 -3.6011 2.1218 41 1 -0.7208 -4.9282 2.9185 42 1 -0.2650 -3.2383 3.2421 43 1 0.5644 -4.9589 -0.5883 44 1 -0.2327 -5.9408 0.6643 45 1 -1.1152 -4.6064 -0.1159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691867288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:14 Heat of formation + Delta-G solvation = -100.014652 kcal Electronic energy + Delta-G solvation = -21772.844196 eV Core-core repulsion = 18597.180599 eV Total energy + Delta-G solvation = -3175.663597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.05345 -37.60505 -35.86654 -33.28070 -32.61844 -32.21093 -29.57619 -27.84768 -27.47359 -26.88981 -24.81764 -22.84069 -22.16670 -21.17666 -20.59913 -20.03740 -16.83402 -16.35268 -15.80083 -15.62747 -15.50116 -14.78989 -14.61745 -14.23203 -13.88945 -13.74330 -13.53654 -13.37371 -13.03547 -12.65229 -12.41035 -12.25961 -11.95913 -11.89753 -11.82232 -11.69285 -11.29007 -11.09909 -11.06138 -10.96565 -10.87363 -10.73870 -10.66216 -10.60609 -10.21557 -9.79539 -9.48735 -9.01794 -8.70701 -8.06717 -7.90525 -6.04699 -4.05989 3.36441 3.38790 3.42939 3.65605 4.16148 4.33422 4.40536 4.61464 4.71607 4.94223 5.00045 5.04712 5.10880 5.27589 5.31729 5.40632 5.43269 5.47334 5.49450 5.52553 5.58643 5.67328 5.74850 5.77514 5.80787 5.84733 6.04999 6.07245 6.15199 6.17002 6.17613 6.27261 6.42957 6.53398 7.05679 7.18352 7.27317 7.49637 7.52793 7.55862 7.85475 8.23484 8.67377 9.07851 9.58615 11.06898 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.003793 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.144224 B = 7379.839068 C = 8235.318086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.058 3.942 4 C 0.068 3.932 5 O -0.391 6.391 6 C 0.195 3.805 7 C -0.513 4.513 8 H 0.065 0.935 9 C 0.056 3.944 10 N -0.900 5.900 11 Si 0.906 3.094 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.054 3.946 16 C 0.090 3.910 17 H 0.077 0.923 18 C -0.152 4.152 19 C -0.145 4.145 20 C 0.096 3.904 21 C -0.151 4.151 22 C -0.154 4.154 23 O -0.356 6.356 24 H 0.103 0.897 25 H 0.010 0.990 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.002 0.998 32 H 0.005 0.995 33 H 0.264 0.736 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.348 -15.685 16.212 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.255 5.255 3 C -0.069 4.069 4 C -0.010 4.010 5 O -0.311 6.311 6 C 0.121 3.879 7 C -0.551 4.551 8 H 0.083 0.917 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.734 3.266 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.074 4.074 16 C 0.032 3.968 17 H 0.095 0.905 18 C -0.190 4.190 19 C -0.182 4.182 20 C 0.057 3.943 21 C -0.208 4.208 22 C -0.211 4.211 23 O -0.276 6.276 24 H 0.121 0.879 25 H 0.028 0.972 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.184 -15.752 15.626 23.322 hybrid contribution -0.734 0.509 0.368 0.966 sum 6.450 -15.244 15.994 23.017 Atomic orbital electron populations 1.22808 0.85345 1.02620 1.02074 1.61934 1.10044 1.12851 1.40688 1.22210 0.98777 0.88890 0.97065 1.22249 0.86330 0.97481 0.94905 1.87817 1.21053 1.84440 1.37753 1.20163 0.96919 0.92134 0.78708 1.21027 0.91165 1.41713 1.01184 0.91687 1.24936 0.98592 0.95311 0.95629 1.69954 1.34309 1.42781 1.06843 0.86422 0.84478 0.78542 0.77178 1.20091 1.21217 1.19996 1.22317 0.99738 0.92551 0.92832 1.23010 0.82761 0.93683 0.97367 0.90528 1.23274 1.00634 0.95500 0.99571 1.23173 0.95327 0.97718 1.02002 1.22077 0.94734 0.84423 0.93104 1.22061 0.99756 1.01590 0.97436 1.22092 1.02350 0.98057 0.98611 1.88568 1.25914 1.31012 1.82101 0.87911 0.97158 0.90330 0.94298 0.90897 0.94466 0.93719 0.97995 0.97715 0.92681 0.90462 0.94450 0.90095 0.90601 0.90353 0.90534 0.91842 0.91972 0.92409 0.92131 0.92023 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.98 60.06 0.54 0.88 16 2 N -0.53 -8.75 4.60 -242.92 -1.12 -9.86 16 3 C 0.06 0.94 5.56 -3.82 -0.02 0.92 16 4 C 0.07 1.33 6.26 37.16 0.23 1.57 16 5 O -0.39 -9.59 7.48 -35.23 -0.26 -9.85 16 6 C 0.20 5.48 5.69 36.00 0.20 5.69 16 7 C -0.51 -15.37 9.43 -34.44 -0.32 -15.70 16 8 H 0.06 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 11 Si 0.91 22.27 29.54 -169.99 -5.02 17.25 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.05 0.69 4.87 -3.82 -0.02 0.67 16 16 C 0.09 1.07 3.67 -25.70 -0.09 0.97 16 17 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.15 -1.31 6.57 -24.48 -0.16 -1.47 16 19 C -0.14 -1.19 6.09 -24.79 -0.15 -1.34 16 20 C 0.10 1.00 1.27 -89.90 -0.11 0.88 16 21 C -0.15 -1.41 8.73 37.16 0.32 -1.09 16 22 C -0.15 -1.51 8.75 37.16 0.32 -1.19 16 23 O -0.36 -4.83 7.65 -35.23 -0.27 -5.10 16 24 H 0.10 2.27 5.47 -51.93 -0.28 1.99 16 25 H 0.01 0.18 8.08 -51.93 -0.42 -0.24 16 26 H 0.08 1.42 5.44 -51.93 -0.28 1.14 16 27 H 0.04 0.64 7.95 -51.93 -0.41 0.23 16 28 H 0.07 0.95 7.55 -51.93 -0.39 0.55 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 32 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.08 0.83 7.54 -51.93 -0.39 0.44 16 35 H 0.04 0.49 7.96 -51.93 -0.41 0.07 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 38 H 0.08 0.54 7.82 -51.93 -0.41 0.13 16 39 H 0.08 0.59 7.85 -51.93 -0.41 0.18 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -31.98 352.74 -8.42 -40.40 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -8.45 Total: -3.80 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 0.64 Total: -7.63 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.38 Total: -36.58 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.53 Total: -14.96 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.98 -8.42 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691867288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.611 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds