Wall clock time and date at job start Mon Mar 30 2020 04:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00420 * 2 1 4 4 C 1.53000 * 109.47002 * 179.97438 * 3 2 1 5 5 C 1.50690 * 109.88219 * 58.96957 * 4 3 2 6 6 O 1.20829 * 119.99881 * 347.43277 * 5 4 3 7 7 O 1.34228 * 120.00207 * 167.42698 * 5 4 3 8 8 C 1.54316 * 110.02610 * 297.84667 * 4 3 2 9 9 C 1.55143 * 103.02191 * 262.80830 * 8 4 3 10 10 C 1.54906 * 101.65000 * 324.34426 * 9 8 4 11 11 N 1.47446 * 109.88213 * 179.97438 * 4 3 2 12 12 C 1.46906 * 110.99897 * 242.82156 * 11 4 3 13 13 C 1.52997 * 109.46790 * 166.73160 * 12 11 4 14 14 C 1.53002 * 109.46918 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47285 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99677 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99859 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99882 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99515 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47464 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46945 * 120.00078 * 19 17 15 22 22 H 1.48504 * 109.46747 * 239.99972 * 19 17 15 23 23 H 1.09000 * 109.46711 * 60.00462 * 1 2 3 24 24 H 1.09002 * 109.46900 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47235 * 300.00165 * 1 2 3 26 26 H 1.09004 * 109.46972 * 59.99502 * 3 2 1 27 27 H 1.09000 * 109.46877 * 299.99898 * 3 2 1 28 28 H 0.96700 * 117.00565 * 179.97438 * 7 5 4 29 29 H 1.09008 * 110.70261 * 21.18811 * 8 4 3 30 30 H 1.08991 * 110.70763 * 144.42149 * 8 4 3 31 31 H 1.08993 * 110.98970 * 82.43638 * 9 8 4 32 32 H 1.09001 * 110.98912 * 206.25367 * 9 8 4 33 33 H 1.08995 * 110.37253 * 278.23964 * 10 9 8 34 34 H 1.09004 * 110.36719 * 155.90019 * 10 9 8 35 35 H 1.08998 * 109.46517 * 46.73747 * 12 11 4 36 36 H 1.09000 * 109.47258 * 286.73418 * 12 11 4 37 37 H 1.09003 * 109.47384 * 60.00268 * 13 12 11 38 38 H 1.09000 * 109.47431 * 300.00152 * 13 12 11 39 39 H 1.09000 * 109.46849 * 300.00086 * 14 13 12 40 40 H 1.09003 * 109.47219 * 59.99745 * 14 13 12 41 41 H 0.97008 * 119.99452 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9892 0.4155 -1.2133 6 8 3.1841 -0.1898 -1.8806 7 8 5.2876 0.4032 -1.5535 8 6 4.0083 0.4678 1.2829 9 6 4.3996 1.6435 2.2165 10 6 4.9880 2.6614 1.2078 11 7 4.1450 2.5271 0.0000 12 6 4.9335 2.7467 -1.2199 13 6 5.2715 4.2334 -1.3478 14 6 6.0921 4.4623 -2.6187 15 6 6.4256 5.9266 -2.7444 16 1 6.0858 6.6242 -1.9933 17 6 7.1645 6.3755 -3.8185 18 7 7.5778 5.5260 -4.7333 19 14 7.5772 8.1907 -3.9746 20 1 6.9983 8.9307 -2.8247 21 1 9.0520 8.3640 -3.9836 22 1 7.0088 8.7203 -5.2403 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 5.5307 -0.1043 -2.3399 29 1 3.1980 -0.1170 1.7186 30 1 4.8722 -0.1635 1.0754 31 1 3.5224 2.0529 2.7174 32 1 5.1519 1.3327 2.9414 33 1 6.0236 2.4116 0.9773 34 1 4.9206 3.6734 1.6071 35 1 4.3556 2.4295 -2.0879 36 1 5.8555 2.1678 -1.1658 37 1 5.8493 4.5507 -0.4797 38 1 4.3495 4.8123 -1.4019 39 1 7.0141 3.8833 -2.5649 40 1 5.5140 4.1450 -3.4866 41 1 8.0980 5.8419 -5.4888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692347790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:04 Heat of formation + Delta-G solvation = -130.852619 kcal Electronic energy + Delta-G solvation = -22097.838910 eV Core-core repulsion = 18785.004983 eV Total energy + Delta-G solvation = -3312.833927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.10416 -38.46973 -37.54401 -35.95475 -34.36323 -32.47008 -30.96068 -30.09544 -27.02433 -26.25629 -25.03224 -23.52527 -22.83311 -21.44684 -19.94564 -19.65115 -17.94524 -16.99183 -16.38500 -16.17392 -15.72608 -15.48828 -15.16696 -15.08183 -14.63129 -14.42574 -13.94519 -13.14932 -13.12780 -12.63548 -12.52748 -12.37310 -12.13160 -11.82287 -11.55020 -11.46253 -11.30604 -11.19684 -11.04021 -10.81911 -10.66677 -10.51401 -10.47550 -10.23017 -9.65072 -9.61809 -9.33402 -9.03814 -8.33348 -8.31899 -5.98187 -4.00037 2.25667 3.03364 3.32251 3.39537 3.42013 3.44660 4.28581 4.40001 4.49142 4.55266 4.75771 5.03453 5.22519 5.24631 5.26711 5.37480 5.37907 5.49042 5.53858 5.57947 5.60386 5.72490 5.76834 5.81854 5.96919 6.05428 6.09241 6.38658 6.60126 6.66750 6.70001 6.96171 7.10681 7.18141 7.25255 7.70546 7.85013 8.01351 8.02543 8.45629 9.07329 9.63934 11.13307 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026247 B = 0.004226 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.519251 B = 6624.225784 C = 6837.458617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.381 6.381 3 C 0.095 3.905 4 C 0.114 3.886 5 C 0.472 3.528 6 O -0.497 6.497 7 O -0.509 6.509 8 C -0.124 4.124 9 C -0.128 4.128 10 C 0.043 3.957 11 N -0.510 5.510 12 C 0.044 3.956 13 C -0.103 4.103 14 C 0.023 3.977 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.041 0.959 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.402 0.598 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.015 0.985 40 H 0.014 0.986 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.259 -11.573 13.446 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.299 6.299 3 C 0.017 3.983 4 C 0.023 3.977 5 C 0.312 3.688 6 O -0.382 6.382 7 O -0.322 6.322 8 C -0.163 4.163 9 C -0.166 4.166 10 C -0.085 4.085 11 N -0.237 5.237 12 C -0.082 4.082 13 C -0.141 4.141 14 C -0.015 4.015 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.059 0.941 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.261 0.739 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.789 -11.331 13.424 20.110 hybrid contribution 0.837 0.319 -0.952 1.308 sum -8.952 -11.012 12.471 18.893 Atomic orbital electron populations 1.22674 0.81046 1.02469 0.99824 1.87881 1.19465 1.27126 1.95378 1.22115 0.89643 0.84864 1.01676 1.21839 0.95350 0.89024 0.91533 1.23743 0.80205 0.78737 0.86143 1.90719 1.54428 1.41307 1.51755 1.84922 1.28167 1.69119 1.49983 1.22794 1.02096 0.98195 0.93184 1.22766 1.01378 0.94965 0.97450 1.23165 0.95779 1.00289 0.89229 1.63660 1.33685 1.21925 1.04427 1.22999 0.96316 0.99838 0.89064 1.21643 1.00183 0.91657 1.00578 1.19065 0.94505 0.96662 0.91268 1.21285 1.33086 0.93487 1.07683 0.92612 1.25027 0.96023 0.97598 0.95871 1.69980 1.37521 1.34029 1.12051 0.86549 0.78018 0.85542 0.77975 1.19721 1.21055 1.21058 0.94051 0.89832 0.94329 0.91460 0.92268 0.73863 0.89222 0.90512 0.90448 0.90209 0.92429 0.89321 0.92165 0.91165 0.93260 0.92809 0.96670 0.96795 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.12 8.59 -55.76 -0.48 -5.60 16 3 C 0.09 1.25 4.79 37.16 0.18 1.43 16 4 C 0.11 1.57 0.92 -131.77 -0.12 1.45 16 5 C 0.47 7.30 5.22 36.00 0.19 7.49 16 6 O -0.50 -8.90 15.85 -25.64 -0.41 -9.31 16 7 O -0.51 -7.01 9.78 -39.25 -0.38 -7.39 16 8 C -0.12 -1.39 5.91 -24.91 -0.15 -1.54 16 9 C -0.13 -1.24 7.08 -24.59 -0.17 -1.41 16 10 C 0.04 0.53 5.95 -2.27 -0.01 0.52 16 11 N -0.51 -7.56 4.77 -217.03 -1.03 -8.59 16 12 C 0.04 0.78 3.33 -3.82 -0.01 0.76 16 13 C -0.10 -2.13 5.24 -26.73 -0.14 -2.27 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.40 4.08 9.10 45.56 0.41 4.49 16 29 H 0.09 0.94 7.34 -51.92 -0.38 0.56 16 30 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.76 7.57 -51.93 -0.39 0.36 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.14 6.64 -51.93 -0.34 0.80 16 36 H 0.07 1.25 5.66 -51.93 -0.29 0.95 16 37 H 0.05 0.99 7.61 -51.93 -0.40 0.60 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 329.50 15.07 4.97 4.97 Total: -1.00 -33.37 329.50 -7.30 -40.66 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.99 Total: 0.08 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 0.32 Total: -5.21 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.30 Total: -34.96 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -1.27 Total: -22.30 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.37 -7.30 -40.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692347790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.189 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds