Wall clock time and date at job start Mon Mar 30 2020 05:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.51195 * 2 1 4 4 C 1.53096 * 109.50456 * 120.09472 * 2 1 3 5 5 N 1.47019 * 109.25360 * 176.82553 * 4 2 1 6 6 C 1.46904 * 110.99608 * 177.60443 * 5 4 2 7 7 C 1.47015 * 110.75398 * 301.37668 * 5 4 2 8 8 C 1.53100 * 109.25373 * 58.61801 * 7 5 4 9 9 H 1.09002 * 109.50506 * 63.08806 * 8 7 5 10 10 C 1.53004 * 109.50446 * 183.17318 * 8 7 5 11 11 N 1.46899 * 109.47081 * 184.91653 * 10 8 7 12 12 C 1.46897 * 111.00067 * 180.02562 * 11 10 8 13 13 C 1.50704 * 109.47263 * 179.97438 * 12 11 10 14 14 O 1.21287 * 119.99866 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99832 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00030 * 180.02562 * 15 13 12 17 17 H 1.08007 * 119.99692 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00842 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99049 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00661 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47054 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47306 * 120.00018 * 20 18 16 23 23 H 1.48504 * 109.47047 * 240.00248 * 20 18 16 24 24 O 1.43018 * 109.53512 * 239.89372 * 2 1 3 25 25 H 1.09004 * 109.46403 * 299.91159 * 1 2 3 26 26 H 1.09003 * 109.47080 * 59.90351 * 1 2 3 27 27 H 1.08991 * 109.47106 * 179.91204 * 1 2 3 28 28 H 1.08991 * 109.51146 * 56.88782 * 4 2 1 29 29 H 1.08997 * 109.50458 * 296.75514 * 4 2 1 30 30 H 1.09005 * 109.46894 * 183.62969 * 6 5 4 31 31 H 1.08995 * 109.47106 * 303.63232 * 6 5 4 32 32 H 1.08998 * 109.46989 * 63.63507 * 6 5 4 33 33 H 1.09005 * 109.50675 * 298.68839 * 7 5 4 34 34 H 1.08990 * 109.50900 * 178.55298 * 7 5 4 35 35 H 1.08994 * 109.46926 * 304.91279 * 10 8 7 36 36 H 1.09003 * 109.46908 * 64.91877 * 10 8 7 37 37 H 1.00906 * 110.99689 * 303.95130 * 11 10 8 38 38 H 1.09001 * 109.47092 * 299.99552 * 12 11 10 39 39 H 1.08997 * 109.47551 * 59.99357 * 12 11 10 40 40 H 0.97001 * 120.00602 * 0.02562 * 15 13 12 41 41 H 0.97009 * 119.99617 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0412 -0.7236 1.2486 5 7 3.5094 -0.7872 1.2051 6 6 4.0447 -1.4253 2.4152 7 6 3.9649 -1.4871 -0.0049 8 6 3.4343 -0.7559 -1.2410 9 1 3.8537 0.2496 -1.2770 10 6 3.8384 -1.5235 -2.5013 11 7 3.4319 -0.7619 -3.6899 12 6 3.8040 -1.4704 -4.9217 13 6 3.3714 -0.6610 -6.1171 14 8 2.8080 0.4013 -5.9583 15 7 3.6105 -1.1176 -7.3623 16 6 3.2174 -0.3810 -8.4497 17 1 2.7164 0.5653 -8.3084 18 6 3.4634 -0.8518 -9.7337 19 7 4.0734 -2.0031 -9.9056 20 14 2.9271 0.1514 -11.2152 21 1 2.2661 1.3991 -10.7552 22 1 4.1153 0.4942 -12.0373 23 1 1.9729 -0.6418 -12.0311 24 8 2.0083 -0.6761 -1.1660 25 1 -0.3632 0.5125 0.8908 26 1 -0.3633 0.5153 -0.8891 27 1 -0.3633 -1.0276 -0.0016 28 1 1.6337 -1.7341 1.2761 29 1 1.7267 -0.1793 2.1390 30 1 5.1341 -1.4016 2.3868 31 1 3.6923 -0.8878 3.2955 32 1 3.7049 -2.4600 2.4610 33 1 3.5881 -2.5099 0.0025 34 1 5.0544 -1.5001 -0.0295 35 1 4.9194 -1.6624 -2.5111 36 1 3.3469 -2.4963 -2.5074 37 1 2.4426 -0.5642 -3.6717 38 1 4.8848 -1.6094 -4.9486 39 1 3.3121 -2.4428 -4.9445 40 1 4.0607 -1.9673 -7.4893 41 1 4.2448 -2.3321 -10.8019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697277670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:43 Heat of formation + Delta-G solvation = -76.866586 kcal Electronic energy + Delta-G solvation = -20917.430189 eV Core-core repulsion = 17639.230023 eV Total energy + Delta-G solvation = -3278.200165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.96232 -38.19251 -36.09053 -35.38473 -33.84787 -32.76957 -31.16399 -29.96975 -27.58405 -27.14359 -25.20287 -23.63424 -22.53612 -21.67953 -20.55564 -19.16626 -17.83279 -16.78236 -16.36290 -16.16475 -15.66170 -15.30590 -15.22811 -14.56126 -14.43396 -14.17642 -13.80121 -13.38629 -13.34211 -12.96680 -12.76339 -12.53085 -12.48098 -12.23589 -11.99539 -11.70184 -11.54867 -11.47681 -11.21358 -11.14529 -11.00603 -10.55493 -10.30629 -10.17767 -9.64800 -9.47208 -8.70274 -8.38980 -7.98020 -7.90184 -6.37284 -3.77688 3.19789 3.29875 3.37593 3.47788 3.57679 3.97198 4.14005 4.33482 4.60163 4.72030 4.86873 4.93747 5.00924 5.12324 5.15559 5.20334 5.23360 5.30137 5.34189 5.36707 5.40034 5.49752 5.51605 5.54870 5.79858 5.85875 5.88256 5.97591 6.03705 6.06261 6.32787 6.61632 6.63286 7.17107 7.30387 7.59960 7.79724 8.11946 8.66850 9.23042 9.59875 10.11813 10.80762 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.040089 B = 0.003046 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.280656 B = 9189.355597 C = 9685.701049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.091 3.909 3 H 0.068 0.932 4 C 0.023 3.977 5 N -0.543 5.543 6 C 0.025 3.975 7 C 0.025 3.975 8 C 0.097 3.903 9 H 0.079 0.921 10 C 0.070 3.930 11 N -0.666 5.666 12 C 0.050 3.950 13 C 0.443 3.557 14 O -0.581 6.581 15 N -0.566 5.566 16 C -0.297 4.297 17 H 0.103 0.897 18 C 0.020 3.980 19 N -0.903 5.903 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 O -0.376 6.376 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.033 0.967 37 H 0.357 0.643 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.392 0.608 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.077 -2.497 22.496 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.086 0.914 4 C -0.105 4.105 5 N -0.267 5.267 6 C -0.123 4.123 7 C -0.104 4.104 8 C 0.039 3.961 9 H 0.097 0.903 10 C -0.061 4.061 11 N -0.299 5.299 12 C -0.083 4.083 13 C 0.228 3.772 14 O -0.465 6.465 15 N -0.203 5.203 16 C -0.426 4.426 17 H 0.121 0.879 18 C -0.181 4.181 19 N -0.545 5.545 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 O -0.295 6.295 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.178 0.822 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.225 0.775 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.794 -1.072 22.266 22.306 hybrid contribution -0.614 -1.692 -0.577 1.890 sum -1.409 -2.763 21.689 21.910 Atomic orbital electron populations 1.21744 0.92795 1.02855 1.02832 1.22100 0.94810 0.95800 0.84043 0.91421 1.22866 0.87677 1.00224 0.99723 1.62178 1.09135 1.52876 1.02496 1.22379 1.00774 0.96830 0.92313 1.22791 1.01226 0.96102 0.90278 1.22190 0.81219 0.99937 0.92778 0.90333 1.21915 1.00608 0.94602 0.88948 1.60080 1.24977 1.45420 0.99414 1.21678 1.01352 0.95144 0.90106 1.19814 0.85338 0.88041 0.83993 1.90526 1.46477 1.23909 1.85569 1.41867 1.52569 1.21599 1.04248 1.19760 1.35134 1.04174 0.83576 0.87883 1.25259 0.97219 0.96555 0.99038 1.69630 1.42126 1.19332 1.23408 0.85799 0.78222 0.79644 0.80677 1.19211 1.20775 1.20818 1.87996 1.20873 1.78138 1.42506 0.91143 0.91082 0.92034 0.94052 0.89834 0.91076 0.91252 0.95595 0.93971 0.89421 0.89722 0.94878 0.82232 0.89644 0.93916 0.77482 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.57 37.16 0.36 -0.97 16 2 C 0.09 0.99 3.43 -26.68 -0.09 0.90 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.02 0.22 4.95 -3.71 -0.02 0.20 16 5 N -0.54 -5.41 4.99 -242.59 -1.21 -6.61 16 6 C 0.03 0.19 9.60 60.07 0.58 0.77 16 7 C 0.02 0.26 4.95 -3.71 -0.02 0.24 16 8 C 0.10 1.23 3.04 -26.68 -0.08 1.15 16 9 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 10 C 0.07 0.93 5.39 -3.82 -0.02 0.91 16 11 N -0.67 -11.69 6.13 -115.06 -0.70 -12.40 16 12 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 13 C 0.44 10.86 7.82 -10.99 -0.09 10.78 16 14 O -0.58 -16.40 15.78 5.55 0.09 -16.31 16 15 N -0.57 -14.75 5.29 -10.96 -0.06 -14.80 16 16 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 17 H 0.10 3.09 7.16 -52.48 -0.38 2.72 16 18 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 19 N -0.90 -25.00 13.05 55.50 0.72 -24.27 16 20 Si 0.93 21.42 29.55 -169.99 -5.02 16.40 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 O -0.38 -5.16 9.64 -35.23 -0.34 -5.50 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.36 6.81 8.00 -39.29 -0.31 6.50 16 38 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 41 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -32.25 337.46 -8.00 -40.25 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.91 Total: 11.45 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 0.35 Total: 6.72 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -1.25 Total: -58.09 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.25 Total: -21.81 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.25 -8.00 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697277670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.616 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds