Wall clock time and date at job start Mon Mar 30 2020 04:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00420 * 2 1 4 4 C 1.53000 * 109.47002 * 179.97438 * 3 2 1 5 5 C 1.50690 * 109.88219 * 58.96957 * 4 3 2 6 6 O 1.20829 * 119.99881 * 347.43277 * 5 4 3 7 7 O 1.34228 * 120.00207 * 167.42698 * 5 4 3 8 8 C 1.54316 * 110.02610 * 297.84667 * 4 3 2 9 9 C 1.55143 * 103.02191 * 262.80830 * 8 4 3 10 10 C 1.54906 * 101.65000 * 324.34426 * 9 8 4 11 11 N 1.47446 * 109.88213 * 179.97438 * 4 3 2 12 12 C 1.46906 * 110.99897 * 242.82156 * 11 4 3 13 13 C 1.52997 * 109.46790 * 166.73160 * 12 11 4 14 14 C 1.53002 * 109.46918 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47285 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99677 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99859 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99882 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99515 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47464 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46945 * 120.00078 * 19 17 15 22 22 H 1.48504 * 109.46747 * 239.99972 * 19 17 15 23 23 H 1.09000 * 109.46711 * 60.00462 * 1 2 3 24 24 H 1.09002 * 109.46900 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47235 * 300.00165 * 1 2 3 26 26 H 1.09004 * 109.46972 * 59.99502 * 3 2 1 27 27 H 1.09000 * 109.46877 * 299.99898 * 3 2 1 28 28 H 0.96700 * 117.00565 * 179.97438 * 7 5 4 29 29 H 1.09008 * 110.70261 * 21.18811 * 8 4 3 30 30 H 1.08991 * 110.70763 * 144.42149 * 8 4 3 31 31 H 1.08993 * 110.98970 * 82.43638 * 9 8 4 32 32 H 1.09001 * 110.98912 * 206.25367 * 9 8 4 33 33 H 1.08995 * 110.37253 * 278.23964 * 10 9 8 34 34 H 1.09004 * 110.36719 * 155.90019 * 10 9 8 35 35 H 1.08998 * 109.46517 * 46.73747 * 12 11 4 36 36 H 1.09000 * 109.47258 * 286.73418 * 12 11 4 37 37 H 1.09003 * 109.47384 * 60.00268 * 13 12 11 38 38 H 1.09000 * 109.47431 * 300.00152 * 13 12 11 39 39 H 1.09000 * 109.46849 * 300.00086 * 14 13 12 40 40 H 1.09003 * 109.47219 * 59.99745 * 14 13 12 41 41 H 0.97008 * 119.99452 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9892 0.4155 -1.2133 6 8 3.1841 -0.1898 -1.8806 7 8 5.2876 0.4032 -1.5535 8 6 4.0083 0.4678 1.2829 9 6 4.3996 1.6435 2.2165 10 6 4.9880 2.6614 1.2078 11 7 4.1450 2.5271 0.0000 12 6 4.9335 2.7467 -1.2199 13 6 5.2715 4.2334 -1.3478 14 6 6.0921 4.4623 -2.6187 15 6 6.4256 5.9266 -2.7444 16 1 6.0858 6.6242 -1.9933 17 6 7.1645 6.3755 -3.8185 18 7 7.5778 5.5260 -4.7333 19 14 7.5772 8.1907 -3.9746 20 1 6.9983 8.9307 -2.8247 21 1 9.0520 8.3640 -3.9836 22 1 7.0088 8.7203 -5.2403 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 5.5307 -0.1043 -2.3399 29 1 3.1980 -0.1170 1.7186 30 1 4.8722 -0.1635 1.0754 31 1 3.5224 2.0529 2.7174 32 1 5.1519 1.3327 2.9414 33 1 6.0236 2.4116 0.9773 34 1 4.9206 3.6734 1.6071 35 1 4.3556 2.4295 -2.0879 36 1 5.8555 2.1678 -1.1658 37 1 5.8493 4.5507 -0.4797 38 1 4.3495 4.8123 -1.4019 39 1 7.0141 3.8833 -2.5649 40 1 5.5140 4.1450 -3.4866 41 1 8.0980 5.8419 -5.4888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692347790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:04 Heat of formation + Delta-G solvation = -154.320570 kcal Electronic energy + Delta-G solvation = -22098.856557 eV Core-core repulsion = 18785.004983 eV Total energy + Delta-G solvation = -3313.851573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.25548 -39.59893 -38.56668 -37.13796 -36.15299 -34.28323 -31.98307 -31.65216 -28.03232 -27.87280 -26.11767 -24.79846 -24.35993 -22.69750 -21.47097 -20.80139 -19.16017 -18.57897 -17.90897 -17.33993 -16.80840 -16.59615 -16.43314 -16.29696 -16.17856 -15.84122 -15.12308 -14.56686 -14.35610 -14.13473 -13.87061 -13.44956 -13.41045 -13.17358 -13.03168 -12.84791 -12.68726 -12.43222 -12.31957 -12.18333 -12.06120 -11.97949 -11.66100 -11.49995 -11.38210 -11.35691 -11.07900 -10.57943 -10.55254 -9.52608 -8.19548 -6.30403 1.05846 1.40661 1.41125 1.54649 1.94963 2.37443 2.44328 3.13917 3.24521 3.42213 3.58756 3.79882 4.14347 4.17529 4.24409 4.35676 4.40736 4.44177 4.56125 4.59802 4.63072 4.71971 4.83085 4.86155 4.89965 4.93402 5.05525 5.06895 5.11544 5.24870 5.27659 5.50923 5.52573 5.72490 5.80622 5.86300 5.93836 6.21007 6.26685 6.86529 6.88465 7.38955 8.92635 Molecular weight = 271.16amu Principal moments of inertia in cm(-1) A = 0.026247 B = 0.004226 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.519251 B = 6624.225784 C = 6837.458617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.098 3.902 4 C 0.108 3.892 5 C 0.469 3.531 6 O -0.528 6.528 7 O -0.511 6.511 8 C -0.119 4.119 9 C -0.112 4.112 10 C 0.034 3.966 11 N -0.513 5.513 12 C 0.061 3.939 13 C -0.087 4.087 14 C 0.027 3.973 15 C -0.540 4.540 16 H 0.061 0.939 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.966 3.034 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.280 1.280 23 H 0.035 0.965 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.037 0.963 28 H 0.416 0.584 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.048 0.952 39 H -0.006 1.006 40 H -0.016 1.016 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 -10.954 15.637 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.318 6.318 3 C 0.020 3.980 4 C 0.017 3.983 5 C 0.311 3.689 6 O -0.416 6.416 7 O -0.325 6.325 8 C -0.157 4.157 9 C -0.150 4.150 10 C -0.092 4.092 11 N -0.240 5.240 12 C -0.066 4.066 13 C -0.125 4.125 14 C -0.010 4.010 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.184 1.184 21 H -0.202 1.202 22 H -0.206 1.206 23 H 0.054 0.946 24 H 0.115 0.885 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.055 0.945 28 H 0.277 0.723 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.122 0.878 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.012 0.988 40 H 0.002 0.998 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.100 -10.719 15.633 21.478 hybrid contribution 0.928 0.072 -1.671 1.913 sum -9.172 -10.647 13.962 19.810 Atomic orbital electron populations 1.22880 0.79394 1.03695 1.00646 1.87849 1.21341 1.27124 1.95497 1.22082 0.89244 0.85010 1.01649 1.22013 0.95772 0.88404 0.92079 1.24203 0.80161 0.78262 0.86301 1.90698 1.55162 1.42865 1.52854 1.84867 1.27584 1.69303 1.50743 1.22813 1.02359 0.98618 0.91940 1.22758 1.02470 0.93071 0.96714 1.23310 0.95286 1.01679 0.88947 1.63581 1.33577 1.22944 1.03899 1.22631 0.96396 0.97383 0.90154 1.21380 0.99014 0.93977 0.98128 1.18950 0.93861 0.95477 0.92732 1.21713 1.33325 0.94685 1.08080 0.92092 1.25990 0.95737 1.02772 0.95390 1.70112 1.38175 1.36479 1.12706 0.85391 0.78002 0.79310 0.78300 1.18440 1.20248 1.20568 0.94606 0.88487 0.92088 0.89177 0.94509 0.72259 0.88119 0.90609 0.88878 0.87797 0.93123 0.88752 0.94089 0.91303 0.92288 0.93301 0.98781 0.99757 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 113.37 1.25 1.80 16 2 O -0.40 -10.31 8.59 -129.36 -1.11 -11.42 16 3 C 0.10 2.48 4.79 71.98 0.34 2.83 16 4 C 0.11 2.88 0.92 3.12 0.00 2.88 16 5 C 0.47 14.60 5.22 71.23 0.37 14.97 16 6 O -0.53 -19.30 15.85 28.54 0.45 -18.85 16 7 O -0.51 -14.22 9.78 -51.40 -0.50 -14.72 16 8 C -0.12 -2.37 5.91 31.78 0.19 -2.18 16 9 C -0.11 -1.79 7.08 31.98 0.23 -1.57 16 10 C 0.03 0.79 5.95 86.76 0.52 1.31 16 11 N -0.51 -14.70 4.77 -840.55 -4.01 -18.71 16 12 C 0.06 2.19 3.33 86.30 0.29 2.48 16 13 C -0.09 -3.65 5.24 30.59 0.16 -3.49 16 14 C 0.03 1.47 4.97 29.85 0.15 1.62 16 15 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 16 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 17 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 18 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 19 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.42 8.69 9.10 -74.06 -0.67 8.01 16 29 H 0.10 1.82 7.34 -2.38 -0.02 1.81 16 30 H 0.08 1.53 7.84 -2.39 -0.02 1.51 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.24 7.57 -2.39 -0.02 1.22 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.61 6.64 -2.39 -0.02 1.59 16 36 H 0.07 2.47 5.66 -2.39 -0.01 2.46 16 37 H 0.06 2.35 7.61 -2.39 -0.02 2.33 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -72.49 329.50 1.67 -70.82 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.34 Total: 13.36 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 4.19 Total: -9.87 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -3.72 Total: -75.91 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.16 Total: -45.00 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -72.49 1.67 -70.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692347790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.501 kcal (2) G-P(sol) polarization free energy of solvation -72.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds