Wall clock time and date at job start Mon Mar 30 2020 05:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.51195 * 2 1 4 4 C 1.53096 * 109.50456 * 120.09472 * 2 1 3 5 5 N 1.47019 * 109.25360 * 176.82553 * 4 2 1 6 6 C 1.46904 * 110.99608 * 177.60443 * 5 4 2 7 7 C 1.47015 * 110.75398 * 301.37668 * 5 4 2 8 8 C 1.53100 * 109.25373 * 58.61801 * 7 5 4 9 9 H 1.09002 * 109.50506 * 63.08806 * 8 7 5 10 10 C 1.53004 * 109.50446 * 183.17318 * 8 7 5 11 11 N 1.46899 * 109.47081 * 184.91653 * 10 8 7 12 12 C 1.46897 * 111.00067 * 180.02562 * 11 10 8 13 13 C 1.50704 * 109.47263 * 179.97438 * 12 11 10 14 14 O 1.21287 * 119.99866 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99832 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00030 * 180.02562 * 15 13 12 17 17 H 1.08007 * 119.99692 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00842 * 180.02562 * 16 15 13 19 19 N 1.31416 * 119.99049 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00661 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47054 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47306 * 120.00018 * 20 18 16 23 23 H 1.48504 * 109.47047 * 240.00248 * 20 18 16 24 24 O 1.43018 * 109.53512 * 239.89372 * 2 1 3 25 25 H 1.09004 * 109.46403 * 299.91159 * 1 2 3 26 26 H 1.09003 * 109.47080 * 59.90351 * 1 2 3 27 27 H 1.08991 * 109.47106 * 179.91204 * 1 2 3 28 28 H 1.08991 * 109.51146 * 56.88782 * 4 2 1 29 29 H 1.08997 * 109.50458 * 296.75514 * 4 2 1 30 30 H 1.09005 * 109.46894 * 183.62969 * 6 5 4 31 31 H 1.08995 * 109.47106 * 303.63232 * 6 5 4 32 32 H 1.08998 * 109.46989 * 63.63507 * 6 5 4 33 33 H 1.09005 * 109.50675 * 298.68839 * 7 5 4 34 34 H 1.08990 * 109.50900 * 178.55298 * 7 5 4 35 35 H 1.08994 * 109.46926 * 304.91279 * 10 8 7 36 36 H 1.09003 * 109.46908 * 64.91877 * 10 8 7 37 37 H 1.00906 * 110.99689 * 303.95130 * 11 10 8 38 38 H 1.09001 * 109.47092 * 299.99552 * 12 11 10 39 39 H 1.08997 * 109.47551 * 59.99357 * 12 11 10 40 40 H 0.97001 * 120.00602 * 0.02562 * 15 13 12 41 41 H 0.97009 * 119.99617 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0412 -0.7236 1.2486 5 7 3.5094 -0.7872 1.2051 6 6 4.0447 -1.4253 2.4152 7 6 3.9649 -1.4871 -0.0049 8 6 3.4343 -0.7559 -1.2410 9 1 3.8537 0.2496 -1.2770 10 6 3.8384 -1.5235 -2.5013 11 7 3.4319 -0.7619 -3.6899 12 6 3.8040 -1.4704 -4.9217 13 6 3.3714 -0.6610 -6.1171 14 8 2.8080 0.4013 -5.9583 15 7 3.6105 -1.1176 -7.3623 16 6 3.2174 -0.3810 -8.4497 17 1 2.7164 0.5653 -8.3084 18 6 3.4634 -0.8518 -9.7337 19 7 4.0734 -2.0031 -9.9056 20 14 2.9271 0.1514 -11.2152 21 1 2.2661 1.3991 -10.7552 22 1 4.1153 0.4942 -12.0373 23 1 1.9729 -0.6418 -12.0311 24 8 2.0083 -0.6761 -1.1660 25 1 -0.3632 0.5125 0.8908 26 1 -0.3633 0.5153 -0.8891 27 1 -0.3633 -1.0276 -0.0016 28 1 1.6337 -1.7341 1.2761 29 1 1.7267 -0.1793 2.1390 30 1 5.1341 -1.4016 2.3868 31 1 3.6923 -0.8878 3.2955 32 1 3.7049 -2.4600 2.4610 33 1 3.5881 -2.5099 0.0025 34 1 5.0544 -1.5001 -0.0295 35 1 4.9194 -1.6624 -2.5111 36 1 3.3469 -2.4963 -2.5074 37 1 2.4426 -0.5642 -3.6717 38 1 4.8848 -1.6094 -4.9486 39 1 3.3121 -2.4428 -4.9445 40 1 4.0607 -1.9673 -7.4893 41 1 4.2448 -2.3321 -10.8019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697277670.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:43 Heat of formation + Delta-G solvation = -103.313908 kcal Electronic energy + Delta-G solvation = -20918.577031 eV Core-core repulsion = 17639.230023 eV Total energy + Delta-G solvation = -3279.347007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 271.168 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85129 -40.10620 -37.13694 -36.49755 -35.85692 -33.81577 -33.23759 -30.95963 -28.79286 -27.97327 -26.78906 -25.07768 -23.37089 -22.70627 -21.44368 -21.04032 -19.90850 -17.92265 -17.74429 -17.08261 -16.94895 -16.53898 -16.35346 -16.10878 -15.80204 -15.60944 -15.03359 -14.75149 -14.64791 -14.32005 -13.65566 -13.54617 -13.37059 -13.32601 -13.11175 -13.08933 -12.84199 -12.74164 -12.70352 -12.40963 -12.11920 -12.04857 -12.04520 -11.51943 -11.48028 -10.56015 -10.35082 -10.01768 -9.43593 -9.34318 -8.46939 -5.95674 1.36794 1.41866 1.56527 2.04696 2.29214 2.64853 2.72829 3.01414 3.20204 3.50102 3.82070 3.91083 3.96976 4.08795 4.17083 4.31060 4.33193 4.41369 4.46291 4.51678 4.54995 4.58458 4.61700 4.65578 4.69934 4.72934 4.93609 4.98791 4.99333 5.11421 5.25345 5.41050 5.84725 5.90271 5.96454 6.09434 6.28323 6.35921 6.60181 7.12529 7.55708 8.11506 8.70842 Molecular weight = 271.17amu Principal moments of inertia in cm(-1) A = 0.040089 B = 0.003046 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.280656 B = 9189.355597 C = 9685.701049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.057 0.943 4 C 0.029 3.971 5 N -0.557 5.557 6 C 0.026 3.974 7 C 0.032 3.968 8 C 0.099 3.901 9 H 0.059 0.941 10 C 0.072 3.928 11 N -0.681 5.681 12 C 0.064 3.936 13 C 0.437 3.563 14 O -0.624 6.624 15 N -0.573 5.573 16 C -0.334 4.334 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.994 3.006 21 H -0.274 1.274 22 H -0.270 1.270 23 H -0.270 1.270 24 O -0.400 6.400 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.029 0.971 33 H 0.043 0.957 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.041 0.959 37 H 0.345 0.655 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 -3.364 23.450 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.075 0.925 4 C -0.099 4.099 5 N -0.282 5.282 6 C -0.122 4.122 7 C -0.097 4.097 8 C 0.040 3.960 9 H 0.078 0.922 10 C -0.057 4.057 11 N -0.313 5.313 12 C -0.068 4.068 13 C 0.225 3.775 14 O -0.510 6.510 15 N -0.210 5.210 16 C -0.463 4.463 17 H 0.095 0.905 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.817 3.183 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.195 1.195 24 O -0.320 6.320 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.059 0.941 37 H 0.164 0.836 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.231 0.769 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.276 -1.975 23.242 23.327 hybrid contribution -0.769 -1.410 -0.821 1.803 sum -1.045 -3.385 22.421 22.699 Atomic orbital electron populations 1.21745 0.91636 1.02995 1.03384 1.22294 0.95809 0.95289 0.84137 0.92505 1.22820 0.87571 1.00099 0.99415 1.62194 1.09399 1.53434 1.03145 1.22435 1.01211 0.96993 0.91558 1.22690 1.01907 0.95595 0.89467 1.22134 0.80996 0.99167 0.93669 0.92248 1.22027 1.01827 0.94417 0.87425 1.60095 1.24163 1.46717 1.00375 1.21558 1.02749 0.94657 0.87824 1.20881 0.83780 0.87839 0.85026 1.90492 1.48131 1.26073 1.86352 1.41924 1.52909 1.21674 1.04502 1.19705 1.37077 1.04282 0.85274 0.90458 1.26054 0.96618 0.97535 1.01091 1.69684 1.41897 1.20021 1.24544 0.84858 0.78271 0.77943 0.77178 1.19873 1.19470 1.19501 1.87968 1.21447 1.78517 1.44069 0.88576 0.92552 0.92025 0.94190 0.87944 0.90333 0.90098 0.95247 0.93868 0.88008 0.87662 0.94069 0.83635 0.87230 0.91715 0.76896 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.57 71.98 0.69 -1.79 16 2 C 0.08 1.78 3.43 30.63 0.10 1.88 16 3 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.03 0.50 4.95 86.31 0.43 0.93 16 5 N -0.56 -10.10 4.99 -921.43 -4.59 -14.69 16 6 C 0.03 0.32 9.60 127.69 1.23 1.55 16 7 C 0.03 0.61 4.95 86.31 0.43 1.04 16 8 C 0.10 2.43 3.04 30.63 0.09 2.53 16 9 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 10 C 0.07 1.83 5.39 86.30 0.47 2.30 16 11 N -0.68 -23.68 6.13 -517.94 -3.17 -26.85 16 12 C 0.06 2.33 6.17 85.56 0.53 2.86 16 13 C 0.44 21.76 7.82 87.66 0.69 22.45 16 14 O -0.62 -36.35 15.78 -3.05 -0.05 -36.40 16 15 N -0.57 -30.29 5.29 -306.99 -1.62 -31.91 16 16 C -0.33 -19.46 9.68 84.04 0.81 -18.65 16 17 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 18 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 19 N -0.92 -50.35 13.05 21.66 0.28 -50.06 16 20 Si 0.99 43.69 29.55 68.60 2.03 45.71 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 O -0.40 -10.99 9.64 -148.98 -1.44 -12.42 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.04 0.81 8.14 -2.38 -0.02 0.80 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.35 13.40 8.00 -89.69 -0.72 12.68 16 38 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 41 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 Total: -1.00 -70.12 337.46 -3.07 -73.19 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: -0.43 Total: 38.61 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 5.93 Total: 14.82 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -9.11 Total: -123.52 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -1.48 Total: -48.82 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -70.12 -3.07 -73.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697277670.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.120 kcal (2) G-P(sol) polarization free energy of solvation -70.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds