Wall clock time and date at job start Mon Mar 30 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99788 * 2 1 4 4 C 1.53002 * 109.46735 * 283.31130 * 3 2 1 5 5 O 1.42903 * 109.47416 * 65.71000 * 4 3 2 6 6 C 1.42900 * 114.00423 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47094 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00516 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99744 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00101 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00171 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47209 * 59.99929 * 11 9 7 13 13 H 1.48491 * 109.47470 * 180.02562 * 11 9 7 14 14 H 1.48509 * 109.47196 * 300.00152 * 11 9 7 15 15 C 1.46900 * 111.00123 * 123.94493 * 2 1 3 16 16 C 1.53003 * 109.46615 * 77.88799 * 15 2 1 17 17 H 1.09001 * 110.27583 * 55.51561 * 16 15 2 18 18 C 1.54948 * 110.31129 * 177.71084 * 16 15 2 19 19 C 1.55299 * 100.94369 * 155.36048 * 18 16 15 20 20 C 1.54385 * 102.25386 * 325.86549 * 19 18 16 21 21 C 1.52999 * 109.83151 * 261.84688 * 20 19 18 22 22 C 1.52997 * 109.82809 * 140.86797 * 20 19 18 23 23 O 1.43241 * 107.58677 * 21.35998 * 20 19 18 24 24 H 1.08996 * 109.47320 * 59.77982 * 1 2 3 25 25 H 1.09000 * 109.47306 * 299.77248 * 1 2 3 26 26 H 1.08999 * 109.46626 * 179.77649 * 1 2 3 27 27 H 1.08998 * 109.46969 * 43.30719 * 3 2 1 28 28 H 1.09000 * 109.47401 * 163.31055 * 3 2 1 29 29 H 1.09000 * 109.46902 * 185.70811 * 4 3 2 30 30 H 1.08997 * 109.47195 * 305.70804 * 4 3 2 31 31 H 1.09000 * 109.46680 * 300.00352 * 6 5 4 32 32 H 1.09003 * 109.46644 * 60.00128 * 6 5 4 33 33 H 0.97000 * 120.00540 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47449 * 197.88482 * 15 2 1 35 35 H 1.08998 * 109.47730 * 317.88822 * 15 2 1 36 36 H 1.09001 * 111.12731 * 273.28129 * 18 16 15 37 37 H 1.09000 * 111.11948 * 37.44040 * 18 16 15 38 38 H 1.09001 * 110.84765 * 207.68031 * 19 18 16 39 39 H 1.08993 * 110.85143 * 84.05629 * 19 18 16 40 40 H 1.09002 * 109.46972 * 179.58800 * 21 20 19 41 41 H 1.09003 * 109.46926 * 299.58199 * 21 20 19 42 42 H 1.08992 * 109.47323 * 59.58437 * 21 20 19 43 43 H 1.08996 * 109.47441 * 300.41717 * 22 20 19 44 44 H 1.09007 * 109.46994 * 60.41902 * 22 20 19 45 45 H 1.08999 * 109.47173 * 180.41270 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.8680 1.9666 -1.4038 5 8 0.4858 2.1075 -1.7379 6 6 0.2547 2.6583 -3.0361 7 6 -1.2286 2.7609 -3.2815 8 1 -1.9252 2.4381 -2.5220 9 6 -1.6963 3.2678 -4.4754 10 7 -0.8481 3.6613 -5.4001 11 14 -3.5350 3.3942 -4.7800 12 1 -4.1477 4.2737 -3.7522 13 1 -3.7750 3.9667 -6.1289 14 1 -4.1440 2.0420 -4.7012 15 6 1.9955 -0.7658 1.1377 16 6 1.8956 -2.2623 0.8350 17 1 2.4069 -2.4935 -0.0995 18 6 2.4989 -3.0879 1.9991 19 6 1.7480 -4.4360 1.8245 20 6 0.3636 -3.9768 1.3186 21 6 -0.6266 -3.9329 2.4841 22 6 -0.1412 -4.9399 0.2423 23 8 0.5188 -2.6657 0.7631 24 1 -0.3634 0.5172 -0.8880 25 1 -0.3634 0.5103 0.8920 26 1 -0.3632 -1.0277 -0.0040 27 1 1.4274 1.9786 0.7049 28 1 3.0446 1.3580 0.2951 29 1 2.3494 2.9442 -1.4290 30 1 2.3503 1.3055 -2.1238 31 1 0.7026 3.6503 -3.0947 32 1 0.7036 2.0118 -3.7902 33 1 -1.1771 4.0176 -6.2401 34 1 3.0387 -0.4977 1.3046 35 1 1.4140 -0.5362 2.0306 36 1 3.5738 -3.2177 1.8729 37 1 2.2705 -2.6329 2.9629 38 1 1.6593 -4.9569 2.7779 39 1 2.2435 -5.0629 1.0833 40 1 -1.5997 -3.6011 2.1218 41 1 -0.7208 -4.9282 2.9185 42 1 -0.2650 -3.2383 3.2421 43 1 0.5644 -4.9589 -0.5883 44 1 -0.2327 -5.9408 0.6643 45 1 -1.1152 -4.6064 -0.1159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691867288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:14 Heat of formation + Delta-G solvation = -120.927404 kcal Electronic energy + Delta-G solvation = -21773.751041 eV Core-core repulsion = 18597.180599 eV Total energy + Delta-G solvation = -3176.570442 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.90591 -39.14859 -37.48045 -34.92926 -34.09900 -33.05637 -31.07045 -29.07443 -28.89907 -28.22264 -26.09734 -24.45701 -23.80822 -22.13864 -21.88947 -20.84970 -18.61642 -17.75014 -17.44173 -17.10134 -16.63875 -16.35083 -15.90798 -15.54690 -15.37077 -15.16409 -14.58774 -14.43336 -14.18265 -13.82632 -13.63513 -13.45531 -13.21555 -13.07138 -12.99711 -12.89240 -12.66922 -12.58685 -12.49918 -12.41739 -12.31706 -12.09484 -12.03898 -11.57291 -11.43851 -11.37523 -11.15510 -10.81450 -10.39901 -10.13809 -9.21367 -8.31450 -6.43643 1.38709 1.43884 1.52128 2.34783 2.83930 2.99897 3.02147 3.25709 3.62042 3.90725 3.94145 4.09680 4.15211 4.25634 4.25855 4.35816 4.43093 4.55433 4.58472 4.61788 4.67499 4.75195 4.76552 4.79299 4.84173 4.86817 4.93506 4.95523 4.99366 5.04106 5.05504 5.18375 5.20471 5.27469 5.32503 5.43228 5.55089 5.59067 5.97919 6.13738 6.24289 6.41574 6.56182 6.84935 7.28297 8.80898 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.003793 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.144224 B = 7379.839068 C = 8235.318086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.546 5.546 3 C 0.067 3.933 4 C 0.058 3.942 5 O -0.399 6.399 6 C 0.210 3.790 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.982 3.018 12 H -0.265 1.265 13 H -0.274 1.274 14 H -0.267 1.267 15 C 0.056 3.944 16 C 0.084 3.916 17 H 0.062 0.938 18 C -0.141 4.141 19 C -0.138 4.138 20 C 0.084 3.916 21 C -0.148 4.148 22 C -0.153 4.153 23 O -0.388 6.388 24 H 0.061 0.939 25 H 0.010 0.990 26 H 0.078 0.922 27 H 0.035 0.965 28 H 0.115 0.885 29 H 0.049 0.951 30 H 0.039 0.961 31 H -0.016 1.016 32 H -0.019 1.019 33 H 0.271 0.729 34 H 0.105 0.895 35 H 0.037 0.963 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.085 0.915 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.694 -16.780 17.868 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.270 5.270 3 C -0.061 4.061 4 C -0.020 4.020 5 O -0.319 6.319 6 C 0.135 3.865 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.192 4.192 10 N -0.571 5.571 11 Si 0.804 3.196 12 H -0.190 1.190 13 H -0.198 1.198 14 H -0.192 1.192 15 C -0.071 4.071 16 C 0.026 3.974 17 H 0.080 0.920 18 C -0.179 4.179 19 C -0.176 4.176 20 C 0.045 3.955 21 C -0.205 4.205 22 C -0.210 4.210 23 O -0.309 6.309 24 H 0.079 0.921 25 H 0.028 0.972 26 H 0.096 0.904 27 H 0.053 0.947 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.002 0.998 32 H -0.002 1.002 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.555 -16.859 17.303 25.312 hybrid contribution -0.761 0.810 -0.134 1.119 sum 6.794 -16.049 17.169 24.464 Atomic orbital electron populations 1.22515 0.87105 1.01898 0.99917 1.61873 1.08616 1.13364 1.43134 1.22209 1.01171 0.88486 0.94253 1.22610 0.83801 0.98426 0.97127 1.87834 1.24416 1.84070 1.35624 1.19766 0.96137 0.90670 0.79912 1.21352 0.92017 1.43078 1.01985 0.92179 1.25953 1.04233 0.94112 0.94878 1.70064 1.36859 1.42774 1.07355 0.85260 0.77577 0.79014 0.77714 1.18951 1.19832 1.19169 1.22435 1.00970 0.92561 0.91166 1.23060 0.82493 0.93596 0.98268 0.91974 1.23236 1.01588 0.94809 0.98256 1.23166 0.93590 0.97728 1.03066 1.22335 0.96465 0.83327 0.93388 1.22046 0.98568 1.02864 0.97033 1.22099 1.01078 0.99306 0.98530 1.88524 1.26946 1.32755 1.82695 0.92054 0.97152 0.90372 0.94661 0.86697 0.93319 0.94253 0.99811 1.00166 0.92057 0.87670 0.94455 0.88121 0.89884 0.88281 0.90002 0.93522 0.89678 0.92467 0.92995 0.89648 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.27 8.98 127.69 1.15 2.41 16 2 N -0.55 -17.72 4.60 -922.45 -4.24 -21.96 16 3 C 0.07 2.06 5.56 86.30 0.48 2.54 16 4 C 0.06 2.28 6.26 71.98 0.45 2.73 16 5 O -0.40 -20.38 7.48 -148.98 -1.11 -21.50 16 6 C 0.21 12.36 5.69 71.23 0.41 12.76 16 7 C -0.55 -33.77 9.43 25.60 0.24 -33.53 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.01 0.39 5.46 84.66 0.46 0.86 16 10 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 11 Si 0.98 45.78 29.54 68.60 2.03 47.80 16 12 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 C 0.06 1.34 4.87 86.30 0.42 1.76 16 16 C 0.08 1.88 3.67 31.26 0.11 2.00 16 17 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 18 C -0.14 -2.02 6.57 32.05 0.21 -1.81 16 19 C -0.14 -1.90 6.09 31.85 0.19 -1.70 16 20 C 0.08 1.64 1.27 -10.32 -0.01 1.62 16 21 C -0.15 -2.56 8.73 71.98 0.63 -1.93 16 22 C -0.15 -2.92 8.75 71.98 0.63 -2.29 16 23 O -0.39 -10.46 7.65 -148.98 -1.14 -11.60 16 24 H 0.06 2.85 5.47 -2.39 -0.01 2.83 16 25 H 0.01 0.37 8.08 -2.39 -0.02 0.35 16 26 H 0.08 2.94 5.44 -2.39 -0.01 2.92 16 27 H 0.04 1.13 7.95 -2.39 -0.02 1.11 16 28 H 0.12 2.62 7.55 -2.39 -0.02 2.60 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.11 1.89 7.54 -2.39 -0.02 1.87 16 35 H 0.04 0.90 7.96 -2.39 -0.02 0.88 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.10 8.06 -2.39 -0.02 1.08 16 38 H 0.10 0.98 7.82 -2.39 -0.02 0.96 16 39 H 0.08 1.05 7.85 -2.39 -0.02 1.03 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -71.31 352.74 2.10 -69.21 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.92 Total: 9.98 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 5.37 Total: -14.59 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -3.96 Total: -79.31 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -2.25 Total: -33.10 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -71.31 2.10 -69.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691867288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.720 kcal (2) G-P(sol) polarization free energy of solvation -71.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds