Wall clock time and date at job start Mon Mar 30 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99705 * 2 1 4 4 C 1.52996 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.81454 * 51.65967 * 4 3 2 6 6 C 1.54896 * 110.75116 * 288.32637 * 4 3 2 7 7 C 1.54266 * 104.19125 * 203.73968 * 6 4 3 8 8 H 1.09005 * 110.06880 * 142.91728 * 7 6 4 9 9 O 1.42898 * 110.03648 * 264.32431 * 7 6 4 10 10 C 1.53870 * 106.60088 * 23.61211 * 7 6 4 11 11 H 1.09000 * 110.03785 * 240.71033 * 10 7 6 12 12 N 1.46902 * 110.07425 * 119.30503 * 10 7 6 13 13 C 1.46905 * 111.00017 * 283.99095 * 12 10 7 14 14 C 1.50697 * 109.47251 * 163.83700 * 13 12 10 15 15 H 1.07998 * 119.99889 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00124 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99677 * 0.02562 * 16 14 13 18 18 Si 1.86789 * 120.00112 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47156 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47370 * 120.00206 * 18 16 14 21 21 H 1.48502 * 109.47403 * 240.00123 * 18 16 14 22 22 C 1.46901 * 111.00355 * 160.04011 * 12 10 7 23 23 C 1.52996 * 109.46900 * 289.20147 * 22 12 10 24 24 C 1.53007 * 109.46987 * 49.19509 * 22 12 10 25 25 C 1.54265 * 106.59949 * 359.97438 * 10 7 6 26 26 H 1.09004 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47152 * 300.00093 * 1 2 3 28 28 H 1.08998 * 109.47280 * 60.00545 * 1 2 3 29 29 H 1.08994 * 109.47554 * 59.99549 * 3 2 1 30 30 H 1.09000 * 109.46719 * 299.99683 * 3 2 1 31 31 H 1.08992 * 110.48696 * 322.42122 * 6 4 3 32 32 H 1.09000 * 110.48355 * 85.06762 * 6 4 3 33 33 H 0.96700 * 114.00322 * 297.17619 * 9 7 6 34 34 H 1.08999 * 109.47292 * 283.84278 * 13 12 10 35 35 H 1.09004 * 109.46615 * 43.83796 * 13 12 10 36 36 H 0.97005 * 120.00189 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.47316 * 169.19481 * 22 12 10 38 38 H 1.08998 * 109.47377 * 57.08878 * 23 22 12 39 39 H 1.09007 * 109.47091 * 177.08772 * 23 22 12 40 40 H 1.08997 * 109.46878 * 297.08545 * 23 22 12 41 41 H 1.09001 * 109.46787 * 60.00738 * 24 22 12 42 42 H 1.09001 * 109.47106 * 179.97438 * 24 22 12 43 43 H 1.08993 * 109.47434 * 300.00766 * 24 22 12 44 44 H 1.09003 * 110.48993 * 217.71370 * 25 10 7 45 45 H 1.08997 * 110.60430 * 95.12268 * 25 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8713 0.5243 -0.8000 6 6 4.0471 0.6872 1.3741 7 6 5.5053 1.1866 1.4381 8 1 5.7505 1.4956 2.4543 9 8 6.3959 0.1531 1.0129 10 6 5.6002 2.3899 0.4839 11 1 6.3256 2.1856 -0.3037 12 7 5.9922 3.5941 1.2283 13 6 4.8614 4.1277 1.9995 14 6 5.3723 5.0935 3.0373 15 1 6.4310 5.2915 3.1159 16 6 4.4880 5.7244 3.8865 17 7 3.1988 5.4829 3.7911 18 14 5.1213 6.9210 5.1734 19 1 6.6000 7.0167 5.0752 20 1 4.5226 8.2601 4.9415 21 1 4.7448 6.4381 6.5263 22 6 6.5426 4.6148 0.3265 23 6 7.9144 4.1629 -0.1783 24 6 5.5994 4.8065 -0.8629 25 6 4.1966 2.5794 -0.1274 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6885 1.8465 0.8899 30 1 1.6885 1.8463 -0.8900 31 1 3.4586 1.1236 2.1809 32 1 4.0142 -0.4012 1.4221 33 1 6.3822 -0.6338 1.5747 34 1 4.1756 4.6447 1.3283 35 1 4.3386 3.3078 2.4921 36 1 2.5766 5.9270 4.3882 37 1 6.6456 5.5573 0.8642 38 1 7.8197 3.1953 -0.6710 39 1 8.3000 4.8955 -0.8874 40 1 8.6009 4.0762 0.6639 41 1 4.6221 5.1284 -0.5033 42 1 6.0076 5.5641 -1.5319 43 1 5.4963 3.8640 -1.4005 44 1 4.2728 2.8721 -1.1746 45 1 3.6304 3.3218 0.4350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698786785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:28 Heat of formation + Delta-G solvation = -93.351737 kcal Electronic energy + Delta-G solvation = -22917.296892 eV Core-core repulsion = 19741.922221 eV Total energy + Delta-G solvation = -3175.374672 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71542 -37.67617 -36.42778 -34.29584 -32.82346 -30.88170 -28.85895 -27.94515 -26.99223 -26.28195 -25.44773 -23.65116 -22.30996 -20.39498 -19.78779 -18.19685 -16.91694 -16.36931 -16.26196 -15.77609 -15.57822 -15.02570 -14.42116 -14.15484 -13.91549 -13.72849 -13.53194 -12.93628 -12.82705 -12.30726 -12.06138 -11.85365 -11.76993 -11.62749 -11.47927 -11.29354 -11.17382 -10.92510 -10.69475 -10.57721 -10.43347 -10.36944 -10.20788 -10.06318 -9.83957 -9.61288 -9.54317 -9.29791 -9.10723 -8.43202 -7.16723 -6.03322 -4.03366 3.30000 3.38021 3.43135 3.86692 4.39902 4.52803 4.83844 4.95724 5.20155 5.28372 5.32132 5.34543 5.40882 5.53723 5.58868 5.63634 5.72840 5.78188 5.82453 5.87414 5.97123 6.05025 6.05125 6.09445 6.19633 6.20768 6.29538 6.33695 6.38524 6.46781 6.57830 6.63316 6.77765 6.82678 6.91615 7.27129 7.32640 7.40503 7.84316 8.07936 8.14494 8.25922 8.58421 9.05296 9.60796 11.06975 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.006586 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.479020 B = 4250.164678 C = 5247.651129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.068 3.932 4 C -0.084 4.084 5 H 0.079 0.921 6 C -0.143 4.143 7 C 0.107 3.893 8 H 0.073 0.927 9 O -0.569 6.569 10 C 0.092 3.908 11 H 0.083 0.917 12 N -0.522 5.522 13 C 0.189 3.811 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.285 1.285 22 C 0.081 3.919 23 C -0.139 4.139 24 C -0.188 4.188 25 C -0.160 4.160 26 H 0.081 0.919 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.370 0.630 34 H 0.001 0.999 35 H 0.030 0.970 36 H 0.259 0.741 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 -8.164 -8.212 11.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.008 4.008 4 C -0.103 4.103 5 H 0.097 0.903 6 C -0.181 4.181 7 C 0.048 3.952 8 H 0.091 0.909 9 O -0.374 6.374 10 C -0.017 4.017 11 H 0.101 0.899 12 N -0.245 5.245 13 C 0.065 3.935 14 C -0.542 4.542 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.027 4.027 23 C -0.197 4.197 24 C -0.247 4.247 25 C -0.198 4.198 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.216 0.784 34 H 0.018 0.982 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.393 -7.956 -8.245 11.464 hybrid contribution -0.978 0.777 0.649 1.408 sum -1.371 -7.178 -7.597 10.541 Atomic orbital electron populations 1.22699 0.81634 1.02235 0.99945 1.87857 1.19195 1.28675 1.95432 1.22643 0.93856 0.84025 1.00318 1.22000 0.91994 0.97917 0.98346 0.90305 1.23071 0.97135 1.00533 0.97359 1.22485 0.87113 0.86978 0.98653 0.90877 1.86464 1.65024 1.28809 1.57100 1.22059 0.94349 0.90782 0.94516 0.89911 1.62380 1.34883 1.04240 1.23010 1.19803 0.87281 0.94744 0.91708 1.21241 0.93810 1.23452 1.15653 0.91915 1.24959 0.94820 0.97135 0.97663 1.69956 1.01495 1.43615 1.38858 0.86497 0.79097 0.80732 0.81432 1.19671 1.21224 1.21126 1.21567 0.92943 0.96549 0.91675 1.21843 0.97330 1.00170 1.00363 1.22813 1.01327 1.01168 0.99348 1.23560 0.98107 0.96702 1.01467 0.90031 0.94049 0.94409 0.92640 0.93672 0.90652 0.91497 0.78375 0.98177 0.95190 0.93118 0.89191 0.93290 0.93505 0.92403 0.92187 0.93571 0.92299 0.91331 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.80 10.65 -35.23 -0.38 -6.18 16 3 C 0.07 1.02 5.37 37.16 0.20 1.22 16 4 C -0.08 -1.31 3.16 -88.64 -0.28 -1.59 16 5 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 6 C -0.14 -2.31 5.84 -25.07 -0.15 -2.45 16 7 C 0.11 1.86 3.36 -25.62 -0.09 1.77 16 8 H 0.07 1.43 7.66 -51.93 -0.40 1.04 16 9 O -0.57 -9.02 13.21 -35.23 -0.47 -9.49 16 10 C 0.09 1.68 2.09 -66.60 -0.14 1.54 16 11 H 0.08 1.50 5.71 -51.93 -0.30 1.21 16 12 N -0.52 -10.82 4.19 -218.81 -0.92 -11.74 16 13 C 0.19 4.63 3.12 -4.97 -0.02 4.61 16 14 C -0.50 -13.67 8.40 -34.44 -0.29 -13.96 16 15 H 0.06 1.72 7.64 -52.49 -0.40 1.32 16 16 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 17 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.08 1.54 2.78 -67.71 -0.19 1.35 16 23 C -0.14 -2.25 9.28 37.16 0.34 -1.91 16 24 C -0.19 -3.16 7.54 37.16 0.28 -2.88 16 25 C -0.16 -2.70 3.75 -25.09 -0.09 -2.79 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.89 7.99 -51.93 -0.41 0.48 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.33 7.84 -51.93 -0.41 0.92 16 32 H 0.07 0.98 8.06 -51.93 -0.42 0.57 16 33 H 0.37 4.23 9.11 45.56 0.41 4.65 16 34 H 0.00 0.02 5.12 -51.93 -0.27 -0.25 16 35 H 0.03 0.79 6.98 -51.93 -0.36 0.42 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.09 1.89 7.08 -51.93 -0.37 1.53 16 38 H 0.05 0.77 6.41 -51.93 -0.33 0.44 16 39 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.11 6.26 -51.93 -0.32 0.79 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.92 4.75 -51.93 -0.25 0.68 16 44 H 0.07 1.06 5.96 -51.93 -0.31 0.75 16 45 H 0.09 1.83 4.84 -51.93 -0.25 1.58 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -29.59 338.22 -7.24 -36.83 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.90 Total: 6.43 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 0.60 Total: -12.21 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.18 Total: -36.83 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.84 Total: -15.67 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.59 -7.24 -36.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698786785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.519 kcal (2) G-P(sol) polarization free energy of solvation -29.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds